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CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The most recent updates can be found on our curation site or by clicking the Most Recent Data option in the menu below.


         Recommended Genes


Most recent data | Six months | One year | All time

New or updated genes since one year ago. The cutoff date is March 5th, 2020

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
yesterdaypgd3 phosphogluconate dehydrogenase3: single copy cDNA, csu843, similar to alfalfa enzyme; pentose phosphate pathway
4.03
GRMZM2G440208
Ribeiro, C et al. 2020. Proc Natl Acad Sci, USA 117:33177-33185     Reference: December 30th, 2020
Gene Product: December 16th, 2020
Variation: March 4th, 2021
Gene Model: July 28th, 2016
yesterdaybf1 blue fluorescent1: homozygous Bf1 seedlings, and homozygous or heterozygous anthers, fluoresce blue under ultraviolet light; anthranilic acid accumulates, anthranilate synthase has altered inhibition kinetics
9.07 - 9.07
GRMZM2G051219
Li, PC et al. 2021. Theor Appl Genet pp.doi: 10.1007/s00122-021-03784-4     Reference: March 4th, 2021
Gene Product: October 23rd, 2013
Variation: October 22nd, 2013
Gene Model: October 21st, 2013
yesterdayct2 compact plant2: semi-dwarf plant, 1/3 height; shortened internodes; club tassel, fasciated ear
1.01 - 1.02
GRMZM2G064732
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749     Reference: March 4th, 2021
Gene Product: September 16th, 2013
Variation: September 20th, 2013
Gene Model: September 16th, 2013
yesterdaytd1 thick tassel dwarf1: shortened plants, fasciated ears, increased spikelet density in tassel
5.03
GRMZM2G300133
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749     Reference: March 4th, 2021
Gene Product: October 22nd, 2012
Variation: October 23rd, 2012
Gene Model: October 22nd, 2012
yesterdayumc1052  :
3.09
GRMZM2G071154
    Variation: September 1st, 2003
Gene Model: March 4th, 2021
yesterdayumc1351  :
3.04
GRMZM2G169182
    Variation: September 1st, 2003
Gene Model: March 4th, 2021
yesterdayumc1425  :
3.04
AC190933.3_FG004
    Variation: September 1st, 2003
Gene Model: March 4th, 2021
yesterdayfea2 fasciated ear2: ear fasciated, broadened and flattened at the tip; rows irregular; similar to CLAVATA 2 of Arabidopsis thaliana
4.05
   Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749     Reference: March 4th, 2021
Gene Product: July 10th, 2019
Variation: November 13th, 2020
yesterdayfea3 fasciated ear3: ear tip broad and branched, typically splitting and showing ring fasciation to form a hollow ear.
 
GRMZM2G166524
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749   At3g25670 (TAIR)
LOC_Os01g02060 (MSU/TIGR)
Reference: March 4th, 2021
Gene Product: July 10th, 2019
Variation: May 18th, 2016
Gene Model: May 18th, 2016
yesterdaystp1 sugar transport1: leaf cDNA csu142 similar to yeast plasma membrane sugar transport protein, single copy
8.03
   Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: March 4th, 2021
Variation: August 26th, 2015
yesterdayrul1 rum1-like1:
 
GRMZM2G163848
Li, PC et al. 2021. Theor Appl Genet pp.doi: 10.1007/s00122-021-03784-4     Reference: March 4th, 2021
Variation: November 18th, 2011
Gene Model: November 17th, 2011
yesterdayfcp1 fon2-like cle protein1: mutants have a fasciated ear phenotype
 
GRMZM2G165836
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749   LOC_Os04g39770 (MSU/TIGR)
Os04g0473800 (Gramene)
Reference: March 4th, 2021
Gene Product: May 21st, 2016
Variation: April 15th, 2019
Gene Model: May 21st, 2016
yesterdaycle7 clavata3/esr-related7: mutants have fasciated ears
 
GRMZM2G372364
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749     Reference: March 4th, 2021
Gene Product: February 22nd, 2021
Variation: March 6th, 2020
Gene Model: September 15th, 2016
yesterdaycle14 clavata3/esr-related14: candidate for clavata3 (CLV3) ortholog; peptides encoded by this gene shown to have a negative effect on SAM size when applied exogenously
 
AC191109.3_FG001
Zhu, CM et al. 2021. Frontiers Plant Sci 12:636749     Reference: March 4th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 15th, 2016
yesterdayaas8 auxin amido synthetase8: encodes an auxin-responsive indole-3-acetic acid-amido synthetase (GH3)
 
GRMZM2G053338
Feng, X et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab094     Reference: March 4th, 2021
Gene Product: October 21st, 2019
Gene Model: October 21st, 2019
yesterdayhak10 potassium high-affinity transporter10:
 
GRMZM2G443728
Li, PC et al. 2021. Theor Appl Genet pp.doi: 10.1007/s00122-021-03784-4     Reference: March 4th, 2021
Gene Product: March 12th, 2020
Gene Model: March 12th, 2020
yesterdaymads79 MADS-transcription factor 79:
 
GRMZM2G032070
Li, PC et al. 2021. Theor Appl Genet pp.doi: 10.1007/s00122-021-03784-4     Reference: March 4th, 2021
Gene Product: September 1st, 2003
Gene Model: March 4th, 2021
yesterdaystp2 sugar transport2:
 
AC208897.3_FG004
Li, PC et al. 2021. Theor Appl Genet pp.doi: 10.1007/s00122-021-03784-4     Reference: March 4th, 2021
Gene Product: March 4th, 2021
Gene Model: March 4th, 2021
yesterdayyuc5 Yucca5: transcribed in the root apex (0-5mm)
7.02
GRMZM2G132489
Feng, X et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab094     Reference: March 4th, 2021
Gene Product: June 18th, 2018
Gene Model: June 17th, 2016
2 days agoig1 indeterminate gametophyte1: low male fertility, polyembryony, heterofertilization, polyploidy, androgenesis (male and female affected)
3.06 - 3.07
   Yan, YY et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13086     Reference: March 3rd, 2021
Gene Product: October 2nd, 2007
Variation: October 19th, 2010
2 days agolg3 liguleless3: dominant Lg3 plants lack ligule; leaves upright, broad, often concave and pleated; homeobox similar to knox5 and knox11
3.04
   Yan, YY et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13086     Reference: March 3rd, 2021
Gene Product: August 22nd, 2014
Variation: March 16th, 2015
2 days agobhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G165042
Yan, YY et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13086     Reference: March 3rd, 2021
Variation: September 1st, 2003
Gene Model: July 6th, 2017
2 days agoms28 male sterile28: anaphase I disturbed, spindle persists
 
GRMZM2G123063
Li, YF et al. 2021. Chromosome Res pp. doi: 10.1007/s10577-021-09653-6     Reference: March 3rd, 2021
Gene Product: August 12th, 2016
Variation: March 3rd, 2021
Gene Model: August 13th, 2016
2 days agoIDP798  :
3.09
GRMZM2G036050
Zhang, XB et al. 2021. Genes & Genomics doi: 10.1007/s13258-021-01067-2   AT5G23880 (TAIR) Reference: March 3rd, 2021
Variation: March 31st, 2005
Gene Model: February 25th, 2019
3 days agorca1 RUBISCO activase1: single copy leaf cDNA csu901 smilar to RUBISCO activaseencodes the beta form of RUBISCO activase
4.00
GRMZM2G162282
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: October 28th, 2014
Variation: September 1st, 2003
Gene Model: February 11th, 2014
3 days agocat1 catalase1: electrophoretic mobility; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
5.03
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agopdk2 pyruvate, orthophosphate dikinase2: cytosolic
8.04
GRMZM2G097457
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: July 28th, 2014
Variation: December 19th, 2017
Gene Model: November 21st, 2012
3 days agopep1 phosphoenolpyruvate carboxylase1: cytosolic C4 isozyme; single copy, similar to C3-PEPCase genes; cDNA complements E. coli mutant; genomic and partial amino acid sequences compare; SSR phi065
9.03
   Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: May 27th, 2020
3 days agodhn1 dehydrin1: protein induced by abscisic acid; cDNA sequence agrees with amino acid sequence (aka dhn3, rab17, rny1)
6.05
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: November 20th, 2012
3 days agosu2 sugary2: endosperm glassy, translucent, sometimes wrinkled
6.04 - 6.05
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: October 14th, 2016
Variation: October 7th, 2010
3 days agomyb31 MYB31 transcription factor31: R2R3-MYB factor, regulates lignin genes
 
GRMZM5G892094
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8   LOC_Os09g36730 (MSU/TIGR) Reference: October 28th, 2020
Gene Product: February 16th, 2011
Variation: May 6th, 2011
Gene Model: March 2nd, 2021
3 days agosps1 sucrose phosphate synthase1: cDNA encodes a 1068 amino acid leaf protein; transgenic (E. coli) directs sucrose phosphate synthesis
8.06
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: January 15th, 2015
3 days agopdk1 pyruvate, orthophosphate dikinase1: cDNA, genomic and peptide sequences; microsatellite mapped (SSRs phi025, phi078, phi081; nc012 ); cytosolic or plastidic, dependent on transcript processingmutant seedlings are pale green and lethal once kernel reserves are exhaused, even when plants were grown under 2% CO2
6.05
GRMZM2G306345
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: July 28th, 2014
Variation: April 18th, 2018
Gene Model: November 21st, 2012
3 days agoumc1459  :
2.05
GRMZM2G092581
    Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agoumc1464  :
2.08
GRMZM2G365160
    Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agonnr2 nitrate reductase2: partial cDNA from seedling root cDNA similar to nitrate reductase
5.07
GRMZM5G878558
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: October 26th, 2010
Gene Model: May 10th, 2018
3 days agonnr1 nitrate reductase(NADH)1: leaf, scutellum cDNA's; flavin and cyt b domains functional in E. coli, may be allelic to nnr3
4.05
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: October 26th, 2010
3 days agoumc1525  :
2.09
GRMZM2G345622
    Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agoumc1551  :
2.09
GRMZM2G052507
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agoumc1579  :
2.04
GRMZM2G414620
    Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agomdh6 malate dehydrogenase6: mesophyll cells, C4 photosynthesis; a second copy may not function in photosynthesis
1.07
GRMZM2G129513
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: September 23rd, 2014
Variation: August 31st, 2010
Gene Model: October 24th, 2013
3 days agoumc1749  :
2.06
GRMZM2G336456
    Variation: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agome3 NADP malic enzyme3: chloroplast C4-photosynthesis, delivers CO2 to ribulose bisphosphate carboylase
3.02
   Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: June 27th, 2019
Variation: September 1st, 2003
3 days agopep4 phosphoenolpyruvate carboxylase4: cDNA for anaplerotic C3 isozyme; gene specific cDNA probe;
7.02
   Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: December 27th, 2010
3 days agoelfa9 elongation factor 1-alpha9: shares 89-99% nucleotide sequence identity with genes elf1a to alf1g (aka clones eEF1Aa to eEF1Ag).
9.03
GRMZM2G153541
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: April 14th, 2014
Gene Model: April 15th, 2014
3 days agogln2 glutamine synthetase2: cytosolic, GS1-2 isoform, root specific, gene specific cDNA probe, 6-member nuclear gene family; contary to preceding notes, Rastogi et. al., 1998 Plant Cell Phyol. 39:443-446, observed gln2 trancripts primarily in the pedicels but at undetectable levels in roots (TM).
1.09
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agome2 NADP-dependent malic enzyme2: cDNA in roots, preprotein contains chloroplast transit peptide sequences and is imported and processed; C3-like enzyme
6.05
GRMZM2G122479
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: June 27th, 2019
Variation: August 24th, 2014
Gene Model: August 21st, 2014
3 days agorca4 RUBISCO activase4: expression affected in response to nicosulfuron
2.02 - 2.02
GRMZM2G039345
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: October 28th, 2014
Gene Model: March 2nd, 2021
3 days agogln4 glutamine synthetase4: cytosolic GS1-3 isoform, major species in both root and leaf, gene specific cDNA probes, 6-member nuclear gene family; SSR phi085
5.06
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agogln5 glutamine synthetase5: cytosolic GS1-4 isoform, major species in both leaf and root, gene specific cDNA probe, 6-member nuclear gene family
4.06
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: May 30th, 2014
3 days agogln1 glutamine synthetase1: chloroplast, gene specific cDNA probe, GS2 isoform; 6-member nuclear gene family
10.07
   Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agonrt2 nitrate transport2:
4.11
GRMZM2G010280
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: May 9th, 2018
Gene Model: May 9th, 2018
3 days agonii2 nitrite reductase2: cDNA homologous to spinach gene, induced by nitrate, putative chloroplast transit peptide, two copies
4.07
GRMZM2G079381
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: September 10th, 2014
3 days agonrt3 nitrate transport3:
 
GRMZM2G163866
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Gene Model: September 10th, 2014
3 days agonrt6 nitrate transport6:
 
GRMZM2G141491
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Gene Model: September 18th, 2020
3 days agomdh7 malate dehydrogenase7: expression affected in response to nicosulfuron
 
GRMZM2G068455
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agopcs1 pyrroline-5-carboxylate synthase1: involved in drought stress tolerance.
 
AC203754.4_FG008
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: March 19th, 2015
Gene Model: March 2nd, 2021
3 days agonrt7 nitrate transport7: related to nitrogen assimilation.
 
GRMZM5G811593
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 1st, 2003
Gene Model: March 2nd, 2021
3 days agorca2 RUBISCO activase2: encodes the beta form of RUBISCO activase
4.00
GRMZM2G162200
Wang, J et al. 2021. Ecotoxicol Environ Safety 214:112096     Reference: March 2nd, 2021
Gene Product: October 28th, 2014
Variation: February 11th, 2014
Gene Model: February 11th, 2014
3 days agoao1 aldehyde oxidase1: functionally cloned (Sekimoto et al 1997)
1.11
GRMZM2G141535
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: May 2nd, 2012
Variation: May 30th, 2012
Gene Model: October 4th, 2014
3 days agovp14 viviparous14: viviparous; yellow endosperm; abscisic acid biosynthesis; SSR umc1218
1.08
GRMZM2G014392
Mostafa, HHA et al. 2021. Plant Growth Regulation pp.doi: 10.1007/s10725-021-00698-5     Reference: March 2nd, 2021
Gene Product: September 20th, 2012
Variation: June 25th, 2007
Gene Model: May 13th, 2011
4 days agocpps2 copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005)
1.04
GRMZM2G044481
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: August 16th, 2012
Variation: January 22nd, 2018
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
4 days agomyb40 myb transcription factor40: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
GRMZM2G051256
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Variation: February 18th, 2011
Gene Model: July 28th, 2016
4 days agodu1 dull endosperm1: glassy, tarnished endosperm; encodes a starch synthase III, that with an isoamylase-type debranching enzyme represses accumulation of phytoglycogen
10.03
GRMZM2G141399
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: October 14th, 2016
Variation: June 29th, 2015
Gene Model: February 28th, 2012
4 days agorp1 resistance to Puccinia sorghi1: dominant Rp1 resistant
10.01
GRMZM2G069382
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: May 14th, 2019
Variation: April 1st, 2015
Gene Model: January 8th, 2018
4 days agozpu1 pullulanase-type starch debranching enzyme1: single copy, cDNA clone similar to rice sequence; SSR umc1003The zpu1 gene encodes a pullulanase-type starch debranching enzyme. Analysis of plants homozygous for the zpu1-204 mutation reveal the genes role in starch catabolism. zpu1-204 endosperm accumulate maltooligosaccharides not found in wild type plants. zpu1-204 are also deficient for linear maltooligosaccharides.
2.05
GRMZM2G158043
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: October 25th, 2011
Variation: June 29th, 2015
Gene Model: November 20th, 2014
4 days agogbss1 granule-bound starch synthase1:
 
GRMZM2G008263
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: June 4th, 2008
Variation: August 4th, 2011
Gene Model: November 20th, 2014
4 days agomyb100 MYB-transcription factor 100: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
GRMZM2G143046
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Variation: December 6th, 2016
Gene Model: December 6th, 2016
4 days agosbe1 starch branching enzyme1: maize kernel cDNA sequence is similar to starch branching enzyme I of bacteria, encodes a putative 64-amino acid plastid transit peptide (aka sbe1)
5.03
   Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: September 1st, 2003
Variation: January 5th, 2018
4 days agosbe3 starch branching enzyme3:
8.06
GRMZM2G005298
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: June 6th, 2011
Variation: June 1st, 2011
Gene Model: September 23rd, 2018
4 days agosu4 sugary4: duplicate factor: in combination with su3 gives sugary endosperm phenotype.
6.05
GRMZM2G090905
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: October 25th, 2011
Variation: June 3rd, 2011
Gene Model: October 24th, 2011
4 days agoks1 kaurene synthase1:
 
GRMZM2G016922
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: August 16th, 2012
Gene Model: October 27th, 2014
4 days agoks4 kaurene synthase4:
 
AC214360.3_FG001
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: August 16th, 2012
Gene Model: October 27th, 2014
4 days agoko2 kaurene oxidase2:
 
GRMZM2G161472
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
4 days agonkd1 naked endosperm1: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
 
GRMZM2G129261
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: January 3rd, 2015
Variation: January 3rd, 2015
Gene Model: January 2nd, 2015
4 days agodbb12 double B-box zinc finger protein12:
 
GRMZM2G098442
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
4 days agoss7 starch synthase7:
 
   Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: October 14th, 2016
4 days agolac23 laccase23:
 
GRMZM2G094375
Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
4 days agogbss2 granule-bound starch synthase2:
 
   Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: June 4th, 2008
4 days agosbei1 starch branching enzyme IIb interacting protein1: knocking out this and sbei2 genes using the CRISPR/Cas9 system could effectively increase the apparent amylose content but maintain the maize kernel weight.
 
GRMZM2G089553
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: June 1st, 2020
Gene Model: June 1st, 2020
4 days agosbei2 starch branching enzyme IIb interacting protein2: knocking out this and sbei1 genes using the CRISPR/Cas9 system could effectively increase the apparent amylose content but maintain the maize kernel weight.
 
GRMZM2G091494
Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: June 1st, 2020
Gene Model: June 1st, 2020
4 days agohct14 hydroxycinnamoyltransferase14: expressed in response to Puccinia sorghi infection
 
   Kim, SB et al. 2021. Mol Plant Pathol pp.doi: 10.1111/mpp.13040     Reference: March 1st, 2021
Gene Product: November 7th, 2015
4 days agoss1 starch synthase I: single copy endosperm specific cDNA; encoded-protein cross-reacts with antibody to granule associated starch synthase I
9.02
   Zhong, YY et al. 2021. J Agric Food Chem pp.doi: 10.1021/acs.jafc.0c07354     Reference: March 1st, 2021
Gene Product: October 14th, 2016
Variation: October 7th, 2010
5 days agoumc1410  :
2.05 - 2.05
GRMZM2G412441
    Variation: September 1st, 2003
Gene Model: February 28th, 2021
6 days agoumc1007  :
2.05 - 2.05
GRMZM2G161087
    Variation: September 1st, 2003
Gene Model: February 27th, 2021
6 days agoumc1156  :
2.06
GRMZM2G063643
    Variation: September 1st, 2003
Gene Model: February 27th, 2021
6 days agorad17 RAD17 DNA repair protein homolog: mutants exhibited normal vegetative growth but male was partially sterile; pollen mother cells, non-homologous chromosome entanglement and chromosome fragmentation were frequently observed
9.06
GRMZM2G051138
Zhang, T et al. 2021. Frontiers Plant Sci 12:626528   LOC_Os03g13850 (MSU/TIGR) Reference: February 27th, 2021
Gene Product: February 27th, 2021
Variation: February 27th, 2021
Gene Model: June 26th, 2020
7 days agoamyb5 beta amylase5: enzyme and cDNA isolated; aleurone layer of germinating seed
7.03
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: February 26th, 2021
Variation: July 14th, 2012
Recommended by Ed Coe:
January 8th, 2008
7 days agofus6 fusca homolog: leaf cDNA csu896, single copy, similar to Arabidopsis fusca protein
1.01
GRMZM2G062210
Zhang, XG et al. 2021. BMC Plant Biology 21:118     Reference: February 26th, 2021
Variation: September 1st, 2003
Gene Model: July 27th, 2016
7 days agohk2 histidine kinase2: cytokinin responsive histidine protein kinase
3.05
   Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: May 20th, 2016
Variation: October 18th, 2020
7 days agopebp2 phosphatidylethanolamine-binding protein2:
 
   Zhang, XG et al. 2021. BMC Plant Biology 21:118     Reference: February 26th, 2021
Variation: December 15th, 2010
7 days agoamyb2 beta amylase2: electrophoretic mobility; monomeric
5.03 - 5.04
GRMZM2G450125
San Segundo, B et al. 1990. Plant Sci 69:167-177     Reference: September 1st, 2003
Gene Product: February 26th, 2021
Variation: September 23rd, 2013
Gene Model: July 27th, 2016
7 days agotpi3 triose phosphate isomerase3: electrophoretic mobility; cytosolic; dimeric; intra/interlocus hybrids occur with Tpi4 & Tpi5
8.02
GRMZM2G018177
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: September 1st, 2003
Variation: January 15th, 2015
Gene Model: January 15th, 2015
7 days agofnr2 ferredoxin NADP reductase2:
7.01
GRMZM2G011858
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Variation: October 9th, 2009
Gene Model: September 4th, 2018
7 days agohsftf10 HSF-transcription factor 10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: May 15th, 2020
7 days agofdx3 ferredoxin3: ubiquitous, cDNA clone, gene specific probe, amino acid sequence; SSR umc1064, pFD3
1.11
GRMZM2G053458
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: September 1st, 2003
Variation: January 29th, 2015
Gene Model: July 25th, 2017
7 days agofnr1 ferredoxin NADP reductase1: single or low copy; root, nitrate induced cDNA; deduced amino acid sequence >90% similar to rice FNR; produces an active FNR product in E. coli
1.11
   Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: September 1st, 2003
Variation: December 7th, 2012
7 days agopco067132  :
3.06
   Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Variation: September 25th, 2007
7 days agotrps4 trehalose-6-phosphate synthase4:
 
GRMZM2G008226
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
7 days agoamyb3 beta-amylase3: exhibited an inconsistent response to N treatment at silking
 
GRMZM2G347708
Ning, P et al. 2018. Agronomy 8:302     Reference: December 15th, 2018
Gene Product: February 26th, 2021
Gene Model: December 15th, 2018
7 days agoupl14 ubiquitin-protein ligase14:
 
GRMZM2G126795
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6   AT2G32950 (TAIR) Reference: February 26th, 2021
Gene Product: March 26th, 2020
Gene Model: March 26th, 2020
7 days agonrat2 nramp aluminum transporter2: 81.8% sequence identity with OsNrat1, an Al3+ transporter involved in rice Al tolerance (Matonyei et al., 2020)
 
GRMZM2G168747
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: August 17th, 2015
Gene Model: May 1st, 2020
7 days agonye2 non-yellowing2:
 
GRMZM2G379563
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: August 26th, 2020
Gene Model: August 26th, 2020
7 days agogpa3 glyceraldehyde-3-phosphate dehydrogenase3: involved in the carbon fixation pathway in mesophyll cells and bundle sheath cells
 
GRMZM5G821433
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: September 1st, 2003
Gene Model: February 26th, 2021
7 days agogpa4 glyceraldehyde-3-phosphate dehydrogenase4:
 
GRMZM2G162845
    Gene Product: September 1st, 2003
Gene Model: February 26th, 2021
7 days agomsb1 membrane steroid-binding protein1: involved in the carbon fixation pathway in mesophyll cells and bundle sheath cells
 
GRMZM2G119782
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: February 26th, 2021
Gene Model: February 26th, 2021
7 days agoppr448 pentatricopeptide repeat-containing protein448:
 
GRMZM2G303587
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: December 27th, 2016
Gene Model: February 26th, 2021
7 days agoamyb1 beta-amylase1: plays a key role in regulating the starch degradation rate and can catalyze the production of maltose from linear glucans
 
GRMZM2G082034
Qu, JZ et al. 2021. Mol Genet Genomics pp.doi: 10.1007/s00438-021-01761-6     Reference: February 26th, 2021
Gene Product: February 26th, 2021
Gene Model: February 26th, 2021
7 days agoamyb4 beta amylase4: sequence similar to rice BAD81275.1| putative beta-amylase PCT-BMYI per D. Lisch
3.00
GRMZM2G175218
Slotkin, RK; Freeling, M; Lisch, D. 2005. Nature Genetics. 37:641-644     Reference: September 26th, 2005
Gene Product: February 26th, 2021
Variation: February 27th, 2015
Gene Model: February 28th, 2015
8 days agomop1 mediator of paramutation1: recessive changes B' phenotype to dark, similar to B1-I
2.04
GRMZM2G042443
Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: August 8th, 2006
Variation: August 8th, 2006
Gene Model: April 24th, 2013
Recommended by Ed Coe:
January 8th, 2008
8 days agosig1B sigma factor 1B: sig5 locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.05
GRMZM2G543629
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: December 24th, 2019
Gene Model: May 8th, 2015
Recommended by Marty Sachs:
March 7th, 2007
8 days agopebp12 phosphatidylethanolamine-binding protein12:
 
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: December 10th, 2010
8 days agopebp15 phosphatidylethanolamine-binding protein15:
 
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: December 15th, 2010
8 days agogi1 gigantea1: homologous to Arabidopsis photoperiod gene gigantea
8.03
GRMZM2G107101
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: September 19th, 2012
Variation: April 23rd, 2013
Gene Model: September 18th, 2012
8 days agompk1 MAP kinase1: cDNA sequence; single copy
9.06
GRMZM2G053987
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: July 12th, 2013
Variation: January 16th, 2013
Gene Model: July 9th, 2013
8 days agohb17 Homeobox-transcription factor 17: similar to Arbidopsis homeobox-leucine zipper protein MERISTEM L1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.03
GRMZM2G118063
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: September 1st, 2003
Gene Model: October 21st, 2018
8 days agosbp2 SBP-domain protein2: cDNA sequence; SSR's umc1573, umc1574, umc1623
4.09
GRMZM2G168229
Kong, DX et al. 2021. New Phytol pp.doi: 10.1111/nph.17293     Reference: February 25th, 2021
Gene Product: July 5th, 2019
Variation: October 8th, 2011
Gene Model: December 18th, 2014
8 days agosbp3 SBP-domain protein3: cDNA sequence with SSR's umc1572, umc1595
6.02
GRMZM2G101499
Kong, DX et al. 2021. New Phytol pp.doi: 10.1111/nph.17293     Reference: February 25th, 2021
Gene Product: July 5th, 2019
Variation: September 1st, 2003
Gene Model: December 18th, 2014
8 days agosbp1 SBP-domain protein1: cDNA sequence, SSR's umc1575, umc1624
5.04
GRMZM2G111136
Kong, DX et al. 2021. New Phytol pp.doi: 10.1111/nph.17293     Reference: February 25th, 2021
Gene Product: July 5th, 2019
Variation: October 8th, 2011
Gene Model: December 18th, 2014
8 days agoereb202 AP2-EREBP-transcription factor 202: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Variation: January 22nd, 2021
8 days agohsftf3 HSF-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.similar to heat stress transcription factor A-6b of A. thaliana
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: May 15th, 2020
8 days agonactf25 NAC-transcription factor 25: Lines with a MITE insert in the promotor region are more sensitive to drought than those lacking this MITE insert.
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.   LOC_Os11g03300 (MSU/TIGR) Reference: February 25th, 2021
Gene Product: July 8th, 2019
Variation: September 22nd, 2015
8 days agonactf49 NAC-transcription factor 49: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Xiang, Y et al. 2020. J Exp Bot 72:eraa507     Reference: February 25th, 2021
Gene Product: July 8th, 2019
Variation: March 3rd, 2017
8 days agonactf60 NAC-transcription factor 60: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: July 8th, 2019
8 days agosbp18 SBP-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: July 5th, 2019
8 days agosbp7 SBP-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: July 5th, 2019
8 days agobhlh82 bHLH-transcription factor 82: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Xiang, Y et al. 2020. J Exp Bot 72:eraa507     Reference: February 25th, 2021
Gene Product: September 14th, 2016
Variation: August 30th, 2019
8 days agorld1 rolled leaf1: in dominant Rld1 plants, leaves are tightly rolled and tend to be entangled; ligular flaps on abaxial surface of leaf; resembles Ce1
9.07 - 9.08
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: October 6th, 2015
Variation: June 30th, 2012
8 days agonactf53 NAC-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.01
GRMZM2G059428
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: May 6th, 2016
Gene Model: May 6th, 2016
8 days agozmm15 Zea mays MADS-box 15:
5.01
GRMZM2G553379
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: June 15th, 2018
Gene Model: June 15th, 2018
8 days agoocl3 outer cell layer3:
7.03
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: September 1st, 2003
Variation: February 23rd, 2013
8 days agozap1 zea apetala homolog1:
2.10
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: February 2nd, 2011
8 days agocsu70  : partially sequenced leaf cDNA; single map site
6.01
GRMZM2G080546
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: September 1st, 2003
Gene Model: December 14th, 2019
8 days agomads1 MADS1: transcripts detected in egg cells and invivo zygotes of maize, also expressed in synergids and antipodal cells. during flower development expressed in all ear spikelet organ primordia at intermediate stages
9.07
   Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: September 1st, 2003
Variation: April 15th, 2008
8 days agofdl1 fused leaves1: coleoptile-first or first-second leaves fused at epidermis, curly
7.04
GRMZM2G056407
Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: September 1st, 2003
Variation: February 13th, 2020
Gene Model: September 12th, 2018
8 days agobhlh132 bHLH-transcription factor 132: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.05
GRMZM2G114873
Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: September 14th, 2016
Gene Model: September 12th, 2016
8 days agolox4 lipoxygenase4:
1.09
GRMZM2G109056
Lanubile, A et al. 2021. Genes 12:335     Reference: February 25th, 2021
Gene Product: January 3rd, 2018
Variation: February 25th, 2021
Gene Model: June 10th, 2014
8 days agoelm2 elongated mesocotyl2: mutant like elm1; encodes heme oxygenase
 
GRMZM2G101004
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: September 24th, 2014
Variation: September 24th, 2014
Gene Model: November 18th, 2013
8 days agothx32 Trihelix-transcription factor 32: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G320827
Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: July 29th, 2020
Gene Model: August 7th, 2019
8 days agotmm2 too many mouths-like2: stomatal development-related gene
 
GRMZM2G166413
Xiang, Y et al. 2020. J Exp Bot 72:eraa507     Reference: February 25th, 2021
Gene Product: July 10th, 2019
Gene Model: November 2nd, 2020
8 days agosbt4 subtilisin4: stomatal development-related gene
 
GRMZM2G429842
Xiang, Y et al. 2020. J Exp Bot 72:eraa507     Reference: February 25th, 2021
Gene Product: November 11th, 2016
Gene Model: November 2nd, 2020
8 days agoumc1353b  :
 
       Variation: February 25th, 2021
8 days agolarp1 la motif-related protein1: Required for competitive pollen tube growth
 
GRMZM2G020281
Zhou, L et al. 2021. Frontiers Plant Sci 12:635244     Reference: February 25th, 2021
Variation: February 25th, 2021
Gene Model: February 25th, 2021
8 days agoxlg3 extra-large guanine nucleotide-binding protein3: mutant knockout has reduced plant height; triple mutants are lethal at the seedling stage (Wu et al., 2018)
6.01
GRMZM2G429113
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Gene Product: May 1st, 2018
Variation: May 1st, 2018
Gene Model: May 1st, 2018
8 days agobzip60 bZIP transcription factor60: endoplasmic reticulum [ER] stress response
9.03
GRMZM2G025812
Cruz, DF, et al. 2020. 16:e9667     Reference: February 25th, 2021
Variation: August 26th, 2020
Gene Model: April 16th, 2013
8 days agodbf1 DRE-binding protein 1:
1.07
GRMZM2G061487
Vendramin, S; Huang, J; Crisp, PA; Madzima, TF; McGinnis, K. 2020. G3. 0:doi: 10.1016/j.cub.2018.05.072.     Reference: February 25th, 2021
Gene Product: April 10th, 2013
Variation: July 27th, 2005
Gene Model: July 27th, 2016
8 days agomn6 miniature seed6: encodes an endoplasmic reticulum signal peptidase; mutant kernels are relatively small
6.05
GRMZM2G035526
Yi, F, et al. 2020. Plant Physiol. 0:doi: 10.1093/plphys/kiaa060     Reference: February 25th, 2021
Gene Product: December 21st, 2020
Variation: December 21st, 2020
Gene Model: January 8th, 2020
9 days agorp7 resistance to Puccinia sorghi7: dominant Rp7 resistant
 
   Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Variation: September 1st, 2003
9 days agobd1 branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy
7.05
GRMZM2G307119
Luo, HS, et al. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00043   At5g18560 (TAIR)
LOC_Os01g21820 (MSU/TIGR)
Os07g0669500 (Gramene)
Reference: February 24th, 2021
Gene Product: July 27th, 2009
Variation: August 13th, 2011
Gene Model: July 14th, 2011
9 days agorp3 resistance to Puccinia sorghi3: dominant Rp3 resistant
3.04
AC230011.2_FG002
Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Gene Product: December 3rd, 2012
Variation: October 8th, 2008
Gene Model: December 3rd, 2012
9 days agorp4 resistance to Puccinia sorghi4: dominant Rp4 resistant
4.01 - 4.02
   Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Variation: September 1st, 2003
9 days agorp5 resistance to Puccinia sorghi5: dominant Rp5 resistant
10.01 - 10.01
   Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Variation: September 1st, 2003
9 days agorpp9 resistance to Puccinia polysora and Puccinia sorghi9: dominant Rpp9 resistant
10.01
   Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Variation: August 19th, 2013
9 days agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
   Hu, Y et al. 2021. Nature communications 12:1227     Reference: February 24th, 2021
Gene Product: November 4th, 2014
Variation: January 9th, 2019
9 days agosu1 sugary1: endosperm wrinkled and translucent when dry; starch debranching enzyme I absent in developing endosperm, phytoglycogen but no debranching enzyme in germinating seeds; su1-am sugary-amylaceous; su1-st recessive starchy; application: the "sweet corn" gene - recessive kernels are creamy-sweet at milk stage
4.05
   Hu, Y et al. 2021. Nature communications 12:1227     Reference: February 24th, 2021
Gene Product: April 21st, 2016
Variation: June 6th, 2016
9 days agozim28 ZIM-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.02
GRMZM2G116614
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Variation: September 1st, 2003
Gene Model: December 6th, 2016
9 days agozmm14 Zea mays MADS14: during spikelet development zmm4 probably works as a selector gene which is involved in distinguishing the upper and lower floret
1.02
GRMZM2G099522
Luo, HS, et al. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00043     Reference: February 24th, 2021
Variation: August 28th, 2013
Gene Model: August 14th, 2017
9 days agozim1 ZIM-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim10 ZIM-transcription factor 10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim11 ZIM-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim12 ZIM-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim13 ZIM-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim15 ZIM-transcription factor 15: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim16 ZIM-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim19 ZIM-transcription factor 19: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim20 ZIM-transcription factor 20: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim21 ZIM-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim22 ZIM-transcription factor 22: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim23 ZIM-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim24 ZIM-transcription factor 24: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim25 ZIM-transcription factor 25: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim26 ZIM-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim27 ZIM-transcription factor 27: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim29 ZIM-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim3 ZIM-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim30 ZIM-transcription factor 30: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim31 ZIM-transcription factor 31: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim32 ZIM-transcription factor 32: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Variation: February 17th, 2019
9 days agozim33 ZIM-transcription factor 33: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim34 ZIM-transcription factor 34: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim35 ZIM-transcription factor 35: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim36 ZIM-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.Belongs to the ZML subfamily within the TIFY family. myb11 interacts with zml2 to repress the bm3 (comt) gene. Related to wound induced lignin biosyntheses
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim4 ZIM-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim5 ZIM-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim6 ZIM-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim7 ZIM-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim8 ZIM-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim9 ZIM-transcription factor 9: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models. similar to major facilitator protein of A. thaliana
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agoumc1770  :
1.04
GRMZM2G072448
    Variation: February 15th, 2007
Gene Model: February 24th, 2021
9 days agobde1 bearded-ear1: floral development MADS box transcription factor; recessive mutant has silky-polytypic-like ear
5.06
   Luo, HS, et al. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00043   AT2G45650 (TAIR) Reference: February 24th, 2021
Gene Product: April 1st, 2011
Variation: October 5th, 2009
9 days agozim14 ZIM-transcription factor 14:
9.07
GRMZM2G036288
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: December 6th, 2016
9 days agorp8 resistance to Puccinia sorghi8: resistance conferred by heterozygote Rp8-A/Rp8-B only; Rp8-C confers no known resistance
6.04
   Quade, A et al. 2021. Phytopathology pp.doi: 10.1094/PHYTO-11-20-0524-R     Reference: February 24th, 2021
Variation: June 29th, 2005
9 days agosi1 silky1: (aka ts8, ms-si) multiple silks in ear; sterile tassel with silks
6.01
   Luo, HS, et al. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00043     Reference: February 24th, 2021
Variation: November 2nd, 2015
9 days agomatl1 matrilineal1: encodes a pollen-specific phospholipase; novel edits lead to a 6.7% haploid induction rate
 
GRMZM2G471240
Meng, DX et al. 2021. Mol Breed 41:20     Reference: February 24th, 2021
Gene Product: June 12th, 2020
Variation: February 10th, 2017
Gene Model: January 25th, 2017
9 days agodmp1 DUF679 domain membrane protein1: mutants enhance haploid induction
 
GRMZM2G465053
Meng, DX et al. 2021. Mol Breed 41:20     Reference: February 24th, 2021
Gene Product: June 10th, 2019
Variation: June 10th, 2019
Gene Model: June 10th, 2019
9 days agosi3 silky3: mutants have silky ears and tassels; up regulated in mutant plants
 
AC209624.2_FG001
Luo, HS, et al. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00043     Reference: February 24th, 2021
Gene Product: October 2nd, 2020
Variation: October 2nd, 2020
Gene Model: October 1st, 2020
9 days agozim41 ZIM-transcription factor 41:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim42 ZIM-transcription factor 42:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim17 ZIM-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G327263
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: January 20th, 2021
9 days agozim37 ZIM-transcription factor 37:
 
GRMZM2G303161
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: February 23rd, 2021
9 days agozim38 ZIM-transcription factor 38:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim39 ZIM-transcription factor 39:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim40 ZIM-transcription factor 40:
 
GRMZM2G442458
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: February 23rd, 2021
9 days agozim44 ZIM-transcription factor 44:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim45 ZIM-transcription factor 45:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agozim46 ZIM-transcription factor 46:
 
GRMZM2G022514
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: February 23rd, 2021
9 days agozim47 ZIM-transcription factor 47:
 
   Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
9 days agocenH3 centromeric histone H3:
6.06
GRMZM2G158526
Meng, DX et al. 2021. Mol Breed 41:20     Reference: February 24th, 2021
Gene Product: December 24th, 2015
Variation: January 21st, 2021
Gene Model: October 24th, 2011
9 days agozim18 ZIM-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G145412
Sun, PD et al. 2021. PLoS One 16:e0247271     Reference: February 23rd, 2021
Gene Product: February 24th, 2021
Gene Model: December 6th, 2016
10 days agobnlg1811  :
1.04
GRMZM2G142390
    Variation: September 29th, 2010
Gene Model: February 23rd, 2021
11 days agocg1 corngrass1: semidominant Cg1 plants have narrow leaves, extreme tilleringCg1 encodes two tandem miR156 genes that are overexpressed in the meristem and lateral organs. George Chuck, 2007
3.02
GRMZM2G022489
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 17th, 2016
Variation: August 25th, 2011
Gene Model: April 5th, 2013
Recommended by George Chuck:
September 25th, 2007
11 days agospi1 sparse inflorescence1: mutant tassels have fewer branches and spikelets, and its ears are small, with fewer kernels
3.08
GRMZM2G025222
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 18th, 2018
Variation: September 5th, 2019
Gene Model: April 24th, 2013
Recommended by Lisa Harper:
October 7th, 2008
11 days agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
GRMZM5G862109
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: July 5th, 2019
Variation: December 4th, 2013
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
11 days agoscro1 scarecrow1: mRNA expressed in endodermis and quiescent center of root, influencing radial pattern
4.08
GRMZM2G131516
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 24th, 2019
Variation: June 24th, 2019
Gene Model: November 11th, 2012
Recommended by Ed Coe:
January 25th, 2007
11 days agomwp1 milkweed pod1: leaf development transcription factor controlling abaxial cell fate, delineation of leaf margins, initiation of vascular and photosynthetic tissues.
7.02
GRMZM2G082264
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 8th, 2008
Variation: January 30th, 2010
Gene Model: August 6th, 2014
Recommended by Mary Schaeffer (Polacco):
September 8th, 2008
11 days agons2 narrow sheath2: embryonic transcription factor; duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 25th, 2017
Variation: June 29th, 2005
11 days agoabph1 aberrant phyllotaxy1: decussate leaves and ear shoots (opposite at nodes) frequent; variable, recessive
2.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: April 20th, 2009
Variation: July 4th, 2009
11 days agoepc1 early phase change1: (was gef1) recessive eliminates or reduces first leaves, root and shoot apices aberrant
8.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agomrl1 midribless1: loss of midrib in juvenile leaves, occasionally in adult leaves
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agosem1 semaphore1: small kernels with reduced germination; plants brachytic with leaves that droop at maturity
9.00 - 9.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: May 19th, 2006
11 days agocle6 clavata3/esr-related6:
3.07
   Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
11 days agoan1 anther ear1: andromonoecious dwarf, intermediate stature; few tassel branches; responds to gibberellins; an1-6923 includes deletion of Bz2+
1.08
GRMZM2G081554
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 16th, 2012
Variation: May 13th, 2020
Gene Model: November 7th, 2011
11 days agoba1 barren stalk1: ear shoots and most tassel branches and spikelets absent
3.06
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 19th, 2012
Variation: March 18th, 2015
11 days agoba2 barren stalk2: like ba1 except tassel is normal (original description from Emerson, Beadle and Fraser 1935)
2.04 - 2.05
GRMZM2G399641
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: January 26th, 2019
Variation: January 26th, 2019
Gene Model: January 26th, 2019
11 days agobaf1 barren stalk fastigiate1: ear shoots often absent, or distorted and fused to culm at base; tassel branches erect, bundled, fused to culm at base
9.02
GRMZM2G072274
Strable, J. 2021. Mol Breed 41:19   LOC_Os06g04540 (MSU/TIGR)
Os06g0136900 (Gramene)
Reference: February 22nd, 2021
Gene Product: November 11th, 2017
Variation: August 15th, 2011
Gene Model: December 8th, 2014
11 days agobr2 brachytic2: like br1; mi1 is allelic and preceded (1935), but br2 name is retained due to long usagelike Arabidopsis ABC transporter B family member 1
1.06 - 1.07
GRMZM2G315375
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 1st, 2012
Variation: December 30th, 2019
Gene Model: April 28th, 2012
11 days agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
   Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: November 4th, 2014
Variation: December 4th, 2018
11 days agobv1 brevis plant1: short internodes, short plant
5.04 - 5.05
GRMZM2G366698
Strable, J. 2021. Mol Breed 41:19   LOC_Os02g27620 (MSU/TIGR)
Os02g0477700 (Gramene)
Reference: February 22nd, 2021
Gene Product: January 16th, 2016
Variation: January 16th, 2016
Gene Model: January 16th, 2016
11 days agoclt1 clumped tassel1: dominant Clt1 plants have variable dwarfing, developmental anomalies
8.06 - 8.06
GRMZM2G017305
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 15th, 2019
Variation: October 16th, 2019
Gene Model: October 15th, 2019
11 days agocr1 crinkly leaves1: plant short; leaves broad, crinkled, foreshortened
3.02
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agoct1 compact plant1: semi-dwarf plant, all parts reduced proportionately
8.02 - 8.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agod1 dwarf plant1: andromonoecious, short, compact plants; responds to gibberellins; d1-t intermediate in height
3.03
GRMZM2G036340
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 25th, 2014
Variation: October 30th, 2014
Gene Model: October 2nd, 2012
11 days agod3 dwarf plant3: like d1, plant short and compact; "d2" mutation(s) are allelic (d2 is lapsed)
9.03
GRMZM2G093195
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 15th, 2012
Variation: May 19th, 2006
Gene Model: August 15th, 2012
11 days agod5 dwarf plant5: like d1
2.02
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: December 3rd, 2015
11 days agod8 dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins.
1.09
GRMZM2G144744
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: February 12th, 2007
Variation: August 29th, 2007
Gene Model: May 11th, 2011
11 days agod9 dwarf plant9: dominant D9 plants semidwarf with broad, dark green leaves; andromonoecious, not responsive to gibberellins; possible duplicate locus of d8
5.01
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: February 12th, 2007
Variation: January 30th, 2014
11 days agogt1 grassy tillers1: numerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialismputative transcription factor that reduces branching, and is induced by shade
1.04
GRMZM2G005624
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
11 days agodvd1 developmental disaster1:
5.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: March 20th, 2009
11 days agolgn1 liguleless narrow1: Mutant leaves are narrow and branching in the inflorescence is reduced.
 
GRMZM2G134382
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 10th, 2019
Variation: January 15th, 2016
Gene Model: January 3rd, 2013
11 days agohsf1 hairy sheath frayed1: dominant Hsf1 plants have pubescent sheaths and leaf margins; liguled enations at leaf marginscytokinin receptor; cytokinin responsive histidine protein kinase
5.06 - 5.07
GRMZM2G151223
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 20th, 2016
Variation: August 23rd, 2019
Gene Model: August 23rd, 2019
11 days agoid1 indeterminate growth1: requires extended growth for flowering; vegetatively totipotent with gt1 and factors for perennialism
1.08
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: January 3rd, 2015
Variation: August 3rd, 2015
11 days agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: December 6th, 2013
11 days agola1 lazy plant1: prostrate growth habit
4.03 - 4.04
GRMZM2G135019
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 9th, 2013
Variation: February 26th, 2015
Gene Model: October 8th, 2013
11 days agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: December 18th, 2014
Variation: August 17th, 2020
11 days agolg2 liguleless2: like lg1, less extreme
3.06
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 22nd, 2014
Variation: August 20th, 2014
11 days agolg4 liguleless4: dominant Lg4 plants lack ligule and auricle but show vestiges sporadically in bladeclass I homeobox; cDNA and genomic clones; sequence and expression similar to lg3 and knox5
8.05
GRMZM2G094241
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 22nd, 2014
Variation: May 18th, 2012
Gene Model: May 24th, 2012
11 days agolxm1 lax midrib1: dominant Lxm1 plants have leaves with wide, flat, flexible midrib. Leaf-like structures (flaps) can form on the surface of the leaf above veins.
3.06
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agomn1 miniature seed1: small, somewhat defective kernel, fully viable; invertase reduced
2.04
   Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: June 12th, 2018
Variation: April 13th, 2015
11 days agona1 nana plant1: short, erect dwarf; no response to gibberellins
3.06 - 3.08
GRMZM2G449033
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 24th, 2012
Variation: December 22nd, 2016
Gene Model: December 20th, 2011
11 days agona2 nana plant2: like na1
5.03
GRMZM2G057000
Strable, J. 2021. Mol Breed 41:19   AT3G19820 (TAIR) Reference: February 22nd, 2021
Gene Product: June 13th, 2016
Variation: June 13th, 2016
Gene Model: June 13th, 2016
11 days agonl1 narrow leaf1: leaf blade narrow, some white streaks
10.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 18th, 2007
11 days agotan1 tangled1: (was py1) leaves short, pointed, fine white streaks; displays abnormally oriented cell divisions and altered growth and development throughout the plant
6.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: June 29th, 2005
11 days agorgd1 ragged seedling1: (aka lbl1) seedling leaves narrow, thread-like, have difficulty in emerging; low temperature enhances expression
6.01 - 6.01
   Strable, J. 2021. Mol Breed 41:19   AT5G23570 (TAIR) Reference: February 22nd, 2021
Gene Product: December 18th, 2014
Variation: June 8th, 2015
11 days agors1 rough sheath1: shoot meristem and developing stem specific; dominant Rs1 plants have extreme ligule disorganization (aka kn2)
7.00
GRMZM2G028041
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 30th, 2015
Variation: November 18th, 2013
Gene Model: September 30th, 2015
11 days agors2 rough sheath2: short, zigzag plants with warty, distorted sheaths and leaves
1.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: May 9th, 2009
11 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
11 days agote1 terminal ear1: stalked ear appendages at tip; varying to infolded ears
3.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: July 24th, 2017
11 days agotp1 teopod1: dominant Tp1 plants have many tillers, narrow leaves, many small partially podded ears, tassel simple
7.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: October 24th, 2005
11 days agotp2 teopod2: like tp1
10.04 - 10.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: October 24th, 2005
11 days agotru1 tassels replace upper ears1: upper ear branches tassel-like, tillers bear ears
3.04 - 3.10
GRMZM2G039867
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: December 17th, 2013
Variation: December 18th, 2013
Gene Model: December 17th, 2013
11 days agovg1 vestigial glume1: dominant Vg1 glumes very small, cob and anthers exposed; upper leaves have scant ligules
1.07
GRMZM2G079805
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 10th, 2019
Variation: September 1st, 2003
Gene Model: June 10th, 2019
11 days agovp8 viviparous8: embryo fails to become dormant; chlorophyll and carotenoids unaffected; small, pointed-leaf seedlings
1.11
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: November 29th, 2012
Variation: June 4th, 2018
11 days agocnr1 Cell Number Regulator1:
 
GRMZM2G015941
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: April 28th, 2020
Gene Model: April 23rd, 2020
11 days agothi2 thiamine biosynthesis2: cDNA closely similar to sequence of thi1, which complements yeast thi4thiamine auxotroph; progressive elimination of leaf blade, successive younger leaves most affected; generally tasselless
3.09
GRMZM2G074097
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: February 1st, 2013
Variation: August 3rd, 2013
Gene Model: January 31st, 2013
11 days agocle18 clavata3/esr-related18: candidate for clavata3 (CLV3) ortholog
5.03
AC233959.1_FG003
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Variation: September 1st, 2003
Gene Model: June 27th, 2018
11 days agormr6 required to maintain repression6: Recessive rmr6 plants show reversions of paramutant pl1 and r1recessive changes B' phenotype to dark; like mop1
1.06
GRMZM2G007681
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: March 27th, 2013
Variation: March 28th, 2013
Gene Model: March 27th, 2013
11 days agowab1 Wavy auricles in blades1: dominant confers auricle tissue in blade portion of leafrecessive mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants
2.06 - 2.07
GRMZM2G110242
Strable, J. 2021. Mol Breed 41:19   LOC_Os09g24480 (MSU/TIGR)
Os09g0410500 (Gramene)
Reference: February 22nd, 2021
Gene Product: September 14th, 2016
Variation: November 2nd, 2014
Gene Model: November 2nd, 2014
11 days agoocl1 outer cell layer1: homeobox protein expressed in outer layers of embryo axis and in developing endosperm; maps near glossy6 on chromosome 3 (Ingram et al 1999)
3.04
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: April 12th, 2005
11 days agorel2 ramosa1 enhancer locus2: rel2 mutants dramatically increase the formation of long branches in ears of both ra1 and ra2 mutants
10.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 23rd, 2018
Variation: September 5th, 2019
11 days agocr4 crinkly4: crinkly seedling leaves; plants short with rough, sometimes knot-bearing, extremely crinkly leaves and club tassel; aleurone mosaic
10.02
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: July 17th, 2006
11 days agobige1 big embryo1: mutant causes accelerated leaf and root initiation as well as enlargement of the embryo scutellum
5.00
GRMZM2G148937
Strable, J. 2021. Mol Breed 41:19   At1g71870 (TAIR)
LOC_Os03g62270 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: August 17th, 2015
Variation: August 27th, 2015
Gene Model: August 16th, 2015
11 days agoiaa38 Aux/IAA-transcription factor 38: similar to Arabidopsis auxin-responsive protein IAA27Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.04
GRMZM2G035465
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
Gene Model: September 19th, 2018
11 days agogrf1 general regulatory factor1: cDNA sequence; protein co-immunoprecipitates with G-box binding complex but does not bind to DNA;low copy number
2.04
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: December 13th, 2012
11 days agoxlg1 extra-large guanine nucleotide-binding protein1: mutant knockout has reduced plant height; triple mutants are lethal at the seedling stage (Wu et al., 2018)
1.05
GRMZM2G127739
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 1st, 2018
Variation: May 1st, 2018
Gene Model: June 13th, 2017
11 days agotsh4 tassel sheath4: tsh4 mutant tassels have one to five long tassel branches, instead of ~13 observed in non-mutant W22. In place of tassel branches, long bract leaves were present, clustered at the base of the tassel.
7.03
GRMZM2G307588
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 5th, 2019
Variation: October 8th, 2011
Gene Model: October 6th, 2011
11 days agocct1 CO CO-LIKE TIMING OF CAB1 protein domain1: photoperiod response locus; confers later flowering in teosintes under longer day lengths; many maize inbred lines, including some adapted to tropical regions, have cct1 alleles insensitive to photoperiod (Hung et al 2012)
 
GRMZM2G381691
Strable, J. 2021. Mol Breed 41:19   AT5G24930 (TAIR)
LOC_Os07g15770 (MSU/TIGR)
Os07g0261200 (Gramene)
Reference: February 22nd, 2021
Gene Product: June 18th, 2018
Variation: December 27th, 2017
Gene Model: July 17th, 2012
11 days agoabi12 ABI3-VP1-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 20th, 2019
11 days agoabi19 ABI3-VP1-transcription factor 19: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.Grimault et al named this loci ZmAFL2- by homology to Arabidopsis, 2015
 
   Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: July 29th, 2015
Variation: November 27th, 2020
11 days agogras37 GRAS-transcription factor 37: In double mutants with scro1, most leaf veins are separated by one rather than two mesophyll cells Hughes et al., 2019)
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 24th, 2019
Variation: June 24th, 2019
11 days agohb48 Homeobox-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: April 7th, 2017
11 days agohb76 Homeobox-transcription factor 76: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: April 7th, 2017
11 days agomads69 MADS-transcription factor 69: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.contributes to natural variation in flowering time in maize
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: October 5th, 2018
11 days agoub3 unbranched3: double mutant shows decrease in tassel branch number
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 5th, 2019
Variation: December 17th, 2014
11 days agoub2 unbranched2: double mutant shows decrease in tassel branch number
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 5th, 2019
Variation: December 17th, 2014
11 days agofea4 fasciated ear4: Mutants are semidwarfed with fasciated ears and tassels as well as greatly enlarged vegetative and inflorescence meristems.
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 21st, 2018
Variation: July 7th, 2017
11 days agomterf10 mTERF domain protein10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: February 19th, 2015
Variation: June 14th, 2019
11 days agosdw2 semi-dwarf2: dominant Sdw2, short plant, 1/3-1/2 normal height, with normal green erect leaves; does not respond to gibberellins; no anthers in ear
3.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: July 7th, 2009
11 days agophyB1 phytochromeB1: phyB1 mutants have elongated mesocotyl under red light. Double mutant with phyB2 is pale, narrow with elongated leaf blades, elongated internodes, less anthocyanin in sheath tissues, and earlier flowering time.
1.03
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 24th, 2007
Variation: May 19th, 2020
11 days agotls1 tasselless1: encodes an aquaporin; plants generally lack tassels, have ear shoots but ear development is variable ranging from no seed set to a few kernels on a small ball-shaped cob; in some backgrounds, pubescent, leathery at 4-8 leaf stage; similar to bs1 of Woodworth and Micu. Phenotypes corrected by boron spraying (Leonard et al 2014).Boron content reduced; application of boron rescues the mutant phenotype (Durbk et al. 2014)
1.11 - 1.12
GRMZM2G176209
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: April 3rd, 2014
Variation: July 29th, 2014
Gene Model: April 2nd, 2014
11 days agoumc1892  : candidate for clavata3 (CLV3) ortholog
3.01
GRMZM2G102770
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: April 2nd, 2018
11 days agockx10 cytokinin oxidase10: Mapped the minor band to this site.
1.07
GRMZM2G348452
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: April 4th, 2014
Variation: September 1st, 2003
Gene Model: September 18th, 2018
11 days agonpi241a  : candidate for clavata3 (CLV3) ortholog
1.11
GRMZM2G474685
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Variation: October 20th, 2017
Gene Model: October 19th, 2017
11 days agomybr17 MYB-related-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.09
GRMZM2G071977
Guo, Y et al. 2021. Crop J doi: 10.1016/j.cj.2021.01.002     Reference: February 22nd, 2021
Variation: September 1st, 2003
Gene Model: August 31st, 2018
11 days agophyB2 phytochromeB2: phyB2 mutant is early flowering. Double mutant with phyB1 is pale, narrow with elongated leaf blades and elongated internodes, and contains less anthocyanin in sheath tissues.
9.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 24th, 2007
Variation: May 20th, 2020
11 days agozfl1 zea floricaula/leafy1: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
10.06
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: February 20th, 2007
11 days agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: October 9th, 2014
11 days agopdlk2 pyruvate dehydrogenase (lipoamide) kinase2:
9.04
GRMZM2G400806
Thelen, J et al. 1998. J Biol Chem 273:26618-26623     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 22nd, 2021
11 days agocyp8 cytochrome P-450 8: developing inflorescence, cDNA clone, assayed in transgenic yeast microsomes
1.08
   Strable, J. 2021. Mol Breed 41:19   LOC_Os10g26340 (MSU/TIGR) Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: October 24th, 2012
11 days agobif2 barren inflorescence2: recessive few-branched tassel, normally no pollen shed; variable expression on ear with 0-2 spikelets produced at each floral node
1.05
   Strable, J. 2021. Mol Breed 41:19   AT2G34650 (TAIR) Reference: February 22nd, 2021
Gene Product: July 19th, 2012
Variation: October 23rd, 2013
11 days agodlf1 delayed flowering1: tall late plant with additional nodes and leaves at flowering; no apparent response to day length
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 21st, 2018
Variation: June 25th, 2020
11 days agonld1 narrow leaf dwarf1: small, compact plant with narrow, rolled leaves that are bleached pale green, especially along the midrib
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: August 7th, 2007
11 days agotp3 teopod3: semi-dominant that increases tillering and decreases number of lateral tassel branches; originally identified by J. Beckett, may be allele of Cg1
3.02
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: October 27th, 2005
11 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 25th, 2017
Variation: February 20th, 2015
11 days agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
GRMZM2G137954
Zhang, HW et al. 2021. Mol Breed 41:18   LOC_Os02g19820 (MSU/TIGR) Reference: February 22nd, 2021
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
11 days agogn1 gnarley1: dominant Gn1 characterized by reduced internodal length, sinuously curving culm, lack of distinct boundary between blade and sheath, extra silks
2.10
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Variation: May 30th, 2014
11 days agobrl3 bri1-like receptor kinase3: Encodes a brassinosteroid insensitive1-like receptor kinase.
4.05
GRMZM2G438007
Strable, J. 2021. Mol Breed 41:19   AT1G55610 (TAIR)
LOC_Os08g25380 (MSU/TIGR)
Reference: February 22nd, 2021
Variation: May 9th, 2018
Gene Model: May 9th, 2018
11 days agosol1 sympathy for the ligule1: Mo17-contributed allele suppressed Lgn1-R mutant phenotypes
1.04 - 1.04
GRMZM2G075262
Strable, J. 2021. Mol Breed 41:19   AT5G05190 (TAIR) Reference: February 22nd, 2021
Gene Product: June 21st, 2019
Variation: June 21st, 2019
Gene Model: October 16th, 2017
11 days agod10 dwarf plant10: From EMS pollen treatment, D10 is a tiny dwarf with fair tassel; tillers with tassel seed expression; not andromonoecious; leaves proportionally normal and stalk slender; shortened internodes
2.08 - 2.09
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: September 1st, 2003
11 days agodcl4 dicer-like4: (was rgd*-N766B) like rgd1
1.09
GRMZM2G050869
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 5th, 2006
Variation: July 27th, 2015
Gene Model: July 27th, 2015
11 days agona3 nana3: short plant with erect stiff leaves, like na1
4.05
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: August 2nd, 2011
11 days agogbp2 GTP binding protein2: cDNA sequence similar animal G protein beta-subunits; single copy
1.09
GRMZM2G045314
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 1st, 2018
Variation: December 19th, 2019
Gene Model: July 27th, 2016
11 days agoeta1 extended auricle1:
5.04
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: May 20th, 2006
11 days agoacs7 1-aminocyclopropane-1-carboxylate synthase7: mutations in the 3' end of the 4th Exon result in a semi-drawf phenotype; knockout mutants can give significantly taller plants
10.05
GRMZM5G894619
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 16th, 2016
Variation: April 23rd, 2020
Gene Model: January 21st, 2016
11 days agorld2 rolled leaf2: paralogous locus of rld1
1.01
GRMZM2G042250
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 6th, 2015
Variation: January 18th, 2010
Gene Model: October 6th, 2015
11 days agoopr7 12-oxo-phytodienoic acid reductase7: peroxisomal; jasmonic acid synthesis; opr7 opr8 double mutants are feminized, and have increased susceptibiliy to insect and fungal pests
 
GRMZM2G148281
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 3rd, 2010
Variation: December 16th, 2019
Gene Model: November 25th, 2013
11 days agoopr8 12-oxo-phytodienoic acid reductase8: peroxisomal; synthesis of jasmonic acid
4.05
GRMZM2G082087
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 3rd, 2010
Variation: December 16th, 2019
Gene Model: November 25th, 2013
11 days agodrl2 drooping leaf2: mutant enhances the phenotype of ifa1 mutants (a.k.a. drl1)
9.06
GRMZM2G102218
Strable, J. 2021. Mol Breed 41:19   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: October 16th, 2015
Variation: July 12th, 2017
Gene Model: October 16th, 2015
11 days agoifa1 indeterminate floral apex1: mutants have perturbed floral and inflorescence meristems as well as droopy leaves with increased angle
 
GRMZM2G088309
Strable, J. 2021. Mol Breed 41:19   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: October 16th, 2015
Variation: July 13th, 2017
Gene Model: October 16th, 2015
11 days agorgd2 ragged seedling2: mutant expression is variable from reduced midrib/moderately narrow leaf to filamentous or even radial leaves
1.04
GRMZM5G852170
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: August 12th, 2016
Variation: July 6th, 2010
Gene Model: August 17th, 2017
11 days agobrs1 brassinosteroid synthesis1:
1.03
GRMZM2G065635
Zhang, HW et al. 2021. Mol Breed 41:18   AT3G50660 (TAIR) Reference: February 22nd, 2021
Gene Product: September 20th, 2010
Variation: November 7th, 2013
Gene Model: October 3rd, 2012
11 days agocca1 circadian clock associated1: myb transcription factor - clock gene
 
GRMZM2G014902
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 31st, 2016
Variation: March 18th, 2011
Gene Model: July 30th, 2016
11 days agovt2 vanishing tassel2: inflorescence development; TRP-dependent auxin synthesis
 
GRMZM2G127308
Strable, J. 2021. Mol Breed 41:19   AT1G70560 (TAIR) Reference: February 22nd, 2021
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
11 days agobrd1 brassinosteroid-deficient dwarf1: Mutant plants have essentially no internode elongation and exhibit no etiolation response when germinated in the dark.
 
GRMZM2G103773
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: February 18th, 2012
Variation: August 16th, 2019
Gene Model: February 15th, 2012
11 days agoccd8 carotenoid cleavage dioxygenase8: Mutants have mild branching, short stature, small ear size, and narrow-stalk
 
GRMZM2G446858
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 20th, 2012
Variation: September 21st, 2012
Gene Model: September 20th, 2012
11 days agolimtf11 LIM-transcription factor 11: Orthologous to Arabidopsis DA1
 
GRMZM2G017845
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: June 24th, 2019
Variation: June 24th, 2019
Gene Model: October 10th, 2012
11 days agodwil1 dwarf & irregular leaf1: mutant plants have shorter internodes, shorter, wider and wrinkled leaves, as well as smaller leaf angle
 
GRMZM2G013657
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: July 5th, 2019
Variation: March 18th, 2013
Gene Model: March 12th, 2013
11 days agod11 dwarf11: dominant mutant that appears to inhibit GA biosynthesis.
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: June 18th, 2013
11 days agozar1 Zea mays ARGOS1: affects yield, and response to drought
 
GRMZM2G446201
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: August 3rd, 2015
Gene Model: April 14th, 2014
11 days agoga20ox3 gibberellin 20-oxidase3: mutants have a semidwarf phenotype
 
GRMZM2G368411
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 28th, 2014
Variation: July 10th, 2020
Gene Model: October 29th, 2014
11 days agoga20ox5 gibberellin 20-oxidase5:
 
GRMZM2G049418
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 28th, 2014
Variation: July 6th, 2017
Gene Model: October 29th, 2014
11 days agoabph2 aberrant phyllotaxy2: Dominant mutant develops an enlarged SAM and decussate phyllotaxy
 
   Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: January 21st, 2021
Variation: January 27th, 2015
11 days agobri1a brassinosteroid insensitive1a: Encodes a brassinosteroid receptor
 
GRMZM2G048294
Strable, J. 2021. Mol Breed 41:19   AT4G39400 (TAIR)
LOC_Os01g52050 (MSU/TIGR)
Reference: February 22nd, 2021
Variation: July 17th, 2015
Gene Model: July 16th, 2015
11 days agobri1b brassinosteroid insensitive1b: Encodes a brassinosteroid receptor
 
GRMZM2G449830
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: July 17th, 2015
Gene Model: July 16th, 2015
11 days agobrl1 bri1-like receptor kinase1: Encodes a brassinosteroid insensitive1-like receptor kinase.
 
GRMZM2G092604
Strable, J. 2021. Mol Breed 41:19   AT1G55610 (TAIR)
LOC_Os09g12240 (MSU/TIGR)
Reference: February 22nd, 2021
Variation: July 17th, 2015
Gene Model: July 16th, 2015
11 days agobrl2 bri1-like receptor kinase2: Encodes a brassinosteroid insensitive1-like receptor kinase.
 
GRMZM2G002515
Strable, J. 2021. Mol Breed 41:19   AT2G01950 (TAIR)
LOC_Os10g02500 (MSU/TIGR)
Reference: February 22nd, 2021
Variation: July 17th, 2015
Gene Model: July 16th, 2015
11 days agocle2 clavata3/esr-related2: candidate for clavata3 (CLV3) ortholog
 
AC198414.2_FG001
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: December 22nd, 2018
11 days agoGRMZM2G350428  : candidate for clavata3 (CLV3) ortholog
 
GRMZM2G350428
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agoGRMZM2G480050  : candidate for clavata3 (CLV3) ortholog
 
GRMZM2G480050
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle8 clavata3/esr-related8: candidate for clavata3 (CLV3) ortholog
 
AC199043.2_FG002
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: December 22nd, 2018
11 days agoGRMZM2G423617  : candidate for clavata3 (CLV3) ortholog
 
GRMZM2G423617
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agoGRMZM2G391746  : candidate for clavata3 (CLV3) ortholog
 
GRMZM2G102770
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle13 clavata3/esr-related13: candidate for clavata3 (CLV3) ortholog
 
AC212347.3_FG002
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: December 22nd, 2018
11 days agocle15 clavata3/esr-related15: candidate for clavata3 (CLV3) ortholog
 
AC210731.3_FG002
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: December 22nd, 2018
11 days agocle16 clavata3/esr-related16: candidate for clavata3 (CLV3) ortholog
 
GRMZM5G818232
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agoGRMZM2G427603  : candidate for clavata3 (CLV3) ortholog
 
GRMZM2G427603
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle20 clavata3/esr-related20: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G008651
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle21 clavata3/esr-related21: candidate for clavata3 (CLV3) ortholog
 
GRMZM5G826174
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle22 clavata3/esr-related22: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G070192
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle23 clavata3/esr-related23: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G098918
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle24 clavata3/esr-related24: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G123818
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle25 clavata3/esr-related25: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G525788
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle26 clavata3/esr-related26: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G473147
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle27 clavata3/esr-related27: candidate for clavata3 (CLV3) ortholog
 
GRMZM2G468688
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: February 22nd, 2021
Gene Model: September 17th, 2016
11 days agocle29 clavata3/esr-related29: candidate for clavata3 (CLV3) ortholog
 
AC206319.2_FG004
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Gene Model: December 22nd, 2018
11 days agonod1 narrow odd dwarf1: mutants are small plants with narrow leaves
 
GRMZM2G027821
Strable, J. 2021. Mol Breed 41:19   AT4G35920 (TAIR)
LOC_Os03g06120 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: April 28th, 2020
Variation: September 8th, 2018
Gene Model: March 4th, 2017
11 days agotac1 tiller angle control1: Regulates leaf angle; ortholog of OsTAC1
 
GRMZM2G447987
Strable, J. 2021. Mol Breed 41:19   LOC_Os09g35980 (MSU/TIGR) Reference: February 22nd, 2021
Variation: November 13th, 2017
Gene Model: November 11th, 2017
11 days agonut1 necrotic upper tips1: Ac-tagged mutation, necrotic upper leaf tips and blasted tassel.
 
GRMZM2G041668
Strable, J. 2021. Mol Breed 41:19   AT1G12260 (TAIR)
LOC_Os06g01480 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: July 8th, 2019
Variation: August 11th, 2020
Gene Model: November 15th, 2017
11 days agocct2 CO CO-LIKE TIMING OF CAB1 protein domain2: photoperiod response locus; confers later flowering in teosintes under longer day lengths; knockout mutant causes early flowering under long days
 
GRMZM2G004483
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 18th, 2018
Variation: December 27th, 2017
Gene Model: December 27th, 2017
11 days agourb2 unhealthy ribosome biogenesis2: mutant showed decreased ratios of 60S/40S and 80S/40S and increased ratios of polyribosomes; had thin kernels and small seedlings
 
GRMZM2G457178
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Variation: February 26th, 2018
Gene Model: February 26th, 2018
11 days agoxlg2 extra-large guanine nucleotide-binding protein2: mutant knockout has reduced plant height; triple mutants are lethal at the seedling stage (Wu et al., 2018)
 
GRMZM2G016858
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: May 1st, 2018
Variation: May 1st, 2018
Gene Model: May 1st, 2018
11 days agocsld1 cellulose synthase-like D1: participates in cell wall polysaccharides formation during cell division; mutants have narrow leaves
 
GRMZM2G015886
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: October 7th, 2016
Variation: October 18th, 2018
Gene Model: October 18th, 2018
11 days agopve1 punctate vascular expression1: PVE1 may function downstream of RGD2 in a pathway that intersects and interacts with the ta-siARF pathway (Zhang et al 2012)
5.03
AC211276.4_FG008
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Variation: June 16th, 2012
Gene Model: June 15th, 2012
11 days agosmk4 small kernel4: exclusively localized in mitochondria; mutant abolishes C-to-U editing at position 1489 of the cytochrome c oxidase1 (cox1) transcript, causing an amino acid change from serine to proline at 497
 
GRMZM2G459532
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: December 27th, 2016
Variation: July 24th, 2019
Gene Model: July 24th, 2019
11 days agosmk9 small kernel9: mutants exhibit delayed endosperm and embryo development
 
GRMZM2G420723
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: December 27th, 2016
Variation: July 30th, 2019
Gene Model: July 30th, 2019
11 days agovq42 VQ motif-transcription factor42:
 
GRMZM2G151909
Guo, Y et al. 2021. Crop J doi: 10.1016/j.cj.2021.01.002     Reference: February 22nd, 2021
Gene Product: August 31st, 2019
Gene Model: August 31st, 2019
11 days agoili1 increased leaf inclination1: knockout mutants confer decreased leaf angle
 
GRMZM2G072820
Strable, J. 2021. Mol Breed 41:19   LOC_Os04g54900 (MSU/TIGR)
Os04g0641700 (Gramene)
Reference: February 22nd, 2021
Gene Product: September 14th, 2016
Variation: September 19th, 2019
Gene Model: September 19th, 2019
11 days agotin1 tiller number1: variant has multiple tillers
 
GRMZM2G059088
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: December 6th, 2019
Variation: December 6th, 2019
Gene Model: December 6th, 2019
11 days agoibh1 increased leaf inclination1-binding bhlh 1:
 
GRMZM2G388823
Strable, J. 2021. Mol Breed 41:19   AT2G43060 (TAIR) Reference: February 22nd, 2021
Gene Product: September 14th, 2016
Variation: January 28th, 2020
Gene Model: January 28th, 2020
11 days agoknr6 kernel number per row6: involved in determination of pistillate floret number and ear lengthKNR6 appears to phosphorylate an Arf GTPase-activating protein, a myelin basic protein, as well as itself. Jia et al, 2020qKNR6 was first identified as a QTL for "Kernel number per row".
 
GRMZM2G119714
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: May 13th, 2014
Variation: February 20th, 2020
Gene Model: February 20th, 2020
11 days agolac21 laccase21:
 
GRMZM2G447271
Guo, Y et al. 2021. Crop J doi: 10.1016/j.cj.2021.01.002     Reference: February 22nd, 2021
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
11 days agobgh1 big grain1 homolog1:
 
GRMZM2G178852
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Variation: May 2nd, 2020
Gene Model: May 2nd, 2020
11 days agokw9 kernel weight9: Involved in kernel weight variation
 
GRMZM2G171994
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: December 27th, 2016
Gene Model: June 2nd, 2020
11 days agocle30 clavata3/esr-related30: null alleles enhance meristem size and grain-yield-related traits
 
GRMZM2G434380
Liu, L et al. 2021. Nature Plants pp.doi: 10.1038/s41477-021-00858-5     Reference: February 22nd, 2021
Gene Product: February 22nd, 2021
Gene Model: February 22nd, 2021
11 days agoubl1 U6 biogenesis like1: plays an important role in kernel and seedling development by influencing pre-mRNA splicing
 
GRMZM2G156575
Zhang, HW et al. 2021. Mol Breed 41:18     Reference: February 22nd, 2021
Gene Product: November 8th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
11 days agomads67 MADS-transcription factor 67: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.04
GRMZM2G147716
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 1st, 2003
Gene Model: February 7th, 2019
11 days agogif1 growth-regulating-factor-interacting factor1: mutants are semi-dwarf with narrow leaves and fasciated inflorescence meristems
1.10
GRMZM2G180246
Strable, J. 2021. Mol Breed 41:19   AT5G28640 (TAIR)
LOC_Os03g52320 (MSU/TIGR)
Reference: February 22nd, 2021
Gene Product: July 6th, 2015
Variation: February 6th, 2018
Gene Model: July 6th, 2015
11 days agocle5 clavata3/esr-related5: candidate for clavata3 (CLV3) ortholog
5.01
GRMZM5G875999
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: February 22nd, 2021
Variation: March 31st, 2005
Gene Model: September 17th, 2016
11 days agoasc1 asceapen1: Recessive plants shortened, infertile with narrowed leaves; stomatal patterns altered
7.02
GRMZM2G140633
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: June 26th, 2009
Variation: June 29th, 2009
Gene Model: December 8th, 2014
11 days agoIDP1653  :
9.04
GRMZM2G462803
    Variation: March 31st, 2005
Gene Model: February 22nd, 2021
11 days agoelm1 elongated mesocotyl1: elongated mesocotyl, pale green seedling leaves; pale green plant internodes; increased plant height; early flowering; phytochrome deficient.
8.06
   Strable, J. 2021. Mol Breed 41:19   AT3G09150 (TAIR) Reference: February 22nd, 2021
Gene Product: May 7th, 2006
Variation: March 30th, 2009
11 days agodcl101 dicer-like 101: mutant plants have 'fuzzy tassel' and reduced stature.
1.01
GRMZM2G040762
Strable, J. 2021. Mol Breed 41:19     Reference: February 22nd, 2021
Gene Product: September 5th, 2006
Variation: December 4th, 2014
Gene Model: November 12th, 2014
12 days agoumc1083  :
6.02
GRMZM2G474777
    Variation: September 1st, 2003
Gene Model: February 21st, 2021
12 days agoAW244963  :
8.03
GRMZM2G071219
    Variation: July 29th, 2004
Gene Model: February 21st, 2021
12 days agoIDP1462  :
7.00
GRMZM2G369284
    Variation: March 31st, 2005
Gene Model: February 21st, 2021
12 days agoIDP2464  :
7.02
GRMZM5G855005
    Variation: March 31st, 2005
Gene Model: February 21st, 2021
12 days agoIDP639  :
7.02
GRMZM2G060118
    Variation: March 31st, 2005
Gene Model: February 21st, 2021
13 days agoumc1133  :
6.01
GRMZM2G466498
    Variation: September 1st, 2003
Gene Model: February 20th, 2021
13 days agoelfa6 elongation factor alpha6: shares 89-99% nucleotide sequence identity with genes elf1a to elf1g (aka clones eEF1Aa to eEF1Ag).
7.04
GRMZM2G057535
Carneiro, N et al. 1999. Plant Mol Biol 41:801-813     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 20th, 2021
14 days agogdh1 glutamic dehydrogenase1: electrophoretic mobility; null allele is known (cold sensitivity); intra/interlocus hybrid bands occur - merge with GenBank sequences inferred by overgo map location matches
1.11
   Zhao, YJ et al. 2021. Biosci Biotechnol Biochem 85:262-271     Reference: February 19th, 2021
Gene Product: September 1st, 2003
Variation: August 7th, 2006
14 days agomagi92568  :
6.05
GRMZM5G850966
    Variation: March 31st, 2005
Gene Model: February 19th, 2021
14 days agoIDP778  :
6.01
GRMZM2G099619
    Variation: March 31st, 2005
Gene Model: February 19th, 2021
15 days agocsu1120  :
6.01
GRMZM2G130173
Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 18th, 2021
15 days agopeamt1 phosphoethanolamine N-methyltransferase1: involved in betaine synthesis
 
GRMZM2G122296
Niu, G-L et al. 2018. Int. J. Mol. Sci. 191:doi: 10.3390/ijms19010191     Reference: January 9th, 2018
Gene Product: February 18th, 2021
Gene Model: January 9th, 2018
15 days agoIDP1467  :
5.04
GRMZM5G852608
    Variation: March 31st, 2005
Gene Model: February 18th, 2021
16 days agocsu661  :
4.06
GRMZM2G394528
    Variation: September 1st, 2003
Gene Model: February 17th, 2021
16 days agoIDP1676  :
4.06
AC204891.4_FG001
    Variation: March 31st, 2005
Gene Model: February 17th, 2021
17 days agogdcp1 glycine decarboxylase1: cDNA sequences, SSR umc1526
10.01
GRMZM2G104310
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: September 1st, 2003
Variation: October 6th, 2015
Gene Model: October 6th, 2015
17 days agonec4 necrotic4: seedling yellow, leaf tips necrotic; lethal
2.02
GRMZM5G870342
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: December 17th, 2014
Variation: December 17th, 2014
Gene Model: December 17th, 2014
17 days agocpx2 coproporphyrinogen III oxidase2: duplicate to cpx1 (nec4)
10.06
GRMZM2G032282
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: December 17th, 2014
Variation: September 22nd, 2011
Gene Model: September 22nd, 2011
17 days agoumc1404  :
3.07
GRMZM2G069061
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
17 days agocps2 chloroplast protein synthesis2: CPN60 ortholog; 20-fold reduced RUBISCO, 2-fold reduced thylakoid polypeptides, decreased chloroplast polysomes (aka hcf133)Chaperonin60 a1. Molecular chaperone involved in Rubisco assembly. Also affects distribution of ribosomes on chloroplast mRNAs. (A. Barkan, 2015)
6.01 - 6.08
AC215201.3_FG005
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: October 3rd, 2011
Variation: December 30th, 2015
Gene Model: September 6th, 2011
17 days agopho1 starch phosphorylase1: amyloplast starch phosphorylase
1.10
GRMZM2G074158
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: March 26th, 2015
Gene Model: March 26th, 2015
17 days agoprpo1 protoporphyrinogen IX oxidase1: Ortholog of Arabidopsis PPOX/ PPO1. protoporphyrinogen oxidase. (A. Barkan, 2015)complements E coli mutant; recombinant protein has protoporphyrinogen oxidase activity (DeMarco et al 2000)
8.01
GRMZM2G039396
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: December 17th, 2014
Variation: December 30th, 2015
Gene Model: December 1st, 2014
17 days agodct1 dicarboxylic acid transporter1: plastid transporter, specific to mesophyll cells (Taniguchi et al 2004)
 
GRMZM2G040933
Weissmann, S et al. 2021. Genome Biology and Evolution 13:evaa251     Reference: February 16th, 2021
Gene Product: August 18th, 2014
Gene Model: August 18th, 2014
17 days agodct2 dicarboxylic acid transporter2: plastid transporter, specific to bundle sheath cells (Taniguchi et al 2004)
 
GRMZM2G086258
Weissmann, S et al. 2021. Genome Biology and Evolution 13:evaa251     Reference: February 16th, 2021
Gene Product: August 18th, 2014
Variation: January 28th, 2016
Gene Model: August 18th, 2014
17 days agoaco6 aconitase6:
 
GRMZM2G364988
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
17 days agosbe4 starch branching enzyme4:
 
GRMZM2G073054
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: June 6th, 2011
Gene Model: March 20th, 2020
17 days agoss2 starch synthase3:
 
GRMZM5G897776
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: October 14th, 2016
Gene Model: March 20th, 2020
17 days agochld1 Mg chelataseD1: One of 3 subunits predicted to form the Mg chelatase; see also oy1, l13.
5.00
   Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: June 11th, 2007
Variation: December 14th, 2020
17 days agochao3 chlorophyllide a oxygenase3:
 
   Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: February 12th, 2021
17 days agoupd1 uroporphyrinogen decarboxylase1:
 
   Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: September 1st, 2003
17 days agoidh3 isocitrate dehydrogenase3:
 
GRMZM2G025366
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: September 1st, 2003
Gene Model: February 16th, 2021
17 days agooxmt1 oxo-glutarate/malate transporter1: single copy, plastid tranporter specific to mesophyll cells (Taniguchi et al 2004)
 
GRMZM2G383088
Weissmann, S et al. 2021. Genome Biology and Evolution 13:evaa251     Reference: February 16th, 2021
Gene Product: August 18th, 2014
Gene Model: August 18th, 2014
17 days agoIDP697  :
3.04
GRMZM2G463580
    Variation: March 31st, 2005
Gene Model: February 16th, 2021
17 days agopcr1 protochlorophyllide reductase1: leaf cDNA csu349 similar to plant protochlorophyllide reductase
2.01
GRMZM2G084958
Li, TC et al. 2021. PeerJ 9:e10567     Reference: February 16th, 2021
Gene Product: June 8th, 2019
Variation: February 25th, 2013
Gene Model: October 8th, 2014
18 days agorif1 r-interacting factor1: activation of the a1 promotor
2.06
GRMZM2G049155
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: May 6th, 2008
Variation: January 5th, 2011
Gene Model: July 28th, 2016
Recommended by Edward Grow:
March 28th, 2008
18 days agoa1 anthocyaninless1: colorless aleurone, green or brown plant; brown pericarp with P1-rr
3.09
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: April 11th, 2013
Variation: August 25th, 2010
18 days agoa2 anthocyaninless2: like a1, but red pericarp with P1-rr
5.03
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 7th, 2012
Variation: September 1st, 2003
18 days agoacb2 Acyl-CoA-binding protein2:
9.03
GRMZM2G344634
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: January 26th, 2019
18 days agoa3 anthocyanin3: recessive intensifier of expression of R1 plant color alleles and of weakly expressed B1 alleles in plant tissue
3.08
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
18 days agob1 colored plant1: dominant B1 plants have anthocyanin in major plant tissues; some alleles affect aleurone and embryo color; regulates flavonoid enzymes; SSR umc1776
2.03
GRMZM2G172795
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: October 13th, 2010
Variation: February 14th, 2013
Gene Model: September 22nd, 2011
18 days agobz1 bronze1: modifies purple aleurone and plant color to pale or reddish brown; anthers yellow-fluorescent; allele bz1-m4 = sh1-bz1-m4; SSR phi017NCBI: UDPG-flavonoid 3-oxy glucosyl transferase
9.02
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: July 4th, 2018
Variation: July 13th, 2020
18 days agobz2 bronze2: like bz1; anthers not fluorescent; an1-6923 mutation includes deletion for Bz2; encodes a glutathione S-transferase conjugating anthocyanins into the vacuole
1.08
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: March 31st, 2008
18 days agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 16th, 2015
Variation: March 27th, 2013
18 days agoc2 colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins
4.08
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: November 14th, 2013
18 days agowhy1 whirly1: Chloroplast single-stranded nucleic acid binding protein. Promotes atpF splicing, 23S rRNA maturation. (A. Barkan, 2015)why1-3 mutant arrests embryogenesis at transition stage and allows the endosperm to develop largely normallywhy1-1 and why1-2 mutants exhibit albino to pale green seedling lethal, plastid ribosome deficient
6.01
GRMZM2G155662
Choi, JY et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koab022   AT1G14410 (TAIR)
LOC_Os06g05350 (MSU/TIGR)
Os06g0145800 (Gramene)
Reference: February 15th, 2021
Gene Product: July 22nd, 2009
Variation: July 1st, 2013
Gene Model: July 14th, 2011
18 days agoin1 intensifier1: intensifies aleurone anthocyanin pigments; In1-D dominant dilute; sequence similar to r1/b1
7.02
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Variation: September 1st, 2003
18 days agolc1 red leaf color1: dominant Lc1 confers anthocyanin in coleoptile, nodes, auricle, leaf blade, etc. (compare Sn1 and Hopi1); displaced r1 gene
10.06
GRMZM5G822829
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: October 23rd, 2018
18 days agop1 pericarp color1: dominant P1 regulates red pigment (phlobaphenes) in cob and pericarp (ex. P1-wr red cob; P1-rr red pericarp and cob) and in tassel glumes and husks; tissue-specific allele variations; SSR phi095; myb homologue
1.03
   Zhang, PF et al. 2000. Plant Cell 12:2311-2322     Reference: February 15th, 2021
Gene Product: October 13th, 2010
Variation: September 29th, 2020
18 days agopl1 purple plant1: Pl1 plant tissues have light-independent pigment, pl1 blue light-dependent; Pl1-Bh1, colored patches in c1 aleurone and in plant; transcriptional activator for flavonoid genes; SSR phi031, nc009, nc010. umc1014
6.04
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 16th, 2015
Variation: March 28th, 2013
18 days agopr1 red aleurone1: changes purple aleurone to red; encodes flavonoid 3'-hydroxylase
5.05
GRMZM2G025832
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 20th, 2018
Variation: June 10th, 2011
Gene Model: September 22nd, 2011
18 days agor1 colored1: regulates anthocyanin pathway; dominant R1 (S element) confers function in aleurone; dominants represented by R1-r or r1-r (P element) confer function in anthers, leaf tip, brace roots, etc.
10.06
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: October 13th, 2010
Variation: January 6th, 2018
18 days agosm1 salmon silks1: silks salmon color with P1-rr and P1-wr, brown with P1-ww
6.05 - 6.05
GRMZM2G031311
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
18 days agosn1 scutellar node color1: anthocyanin in coleoptile, nodes, auricle, leaf blade, etc. (compare Lc1 and Hopi1)
10.06
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: December 24th, 2009
18 days agowhp1 white pollen1: duplicate factor with c2 for pollen color and for anthocyanins
2.08
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 1st, 2003
Variation: August 24th, 2013
18 days agoacb1 Acyl-CoA-binding protein1:
10.04
GRMZM2G079908
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Variation: September 29th, 2015
Gene Model: September 29th, 2015
18 days agosm2 salmon silk2: like sm1; silks salmon color with P1-rr and P1-wr, brown with P1-ww
2.07
GRMZM2G180283
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
18 days agohopi1 hopi r1/b1 family member1: (was r1-ch:Hopi) r1/b1 gene family member, 4.5 cM from r1; dominant confers pigmentation on germination in light to aleurone and scutellum, light- or Pl1-dependent in pericarp, and pigment in plant parts. Possibly same as sn1 and/or lc1.
10.05 - 10.06
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 14th, 2016
Variation: September 9th, 2010
18 days agoa4 anthocyaninless4: homolog/duplicate of a1, with differences at 59 positions, including deletions; mRNA expressed in tissues analyzed-cob, husks, kernel; function of gene product not known (Bernhardt et al. 1998)
8.06
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Variation: August 30th, 2013
18 days agochi3 chalcone flavanone isomerase3: Similar to chi1; expressed in various tissues, but not root, embryo, or internode (Sekhon et al 2011)
5.00
GRMZM2G119186
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: January 26th, 2021
Variation: May 13th, 2012
Gene Model: May 9th, 2012
18 days agop2 pericarp color2: nearly identical to p1, active in anther and silk but does not determine pericarp color; SSR's umc2096, umc2097.
1.03
GRMZM2G057027
Zhang, PF et al. 2000. Plant Cell 12:2311-2322     Reference: February 15th, 2021
Variation: September 29th, 2020
Gene Model: August 6th, 2014
18 days agochi1 chalcone flavanone isomerase1: genomic sequence, gene-specific probe, transcript defined by S1-nuclease protection analysis
1.11
GRMZM2G155329
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: January 26th, 2021
Variation: October 10th, 2012
Gene Model: May 9th, 2012
18 days agogst3 glutathione transferase3: cDNA sequence, correspondence to amino terminal of maize GSTIII, low or single copy, transgenic expression in E. coli results in enzyme activity similar to maize GSTIII enzymeconstitutive and major subunit;amino acid sequence, cDNA sequence, transgenic expression, single or low copy gene, SSR phi073.
3.05
GRMZM2G146246
Sun, LL et al. 2018. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2018.05.025     Reference: May 31st, 2018
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: February 15th, 2021
18 days agofht1 flavanone 3-hydroxylase1: (aka f3h) single copy cDNA similar to Antirrhinum homologsimilar to Naringenin,2-oxoglutarate 3-dioxygenase of A. thaliana
2.01 - 2.02
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 8th, 2012
Variation: September 1st, 2003
18 days agofht2 flavanone 3-hydroxylase2:
1.04
GRMZM2G382569
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: June 8th, 2012
Gene Model: June 7th, 2017
18 days agopac1 pale aleurone color1: recessive, non-lethal, regulates reduced pigment in kernels
5.06
GRMZM2G058432
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Variation: February 23rd, 2013
Gene Model: July 11th, 2018
18 days agomybr6 MYB-related-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.09
GRMZM2G087817
Choi, JY et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koab022     Reference: February 15th, 2021
Variation: February 17th, 2004
Gene Model: October 25th, 2017
18 days agosmh1 single myb histone1: expressed in leaf tissue; member of small gene family; SMF protein binds telomere DNA repeats in vitro
8.06
   Choi, JY et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koab022     Reference: February 15th, 2021
Gene Product: February 18th, 2004
Variation: January 15th, 2015
18 days agomrpa3 multidrug resistance-associated protein3: Transport of anthocyanin into vacuole
9.02
   Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: July 11th, 2019
Variation: November 11th, 2009
18 days agorpl5b 60S ribosomal protein L5-1 homolog b:
 
GRMZM2G163081
Choi, JY et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koab022     Reference: February 15th, 2021
Gene Product: December 1st, 2019
Variation: April 9th, 2011
Gene Model: July 28th, 2016
18 days agofnsii1 flavone synthase typeII1: Encodes a flavone synthase that is of the oxygen- and NADPH-dependent cytochrome P450 membrane-bound monooxygenase class
 
GRMZM2G148441
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: August 14th, 2015
Gene Model: August 14th, 2015
18 days agofns1 flavone synthase1:
 
GRMZM2G167336
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 20th, 2017
Gene Model: May 6th, 2016
18 days agomre11a meiotic recombination protein 11 homolog A: transgenic expression has positive role in plant salt tolerance (Luo et al., 2019)
 
GRMZM2G106056
Choi, JY et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koab022     Reference: February 15th, 2021
Variation: May 10th, 2017
Gene Model: January 27th, 2017
18 days agochi4 chalcone flavanone isomerase4: transgenic expression resulted in enhanced anti-insect and antifungal activity
 
GRMZM2G095778
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: January 26th, 2021
Gene Model: January 15th, 2018
18 days agoufgt2 UDP-flavonol-glycosyltransferase2: mutants are sensitive to salt and drought stresses
 
GRMZM2G117878
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: July 4th, 2018
Variation: July 4th, 2018
Gene Model: July 4th, 2018
18 days agocgt1 C-glucosyl transferase1: involved in C-glucosylation of 2-hydroxyflavanone aglycone
 
GRMZM2G162783
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 24th, 2018
Gene Model: September 24th, 2018
18 days agoaat1 anthocyanin acyltransferase1: mutants exhibit reduced anthocyanin acylation
 
GRMZM2G387394
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: September 28th, 2018
Variation: October 1st, 2018
Gene Model: September 28th, 2018
18 days agoacb3 Acyl-CoA-binding protein3:
 
GRMZM2G049495
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb4 Acyl-CoA-binding protein4:
 
GRMZM2G173636
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb5 Acyl-CoA-binding protein5:
 
GRMZM2G108138
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb6 Acyl-CoA-binding protein6:
 
GRMZM2G060781
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb7 Acyl-CoA-binding protein7:
 
GRMZM2G053803
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb8 Acyl-CoA-binding protein8:
 
GRMZM2G351160
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: February 15th, 2021
18 days agoacb9 Acyl-CoA-binding protein9:
5.00
GRMZM2G010861
Zhu, JT et al. 2021. BMC Plant Biology 21:94     Reference: February 15th, 2021
Gene Product: February 15th, 2021
Gene Model: May 2nd, 2020
18 days agochi5 chalcone flavanone isomerase5:
5.04
GRMZM2G311919
Chatham, LA; Juvik, JA. 2021. G3 11:jkaa062     Reference: February 15th, 2021
Gene Product: January 26th, 2021
Gene Model: June 18th, 2018
18 days agoIDP2390  :
2.02
GRMZM2G303147
    Variation: March 31st, 2005
Gene Model: February 15th, 2021
19 days agoBG266188  :
2.09
GRMZM2G144635
    Variation: May 29th, 2006
Gene Model: February 14th, 2021
19 days agoIDP143  :
2.09
GRMZM2G160515
    Variation: March 31st, 2005
Gene Model: February 14th, 2021
19 days agoIDP591  :
2.03
GRMZM2G149323
    Variation: March 31st, 2005
Gene Model: February 14th, 2021
20 days agozmm8 Zea mays MADS8:
9.06
   Du, YF et al. 2021. Proc Natl Acad Sci, USA 118:e2019218118     Reference: February 13th, 2021
Gene Product: April 1st, 2011
Variation: August 27th, 2013
20 days agofas1 fascicled ear1: in Fas1, repeated dichotomous branching in floral meristems
9.06 - 9.07
   Du, YF et al. 2021. Proc Natl Acad Sci, USA 118:e2019218118     Reference: February 13th, 2021
Variation: February 13th, 2021
21 days agoumc1432  : similar to Arabidopsis Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
10.02
GRMZM2G113073
Ma, P et al. 2021. BMC Plant Biology 21:93     Reference: February 12th, 2021
Variation: September 1st, 2003
Gene Model: December 14th, 2017
21 days agotrpp8 trehalose-6-phosphate phosphatase8:
 
GRMZM2G174396
Liu, ST et al. 2021. Frontiers in Plant Genetics and Genomics 12:645443     Reference: February 12th, 2021
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
21 days agoinvan1 invertase alkaline neutral1:
 
GRMZM2G136139
Ma, P et al. 2021. BMC Plant Biology 21:93     Reference: February 12th, 2021
Gene Product: June 12th, 2018
Gene Model: June 12th, 2018
21 days agochao1 chlorophyllide a oxygenase1:
 
GRMZM2G103197
Li, ZX; Tang, J; Srivastava, R; Bassham, DC; Howell, SH. 2020. Plant Cell. 0:doi: 10.1105/tpc.20.00260.     Reference: October 30th, 2020
Gene Product: February 12th, 2021
Gene Model: August 26th, 2020
21 days agolhcb11 light harvesting chlorophyll a/b binding protein11:
 
   Ma, P et al. 2021. BMC Plant Biology 21:93     Reference: February 12th, 2021
Gene Product: January 8th, 2005
21 days agochao2 chlorophyllide a oxygenase2: plays a key role in Chl b biosynthesis, grain yield, and waterlogging tolerance
8.06
GRMZM2G038487
Li, Q et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab059     Reference: February 12th, 2021
Gene Product: February 12th, 2021
Variation: February 12th, 2021
Gene Model: September 2nd, 2019
21 days agoIDP209  :
1.02
GRMZM2G169360
    Variation: March 31st, 2005
Gene Model: February 12th, 2021
22 days agopin12 PIN-formed protein12: similar to Arabidopsis PIN10 (Forestan et al 2012)
9.02
GRMZM2G160496
Schurack, S et al. 2021. Plant J pp.doi: 10.1111/tpj.15195     Reference: February 11th, 2021
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
22 days agopin5 PIN-formed protein5: similar to Arabidopsis PIN5 (Forestan et al 2012)
 
GRMZM2G025742
Schurack, S et al. 2021. Plant J pp.doi: 10.1111/tpj.15195     Reference: February 11th, 2021
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
22 days agotre1 trehalase1:
 
GRMZM2G162690
Nunez-Munoz, L et al. 2021. Plant Signal Behav pp.doi: 10.1080/15592324.2021.1877005     Reference: February 11th, 2021
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
22 days agosaur3 small auxin up RNA3:
 
GRMZM2G466229
Schurack, S et al. 2021. Plant J pp.doi: 10.1111/tpj.15195     Reference: February 11th, 2021
Gene Product: September 1st, 2003
Gene Model: February 11th, 2021
22 days agosaur4 small auxin up RNA4:
 
GRMZM2G414727
Schurack, S et al. 2021. Plant J pp.doi: 10.1111/tpj.15195     Reference: February 11th, 2021
Gene Product: September 1st, 2003
Gene Model: February 11th, 2021
23 days agodof2 DNA binding with one finger2: cDNA sequence, Southern blots indicate small gene family; transcriptional repressor
2.07
   Chen, J et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13077     Reference: February 10th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
23 days agozag6 agamous-like6: Encodes a MADS-box transcription factor homologous to SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 that affects flowering time in Arabidopsis.
 
GRMZM2G026223
Chen, J et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13077     Reference: February 10th, 2021
Variation: June 9th, 2014
Gene Model: June 9th, 2014
29 days agodhn13 dehydrin13:
1.09
GRMZM2G169372
Waqas, MA et al. 2021. Plants 10:293     Reference: February 4th, 2021
Gene Product: August 5th, 2017
Variation: October 13th, 2016
Gene Model: October 14th, 2016
29 days agogl14 glossy14: like gl1; expressed late (gl24 allelic)
2.05 - 2.05
GRMZM5G806387
Waqas, MA et al. 2021. Plants 10:293     Reference: February 4th, 2021
Gene Product: October 31st, 2018
Variation: October 31st, 2018
Gene Model: October 31st, 2018
29 days agoumc1028  :
2.05
GRMZM2G115658
Waqas, MA et al. 2021. Plants 10:293     Reference: February 4th, 2021
Variation: September 1st, 2003
Gene Model: February 15th, 2018
29 days agobzip4 bZIP-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Waqas, MA et al. 2021. Plants 10:293     Reference: February 4th, 2021
Gene Product: August 21st, 2018
Variation: August 21st, 2018
29 days agopdi1 protein disulfide isomerase1: single copy cDNA, SSR umc1550
4.03
GRMZM2G091481
Dang, MQ, et al. 2019. Int J Mol Sci. 21:https://doi.org/10.3390/ijms21010035     Reference: February 4th, 2021
Gene Product: September 1st, 2003
Variation: December 23rd, 2015
Gene Model: October 23rd, 2013
29 days agoara3 ras-related protein ARA-3:
 
GRMZM2G061900
Bu, SH et al. 2021. Frontiers in Plant Genetics and Genomics 11:590012     Reference: February 4th, 2021
Variation: January 17th, 2011
Gene Model: June 1st, 2017
29 days agoerd3 early responsive to dehydration3: tissue-specific expression; induced by abiotic stress treatments
 
GRMZM2G144155
Waqas, MA et al. 2021. Plants 10:293   AT4G19120 (TAIR) Reference: February 4th, 2021
Gene Product: May 29th, 2018
Gene Model: May 29th, 2018
29 days agomtopvib1 meiotic TopoVI B subunit1: mutant plants exhibited normal vegetative growth but male and female sterility
 
GRMZM2G439198
Jing, JL, et al. 2020. Plant Physiol. 0:doi: 10.1104/pp.20.00933     Reference: February 4th, 2021
Gene Product: October 21st, 2020
Variation: October 23rd, 2020
Gene Model: October 21st, 2020
29 days agopco096955  :
8.06
GRMZM2G055936
    Gene Product: February 4th, 2021
Gene Model: September 2nd, 2019
29 days agopco082226  :
9.03
GRMZM2G036921
Dang, MQ, et al. 2019. Int J Mol Sci. 21:https://doi.org/10.3390/ijms21010035     Reference: February 4th, 2021
Gene Product: February 4th, 2021
Gene Model: June 20th, 2020
29 days agoIDP22  :
8.01
GRMZM2G154896
Bu, SH et al. 2021. Frontiers in Plant Genetics and Genomics 11:590012     Reference: February 4th, 2021
Variation: March 31st, 2005
Gene Model: January 16th, 2021
30 days agoht1 Helminthosporium turcicum resistance1: dominant Ht1 plants resistant to Exserohilum turcicum
2.08
   Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Variation: September 1st, 2003
30 days agoht2 Helminthosporium turcicum resistance2: dominant Ht2 plants resistant to Exserohilum turcicum
8.05 - 8.06
   Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Variation: September 1st, 2003
30 days agoht3 Helminthosporium turcicum resistance3: (from Tripsacum floridanum); dominant Ht3 plants resistant to Exserohilum turcicum
 
   Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Variation: September 1st, 2003
30 days agozfp30 putative zinc finger protein30:
4.09
GRMZM2G116079
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: December 6th, 2019
Variation: May 19th, 2015
Gene Model: May 19th, 2015
30 days agoumc1350  :
6.07
GRMZM2G038284
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Variation: September 1st, 2003
Gene Model: August 29th, 2018
30 days agoumc1431  : NCBI: similar to Arabidopsis plantacyanin
1.09
GRMZM2G004012
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Variation: November 4th, 2016
Gene Model: November 4th, 2016
30 days agopropep1 precursor elicitor peptide1:
 
GRMZM5G899080
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: October 16th, 2020
Variation: March 4th, 2011
Gene Model: May 17th, 2013
30 days agohtn1 Helminthosporium turcicum resistanceN1: formerly HtN; dominant Htn1 plants resistant to Exserohilum turcicum
8.06
GRMZM2G164640
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183   At1g66980 (TAIR)
LOC_Os01g49580 (MSU/TIGR)
Reference: February 3rd, 2021
Gene Product: July 10th, 2019
Variation: July 14th, 2015
Gene Model: February 3rd, 2021
30 days agopao1 polyamine oxidase1: cDNA and genomic clones, low copy numberplays an important role in tumor development during the maize-U. maydis interaction
10.03
GRMZM2G034152
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: June 10th, 2020
Variation: October 7th, 2015
Gene Model: October 7th, 2015
30 days agonip1a NOD26-like membrane intrinsic protein1: leaf cDNA csu177 similar to rice nodulin
5.04
GRMZM2G041980
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: September 1st, 2003
Variation: June 2nd, 2015
Gene Model: June 2nd, 2015
30 days agogst41 glutathione transferase41:
6.05
GRMZM2G097989
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2010
Gene Model: July 27th, 2016
30 days agohis2a1 histone2A1: cDNA from unfertilized ovule, similar to histone2A
9.06
   Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: September 1st, 2003
Variation: September 3rd, 2015
30 days agoemp16 empty pericarp16: mutant homozyous kernels have empty pericarp and are non-viable.
 
GRMZM2G060516
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: December 27th, 2016
Variation: January 16th, 2016
Gene Model: January 16th, 2016
30 days agotraf8 TNF receptor-associated factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.,
 
GRMZM2G026556
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: May 23rd, 2019
Gene Model: May 20th, 2019
30 days agocer1 eceriferum1:
 
GRMZM2G075255
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: February 13th, 2020
Gene Model: February 13th, 2020
30 days agomips2 myo-inositol phosphate synthase2:
 
GRMZM2G004528
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: July 13th, 2019
Gene Model: May 8th, 2020
30 days agorlk6 receptor-like protein kinase6:
 
GRMZM2G451147
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: July 10th, 2019
Gene Model: February 3rd, 2021
30 days agorlk8 receptor-like protein kinase8:
 
GRMZM2G144028
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: July 10th, 2019
Gene Model: February 3rd, 2021
30 days agocyt1 cytidyltransferase1:
 
GRMZM2G092018
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: February 3rd, 2021
Gene Model: February 3rd, 2021
30 days agoret1 reticulon-like1:
 
GRMZM2G091973
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: February 6th, 2020
Gene Model: February 3rd, 2021
30 days agorlk9 receptor-like protein kinase9:
 
GRMZM2G456487
Yang, P et al. 2021. Plant J pp.doi: 10.1111/tpj.15183     Reference: February 3rd, 2021
Gene Product: July 10th, 2019
Gene Model: February 3rd, 2021
30 days agoplt3 phospholipid transfer protein homolog3:
3.06
GRMZM2G126397
Xu, XS et al. 2021. Dev Cell 56:1-12     Reference: February 3rd, 2021
Gene Product: September 1st, 2003
Variation: January 8th, 2017
Gene Model: January 6th, 2017
32 days agoprp5 pathogenesis related protein5:
1.06
GRMZM2G402631
Karre, S et al. 2021. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-04-20-0091-R     Reference: February 1st, 2021
Gene Product: July 25th, 2018
Variation: August 20th, 2011
Gene Model: October 30th, 2015
32 days agoprp1 pathogenesis-related protein1: cDNA clone, single copy, deduced protein product is basic (vs. acidic), normally accumulates during germination,induced by fungal elicitors but not wounding
8.03
   Karre, S et al. 2021. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-04-20-0091-R     Reference: February 1st, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
32 days agomlks2 Maize LINC KASH AtSINE-like2: required for normal male meiosis and pollen development and normal stomatal complex development
 
GRMZM2G000608
Gumber, HK, et al. 2019. Nucleus. 10:144-166     Reference: August 5th, 2020
Gene Product: February 1st, 2021
Variation: June 22nd, 2019
Gene Model: June 7th, 2018
32 days agoasn1 asparagine synthetase1: cDNA sequence 70% identical to asparagine synthetase from Pisum sativum
1.03
GRMZM2G074589
Raffan, S; Halford, NG. 2021. Ann Appl Biol 178:6-22     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Variation: May 9th, 2009
Gene Model: December 30th, 2015
32 days agoasn2 asparagine synthetase2:
3.09
GRMZM2G093175
Raffan, S; Halford, NG. 2021. Ann Appl Biol 178:6-22     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Variation: December 30th, 2015
Gene Model: December 30th, 2015
32 days agoasn3 asparagine synthetase3:
1.03
GRMZM2G053669
Raffan, S; Halford, NG. 2021. Ann Appl Biol 178:6-22     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Variation: May 9th, 2009
Gene Model: October 16th, 2015
32 days agoasn4 asparagine synthetase4:
9.06
GRMZM2G078472
Raffan, S; Halford, NG. 2021. Ann Appl Biol 178:6-22     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Variation: January 20th, 2016
Gene Model: December 30th, 2015
32 days agoarm4 armadillo domain protein4: Mutant kernels are smaller and less plump; encodes an armadillo domain protein
4.10
GRMZM2G019284
Kong, MS et al. 2019. Plant Breed pp.doi: 10.1111/pbr.12786   At1G32260 (TAIR) Reference: December 7th, 2019
Gene Product: February 1st, 2021
Variation: December 7th, 2019
Gene Model: December 7th, 2019
32 days agogeb2 glucan endo-1,3-beta-glucosidase homolog2:
 
GRMZM2G125032
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: September 1st, 2003
Gene Model: February 16th, 2018
32 days agolic1 lichenase1: close paralog of lic2
 
GRMZM2G041961
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: January 7th, 2020
32 days agolic2 lichenase2: mutant has increased mixed-linkage (1,3;1,4)-β-D-glucan (MLG) content in several tissues
 
GRMZM2G137535
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Variation: February 1st, 2021
Gene Model: January 7th, 2020
32 days agoaro1 armadillo repeat only1:
 
GRMZM2G043353
Gebert, M et al. 2008. Plant Cell 20:2798-2814   AT5G66200 (TAIR) Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agoaro2 armadillo repeat only2:
 
GRMZM2G133282
Gebert, M et al. 2008. Plant Cell 20:2798-2814   AT4G34940 (TAIR) Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agoaro3 armadillo repeat only3:
 
GRMZM2G163242
Gebert, M et al. 2008. Plant Cell 20:2798-2814   AT4G34940 (TAIR) Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agoaro4 armadillo repeat only4:
 
GRMZM2G163751
Gebert, M et al. 2008. Plant Cell 20:2798-2814   AT4G34940 (TAIR) Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agohin1 hairpin-induced1: cell death marker gene
 
GRMZM2G106792
Karre, S et al. 2021. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-04-20-0091-R     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agoefcb1 EF-hand Ca2+-binding protein1: cell death marker gene
 
AC225718.2_FG006
Karre, S et al. 2021. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-04-20-0091-R     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agolic3 lichenase3: close paralog of lic2
 
GRMZM2G014723
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agogeb3 glucan endo-1,3-beta-glucosidase homolog3: GH17 member
 
GRMZM2G061403
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: September 1st, 2003
Gene Model: February 1st, 2021
32 days agolic4 lichenase4: paralog of lic2
 
GRMZM2G019185
Kraemer, FJ et al. 2021. Plant Physiol pp.doi: 10.1093/plphys/kiab009     Reference: February 1st, 2021
Gene Product: February 1st, 2021
Gene Model: February 1st, 2021
32 days agoomt1 Caffeoyl-CoA O-methyltransferase1:
6.02
GRMZM2G127948
Karre, S et al. 2021. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-04-20-0091-R     Reference: February 1st, 2021
Gene Product: January 5th, 2014
Variation: December 26th, 2016
Gene Model: September 17th, 2014
33 days agopyl8 pyrabactin resistance-like protein8: plays role in plant drought resistance (He et al., 2018)
8.04
GRMZM2G165567
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: April 21st, 2018
33 days agoprh7 protein phosphatase homolog7:
 
GRMZM2G082487
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
33 days agopyl3 pyrabactin resistance-like protein3: plays role in plant drought resistance (He et al., 2018)
 
GRMZM2G154987
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: April 21st, 2018
33 days agopyl9 pyrabactin resistance-like protein9: plays role in plant drought resistance (He et al., 2018)
 
GRMZM2G133631
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: April 21st, 2018
33 days agopyl10 pyrabactin resistance-like protein10: plays role in plant drought resistance (He et al., 2018)
 
GRMZM2G063882
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: April 21st, 2018
33 days agopyl12 pyrabactin resistance-like protein12: plays role in plant drought resistance (He et al., 2018)
 
GRMZM2G405064
He, ZH et al. 2018. Frontiers Plant Sci 9:422     Reference: April 21st, 2018
Gene Product: January 31st, 2021
Gene Model: April 21st, 2018
33 days agoGRMZM2G074824  :
 
GRMZM2G469012
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G063841  :
 
GRMZM2G063841
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G398615  :
 
GRMZM2G398615
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G372297  :
 
GRMZM2G372297
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G457624  :
 
GRMZM2G457624
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G406715  :
 
GRMZM2G406715
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G544441  :
 
GRMZM2G544441
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G313754  :
 
GRMZM2G313754
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G045452  :
 
GRMZM2G045452
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G051866  :
 
GRMZM2G051866
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agoGRMZM2G165788  :
 
GRMZM2G165788
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agopyl1 pyrabactin resistance-like protein1:
 
AC194914.3_FG002
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agopyl7 pyrabactin resistance-like protein7:
 
GRMZM2G144224
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agopyl13 pyrabactin resistance-like protein13:
 
GRMZM2G048733
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
33 days agopyl14 pyrabactin resistance-like protein14:
 
GRMZM2G134731
Wang, YG et al. 2014. Gene 549:179-185     Reference: January 31st, 2021
Gene Product: January 31st, 2021
Gene Model: January 31st, 2021
37 days agohb67 Homeobox-transcription factor 67: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.01
   Wang, CC et al. 2021. Physiol Plant pp.doi: 10.1111/ppl.13347     Reference: January 27th, 2021
Gene Product: August 25th, 2017
37 days agoereb53 AP2-EREBP-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Wang, CC et al. 2021. Physiol Plant pp.doi: 10.1111/ppl.13347   LOC_Os1g67410 (MSU/TIGR) Reference: January 27th, 2021
Gene Product: July 5th, 2019
37 days agohb122 Homeobox-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Wang, CC et al. 2021. Physiol Plant pp.doi: 10.1111/ppl.13347     Reference: January 27th, 2021
Gene Product: August 25th, 2017
38 days agofls1 flavonol synthase1: partially complements the flavonol deficiency of the Arabidopsis fls1 mutant
 
GRMZM2G152801
Li, BZ et al. 2021. Plant Soil pp.doi: 10.1007/s11104-020-04814-8     Reference: January 26th, 2021
Gene Product: October 10th, 2012
Variation: October 9th, 2012
Gene Model: October 9th, 2012
38 days agochls5 chalcone synthase5:
 
GRMZM2G435393
Li, BZ et al. 2021. Plant Soil pp.doi: 10.1007/s11104-020-04814-8     Reference: January 26th, 2021
Gene Product: September 1st, 2003
Gene Model: December 20th, 2020
38 days agochls10 chalcone synthase10:
 
GRMZM2G114471
Li, BZ et al. 2021. Plant Soil pp.doi: 10.1007/s11104-020-04814-8     Reference: January 26th, 2021
Gene Product: September 1st, 2003
Gene Model: December 20th, 2020
38 days agochi6 chalcone flavanone isomerase6:
3.09
GRMZM2G175076
Li, BZ et al. 2021. Plant Soil pp.doi: 10.1007/s11104-020-04814-8     Reference: January 26th, 2021
Gene Product: January 26th, 2021
Variation: March 31st, 2005
Gene Model: February 25th, 2019
39 days agoRS2Z35  :
6.01
   Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
39 days agoRS2Z37B  :
6.01
GRMZM2G099317
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: December 17th, 2019
39 days agomch2 maize CRY1 homolog2: Homolog to yeast 40S ribosomal protein S14 gene family (cDNA probe)
 
GRMZM2G069762
Blanc, J et al. 2021. G3 pp.doi: 10.1093/g3journal/jkab004     Reference: January 25th, 2021
Gene Product: September 1st, 2003
Variation: October 14th, 2010
Gene Model: July 28th, 2016
39 days agoarf1 ADP-ribosylation factor homolog1: cDNA similar to ARF family of GTP binding proteins
5.00
GRMZM2G395844
Verwoert, IIGS; Brown, A; Slabas, AR; Stuitje, AR. 1995. Plant Mol Biol 27:629-633     Reference: September 1st, 2003
Gene Product: January 25th, 2021
Variation: September 1st, 2003
Gene Model: June 14th, 2018
39 days agosmt2 sterol methyl transferase2: cDNA sequences, SSR umc1547
1.01
GRMZM2G075701
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Gene Product: September 1st, 2003
Variation: February 4th, 2015
Gene Model: February 4th, 2015
39 days agoumc1612  :
4.08
GRMZM2G012391
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Variation: September 1st, 2003
Gene Model: April 24th, 2020
39 days agosqs1 squalene synthase1:
1.11
GRMZM2G108225
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Gene Product: September 1st, 2003
Variation: January 27th, 2011
Gene Model: December 19th, 2014
39 days agocyp1 cytochrome P450 homolog1: leaf cDNA csu25, similar to P450 lanosterol 14-alpha-demethylase
3.10
   Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Gene Product: September 1st, 2003
Variation: February 28th, 2015
39 days agocas1 cycloartenol synthase1: leaf cDNA csu265
4.10
GRMZM2G065494
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
39 days agoSC32  :
1.06
   Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Variation: September 25th, 2007
39 days agomsr6 methionine sulfoxide reductase6:
1.04
GRMZM2G577677
Zhu, JT et al. 2015. Gene 562:159-168     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: February 7th, 2020
39 days agosqsh1 squalene synthase homolog1: Designation as sqsh1 based on high homology to sqs1 sequence; existence of several cDNAs indicates a functional gene (EHC Jan 2011)
 
GRMZM2G029396
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Variation: January 27th, 2011
Gene Model: June 1st, 2017
39 days agobrc1 brassinosteroid catabolism1: member of BR catabolic gene family
 
GRMZM2G107322
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: January 25th, 2021
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
39 days agobrc2 brassinosteroid catabolism2: member of BR catabolic gene family
 
GRMZM5G852663
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: January 25th, 2021
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
39 days agoburp2 BURP domain-containing protein-RD22-like2: Water deficit caused a 1.6-fold increase in the expression; expression up-regulated by ABA.
 
GRMZM5G800586
Blanc, J et al. 2021. G3 pp.doi: 10.1093/g3journal/jkab004     Reference: January 25th, 2021
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
39 days agodrg10 dark response gene10: kernel length, kernel width and kernel area of mutants were significantly reduced
 
GRMZM2G107199
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Variation: January 25th, 2021
Gene Model: June 6th, 2020
39 days agomsr1 methionine sulfoxide reductase1:
 
GRMZM2G022413
Zhu, JT et al. 2015. Gene 562:159-168     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agomsr3 methionine sulfoxide reductase3:
 
GRMZM2G376918
Zhu, JT et al. 2015. Gene 562:159-168     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agomsr4 methionine sulfoxide reductase4:
 
GRMZM2G025322
Zhu, JT et al. 2015. Gene 562:159-168     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoarf2 ADP-ribosylation factor homolog2:
 
GRMZM2G079226
Liu, YY et al. 2009. Mol Biol Rep 37:755-761     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoRSZ20  :
 
GRMZM2G080930
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoRS2Z37A  :
 
GRMZM2G175419
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSC30  :
 
GRMZM2G016296
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSC26  :
 
GRMZM2G104353
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSCL28  :
 
   Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
39 days agoSCL25A  :
 
GRMZM2G426229
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSR45_1  :
 
GRMZM2G060540
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSR45_2  :
 
GRMZM2G133926
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSR30  :
 
GRMZM2G390729
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoRSZ28  :
5.05
GRMZM2G027105
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: May 20th, 2020
39 days agoSCL25B  :
7.04
GRMZM5G867185
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agomsr5 methionine sulfoxide reductase5:
8.03
GRMZM2G089308
Zhu, JT et al. 2015. Gene 562:159-168   AT4G21860 (TAIR)
LOC_Os05g33510 (MSU/TIGR)
Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: March 24th, 2016
39 days agoRSZ21  :
9.02
GRMZM2G151923
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoIDP94  :
3.04
GRMZM2G083111
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031     Reference: January 25th, 2021
Variation: March 31st, 2005
Gene Model: February 23rd, 2019
39 days agonatl1 nana2-like1: ortholog of Arabidopsis brassinosteriod biosynthesis gene DWF1; paralog of na2
 
GRMZM2G455658
Sun, H et al. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.031   AT3G19820 (TAIR) Reference: January 25th, 2021
Gene Product: June 13th, 2016
Gene Model: June 13th, 2016
39 days agoRS2Z39  :
8.05
GRMZM2G474658
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: January 25th, 2021
39 days agoSCL30  :
1.05
GRMZM2G065066
Rauch, HB et al. 2013. Mol Biol Evol 31:605-613     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: February 9th, 2020
39 days agomsr2 methionine sulfoxide reductase2:
1.05
GRMZM2G052666
Zhu, JT et al. 2015. Gene 562:159-168     Reference: January 25th, 2021
Gene Product: January 25th, 2021
Gene Model: February 8th, 2020
39 days agopco139502b  :
3.08
GRMZM2G152686
Blanc, J et al. 2021. G3 pp.doi: 10.1093/g3journal/jkab004     Reference: January 25th, 2021
Gene Product: April 8th, 2011
Variation: April 17th, 2008
Gene Model: February 25th, 2019
40 days agosina1 seven in absentia1: similar to Arabidopsis E3 ubiquitin-protein ligase SINAT3
3.00
GRMZM2G309063
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Variation: March 28th, 2018
Gene Model: March 24th, 2020
40 days agosina4 seven in absentia4:
1.04
GRMZM2G061624
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Gene Model: February 7th, 2020
40 days agosina2 seven in absentia2:
 
GRMZM2G146354
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Gene Model: January 24th, 2021
40 days agosina6 seven in absentia6:
 
GRMZM2G009265
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Gene Model: January 24th, 2021
40 days agosina3 seven in absentia3:
5.04
GRMZM2G081075
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Gene Model: January 24th, 2021
40 days agosina5 seven in absentia5:
8.04
GRMZM2G101852
Wang, M et al. 2008. DNA Seq 19:206-216     Reference: January 24th, 2021
Gene Product: January 24th, 2021
Gene Model: August 30th, 2019
41 days agosca1 short chain alcohol dehydrogenase1: single copy leaf cDNA, csu149, similar to ts2
5.00
GRMZM2G332976
Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023     Reference: January 23rd, 2021
Gene Product: September 1st, 2003
Variation: July 27th, 2013
Gene Model: June 23rd, 2015
41 days agonactf108 NAC-transcription factor 108: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.functions as a negative regulator of the stay‐green trait
 
   Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023     Reference: January 23rd, 2021
Gene Product: July 8th, 2019
Variation: May 4th, 2019
41 days agonactf127 NAC-transcription factor 127: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023     Reference: January 23rd, 2021
Gene Product: September 1st, 2003
41 days agovp10 viviparous10: yellow endosperm, colored aleurone, green seedlings, adherent
10.07
   Sallam, N; Moussa, ME. 2021. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2021.01.024     Reference: January 23rd, 2021
Gene Product: February 22nd, 2007
Variation: June 23rd, 2012
41 days agonactf48 NAC-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G054252
Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023     Reference: January 23rd, 2021
Variation: January 27th, 2017
Gene Model: January 27th, 2017
41 days agonced3 nine-cis-epoxycarotenoid dioxygenase3:
 
GRMZM5G858784
Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023     Reference: January 23rd, 2021
Gene Product: September 20th, 2012
Gene Model: September 20th, 2012
41 days agomocos1 molybdenum cofactor sulfurase1: ortholog of Arabidopsis ABA3 (LOS5)
 
GRMZM2G048092
Mao, Y et al. 2021. J Exp Bot pp.doi: 10.1093/jxb/erab023   AT1G16540 (TAIR) Reference: January 23rd, 2021
Gene Product: January 23rd, 2021
Gene Model: January 23rd, 2021
41 days agozb9 zebra crossbands9:
 
GRMZM2G038598
Yuan, G et al. 2021. Mol Breed 41:9     Reference: January 23rd, 2021
Gene Product: January 23rd, 2021
Variation: January 23rd, 2021
Gene Model: January 23rd, 2021
41 days agomocos2 molybdenum cofactor sulfurase2:
 
GRMZM2G081571
Gao, XH et al. 2014. Hereditas 36:584-591   AT1G30910 (TAIR) Reference: January 23rd, 2021
Gene Product: January 23rd, 2021
Gene Model: January 23rd, 2021
42 days agorrb3 retinoblastoma family3:
 
GRMZM2G033828
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Variation: January 22nd, 2021
Gene Model: April 17th, 2015
42 days agonip2a NOD26-like membrane intrinsic protein2:
5.07
GRMZM2G028325
Park, J-W et al. 2015. PLoS One 10:e0125810     Reference: January 22nd, 2021
Gene Product: September 1st, 2003
Variation: May 28th, 2013
Gene Model: June 3rd, 2015
42 days agonip2b NOD26-like membrane intrinsic protein2:
6.04
GRMZM2G137108
Park, J-W et al. 2015. PLoS One 10:e0125810     Reference: January 22nd, 2021
Gene Product: September 1st, 2003
Variation: July 3rd, 2015
Gene Model: June 3rd, 2015
42 days agoadc2 arginine decarboxylase2:
4.06
   Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: August 18th, 2020
Variation: January 22nd, 2021
42 days agopco079297  :
2.03
GRMZM2G062554
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Variation: January 22nd, 2021
Gene Model: March 11th, 2020
42 days agohsp8 heat shock protein8:
 
GRMZM2G080724
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: January 15th, 2019
Variation: January 22nd, 2021
Gene Model: January 14th, 2019
42 days agouce18 ubiquitin-conjugating enzyme18: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
 
GRMZM2G038851
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: December 19th, 2019
Variation: January 22nd, 2021
Gene Model: December 19th, 2019
42 days agogrx3 glutaredoxin3:
 
GRMZM2G148387
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: January 21st, 2021
Variation: January 22nd, 2021
Gene Model: January 21st, 2021
42 days agomorc1 microrchidia homolog1:
 
AC194405.3_FG021
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Variation: January 22nd, 2021
Gene Model: January 21st, 2021
42 days agocmu4 chorismate mutase4:
 
GRMZM2G124365
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: February 12th, 2014
Variation: January 22nd, 2021
Gene Model: January 21st, 2021
42 days agolsi2 low silicon2:
 
GRMZM2G158378
Mitani, N et al. 2009. Plant Cell 21:2133-2142     Reference: January 22nd, 2021
Gene Product: January 22nd, 2021
Gene Model: January 22nd, 2021
42 days agoptp1 protein tyrosine phosphatase1:
1.02
GRMZM2G052546
Li, BB et al. 2012. Plant Physiol 159:671-681     Reference: January 22nd, 2021
Gene Product: January 22nd, 2021
Gene Model: January 22nd, 2021
42 days agosps2 sucrose phosphate synthase2: leaf cDNA csu328, sequence similar to sps1
3.05
GRMZM2G140107
Warman, C et al. 2021. Plant J pp.doi: 10.1111/tpj.15166     Reference: January 21st, 2021
Gene Product: September 1st, 2003
Variation: January 22nd, 2021
Gene Model: March 18th, 2015
43 days agoms22 male sterile22: pollen mother cells degenerate
7.02
GRMZM2G442791
Ferris, AC; Walbot, V. 2021. J. Fungi 7:8     Reference: December 28th, 2020
Gene Product: January 21st, 2021
Variation: February 12th, 2013
Gene Model: August 11th, 2012
43 days agogrx1 glutaredoxin homolog1: leaf cDNA csu40, similar to E. coli glutaredoxin
2.04 - 2.04
GRMZM2G150295
Wang, Y-F et al. 2020. Genomics Proteomics Bioinformatics doi: 10.1016/j.gpb.2018.05.005     Reference: March 18th, 2020
Gene Product: January 21st, 2021
Variation: August 16th, 2012
Gene Model: August 16th, 2012
43 days agogrx2 glutaredoxin 2:
6.05
GRMZM2G318213
    Gene Product: January 21st, 2021
Variation: March 31st, 2005
Gene Model: January 9th, 2020
44 days agoppr215 pentatricopeptide repeat protein215:
 
GRMZM2G327263
Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: December 27th, 2016
Gene Model: January 20th, 2021
44 days agocoi1 coronatine insensitive1: jasmonate signal receptor gene family member
3.06
GRMZM2G125411
Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
Gene Model: November 2nd, 2018
44 days agocoi2 coronatine insensitive2: jasmonate signal receptor gene family member
 
GRMZM2G151536
Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
Gene Model: November 2nd, 2018
44 days agocoi3 coronatine insensitive3: jasmonate signal receptor gene family member
 
GRMZM2G353209
Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
Gene Model: November 2nd, 2018
44 days agocoi4 coronatine insensitive4: does not transgenically restore male fertility and defense response in Arabidopsis mutant coi1-1
 
GRMZM2G079112
Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
Gene Model: November 2nd, 2018
44 days agocoi5 coronatine insensitive5:
 
GRMZM2G035314
Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
Gene Model: January 20th, 2021
44 days agocoi6 coronatine insensitive6:
 
   Ma, L et al. 2021. Int J Mol Sci 22:E870     Reference: January 20th, 2021
Gene Product: November 2nd, 2018
45 days agopebp10 phosphatidylethanolamine-binding protein10:
 
   Hufford, MB et al. 2021. bioRxiv preprint pp.doi: 10.1101/2021.01.14.426684     Reference: January 19th, 2021
Variation: December 8th, 2010
45 days agogl15 glossy15: glossy leaf surface expressed after 3rd leaf (aka gl4)
9.03
   Hufford, MB et al. 2021. bioRxiv preprint pp.doi: 10.1101/2021.01.14.426684     Reference: January 19th, 2021
Variation: October 5th, 2012
45 days agohsftf1 HSF-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf12 HSF-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf13 HSF-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf18 HSF-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf20 HSF-transcription factor 20: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf21 HSF-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf24 HSF-transcription factor 24: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf28 HSF-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf6 HSF-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agohsftf7 HSF-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.similar to heat stress transcription factor B-2b of A. thaliana
 
   Li, ZX; Howell, SH. 2021. Int J Mol Sci 22:948     Reference: January 19th, 2021
Gene Product: May 15th, 2020
45 days agodof21 C2C2-Dof-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.02
GRMZM2G162749
Hufford, MB et al. 2021. bioRxiv preprint pp.doi: 10.1101/2021.01.14.426684     Reference: January 19th, 2021
Variation: January 6th, 2017
Gene Model: January 6th, 2017
45 days agoigps2 indole-3-glycerolphosphate synthase2:
 
GRMZM2G169516
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: March 29th, 2018
Gene Model: January 19th, 2021
46 days agovdac1a voltage-dependent anion channel protein1a:
2.06
GRMZM2G150616
Jiao, ZY et al. 2021. New Phytol pp.doi: 10.1111/nph.17206     Reference: January 18th, 2021
Gene Product: January 24th, 2014
Variation: July 14th, 2009
Gene Model: July 29th, 2015
46 days agobx1 benzoxazinless1: plastid localized, committed step in cyclic hydroxamates/DIMBOA synthesis; insect resistance in young seedlings; SSR umc1022
4.00
GRMZM2G085381
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: October 14th, 2011
Variation: April 12th, 2019
Gene Model: October 14th, 2011
46 days agocat2 catalase2: electrophoretic mobility; null allele is known; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
1.01
   Jiao, ZY et al. 2021. New Phytol pp.doi: 10.1111/nph.17206     Reference: January 18th, 2021
Gene Product: September 1st, 2003
Variation: September 21st, 2012
46 days agocat3 catalase3: electrophoretic mobility, null allele is known; mitochondrial; tetrameric, intralocus hybrid bands occur; SSRs phi006, phi019, phi076, umc1197
4.11
   Jiao, ZY et al. 2021. New Phytol pp.doi: 10.1111/nph.17206     Reference: January 18th, 2021
Gene Product: September 1st, 2003
Variation: March 2nd, 2007
46 days agots1 tassel seed1: tassel pistillate and pendant; if removed, small ear with irregular kernel placement develops
2.04 - 2.05
   Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: January 3rd, 2018
Variation: September 5th, 2019
46 days agochn1 chitinase chem1: cDNA derived from a library originating from a mercuric chloride treated line, INRA258; pathogenesis-related protein (Nasser 1988) induced by fungal infection and other stresses
3.08
GRMZM2G453805
Jiao, ZY et al. 2021. New Phytol pp.doi: 10.1111/nph.17206     Reference: January 18th, 2021
Gene Product: September 1st, 2003
Variation: November 30th, 2007
Gene Model: June 21st, 2015
46 days agorpd3 RPD3 histone deacetylase homolog: cDNA complements yeast rpd3, multiple copy, SSR umc1173.
4.09
GRMZM2G172883
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: February 12th, 2020
Variation: November 11th, 2014
Gene Model: November 6th, 2014
46 days agobak5 brassinosteroid insensitive1-associated receptor kinase like5:
3.04
GRMZM2G034855
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: January 18th, 2021
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
46 days agopal3 phenylalanine ammonia lyase3: used primers on cDNA from glume bars to PCR out RFLP probe. 190 bp ss-mRNA with homology to phenylalanine ammonia lyase. Mapped minor band to this site.
4.05
GRMZM2G160541
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: September 1st, 2003
Variation: September 25th, 2014
Gene Model: September 19th, 2014
46 days agobx2 benzoxazinone synthesis2: endoplasmic reticulum P450 monoxygenase; synthesis cyclic hyroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1164, umc1682
4.01
GRMZM2G085661
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: April 8th, 2013
Variation: April 12th, 2019
Gene Model: October 24th, 2011
46 days agotsa1 tryptophan synthase alpha subunit1: With products of orp1 and orp2 genes, forms tryptophan synthase. Plastidic.
 
GRMZM5G841619
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: October 21st, 2011
Gene Model: October 14th, 2011
46 days agobak1 brassinosteroid insensitive1-associated receptor kinase like1:
 
GRMZM2G145720
Leiboff, S et al. 2015. Nature Communications 6: 8974     Reference: March 30th, 2016
Gene Product: January 18th, 2021
Gene Model: November 21st, 2015
46 days agopal4 phenylalanine ammonia lyase4:
 
GRMZM2G063917
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: September 6th, 2019
Gene Model: May 6th, 2016
46 days agoprp10 pathogenesis-related protein1:
 
GRMZM2G145518
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: July 25th, 2018
Gene Model: September 16th, 2017
46 days agotps21 terpene synthase21: has a role in fungal tolerance; involved in the producation of beta-selinene and beta-costic acid
 
GRMZM2G011151
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: May 28th, 2012
Gene Model: September 22nd, 2017
46 days agoprp6 pathogenesis-related protein6: encoded protein exerted broad spectrum antifungal activity
 
GRMZM2G112488
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: July 25th, 2018
Gene Model: September 30th, 2017
46 days agoigps1 indole-3-glycerolphosphate synthase1:
 
GRMZM2G106950
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: March 29th, 2018
Variation: January 18th, 2021
Gene Model: March 29th, 2018
46 days agoigps3 indole-3-glycerolphosphate synthase3:
 
GRMZM2G145870
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: March 29th, 2018
Variation: January 18th, 2021
Gene Model: March 29th, 2018
46 days agobak2 brassinosteroid insensitive1-associated receptor kinase like2:
 
GRMZM2G132763
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: January 18th, 2021
Gene Model: April 5th, 2019
46 days agobak3 brassinosteroid insensitive1-associated receptor kinase like3:
 
GRMZM2G043350
Anderson, AA, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.18.00840   AT4G18710 (TAIR) Reference: August 1st, 2019
Gene Product: January 18th, 2021
Gene Model: June 21st, 2019
46 days agobak4 brassinosteroid insensitive1-associated receptor kinase 4:
 
GRMZM2G121565
    Gene Product: January 18th, 2021
Gene Model: January 5th, 2020
46 days agowrky126 WRKY-transcription factor 126: candidate gene for stem architecture
 
GRMZM5G851490
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: July 24th, 2017
Gene Model: September 9th, 2020
46 days agopepr1 plant elicitor peptide receptor1:
 
GRMZM2G011806
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: July 10th, 2019
Gene Model: October 15th, 2020
46 days agonpr1 nonexpressor of pathogenesis-related genes homolog 1: an activator of salicylic acid (SA)-signalling; knockouts inhibit the induction of pathogenesis-related (PR) genes
 
GRMZM2G076450
Jiao, ZY et al. 2021. New Phytol pp.doi: 10.1111/nph.17206     Reference: January 18th, 2021
Gene Product: January 18th, 2021
Gene Model: January 18th, 2021
46 days agopx19 peroxidase19:
 
GRMZM2G107228
Ziemanne, S et al. 2018. Nature Plants 4:172-180     Reference: January 18th, 2021
Gene Product: September 18th, 2015
Gene Model: January 18th, 2021
46 days agoigl1 indole-3-glycerol phosphate lyase1: mRNA production induced by volicitin, forms free indole
1.11
GRMZM2G046191
Richter, A et al. 2021. Plant J pp.doi: 10.1111/tpj.15163     Reference: January 18th, 2021
Gene Product: October 14th, 2011
Variation: July 18th, 2014
Gene Model: July 11th, 2014
48 days agobap2 basal layer antifungal protein2: cDNA, multiple copies; antifungal activity; basal endosperm cell specific
4.05
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
48 days agobetl3 basal endosperm transfer layer3: cDNA sequence, specific to basal endosperm transfer layer
3.05
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: October 21st, 2013
48 days agopebp11 phosphatidylethanolamine-binding protein11:
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: December 10th, 2010
48 days agodek1 defective kernel1: germless; colorless (mosaic) aleurone; floury white endosperm; anthocyanins and carotenoids absent; cultured embryos not obtained (aka clf1, gay1)
1.03
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: October 31st, 2020
48 days agodek15 defective kernel15: collapsed floury endosperm; lethal; cultured embryos green
10.04 - 10.07
GRMZM2G079796
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: February 1st, 2019
Variation: February 1st, 2019
Gene Model: February 1st, 2019
48 days agotcrr1 transfer cell response regulator1: basal endosperm transfer cell specific transcript; encoded protein is found other cells, the conducting cells above the transfer layer, and immature cells adjacent to the transfer layer
4.05
GRMZM2G016145
Muniz, LM et al. 2010. BMC Plant Biology 10:84     Reference: January 16th, 2021
Gene Product: January 16th, 2021
Variation: December 31st, 2015
Gene Model: December 31st, 2015
48 days agoesr6 embryo surrounding region6: transcript specific to embryo surrounding region near basal endosperm transfer layer
4.09
GRMZM2G048353
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 25th, 2018
Variation: January 5th, 2016
Gene Model: January 5th, 2016
48 days agoo11 opaque endosperm11: thin, opaque, somewhat shrunken kernels with greyish cast
 
GRMZM2G147685
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069   AT1G49770 (TAIR) Reference: January 16th, 2021
Gene Product: September 14th, 2016
Variation: February 8th, 2018
Gene Model: February 8th, 2018
48 days agoo2 opaque endosperm2: like o1; high lysine content; regulates b-32 protein (see rip1); reduced lysine degradation (lysine-ketoglutaric reductase); SSRs phi057, 112
7.01
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: June 6th, 2016
48 days agovp1 viviparous1: embryo fails to become dormant, viable if transplanted; some alleles dormant; chlorophyll and carotenoids unaffected; anthocyanins in aleurone suppressed (aka vp4); cDNA
3.05
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 29th, 2015
Variation: August 22nd, 2013
48 days agopbf1 prolamin-box binding factor1: endosperm cDNA, SSR umc1065
2.06
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: April 20th, 2005
48 days agomrp1 Myb related protein1: transforms aleurone cells into endosperm transfer cells and required to maintain transfer cell phenotype
8.05
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
48 days agoesr1 embryo surrounding region1: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G046086
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: June 12th, 2012
Gene Model: January 5th, 2016
48 days agoesr2 embryo surrounding region2: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G315601
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: June 12th, 2012
Gene Model: January 5th, 2016
48 days agoesr3 embryo surrounding region3: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G140302
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: May 22nd, 2014
Gene Model: January 5th, 2016
48 days agoohp1 opaque2 heterodimerizing protein1: o2 heterodimerizing protein; one of two loci
1.11
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: February 2nd, 2015
48 days agothk1 thick aleurone1: Mutants have a thick aleurone phenotype; encodes a NOT1 subunit of the CCR4-NOT complex
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: August 1st, 2020
Variation: August 1st, 2020
48 days agonot1 neighbor of tga1: compared to tga1, expressed much higher in maize than teosinte; INDEL probe (Preston et al 2011)
 
AC233751.1_FG002
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 5th, 2019
Variation: May 7th, 2015
Gene Model: October 28th, 2011
48 days agohp2 histidine-containing phosphotransfer protein2: single copy, cDNA sequence, ubiquitous
2.06
GRMZM2G014154
Muniz, LM et al. 2010. BMC Plant Biology 10:84     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: June 26th, 2014
Gene Model: June 26th, 2014
48 days agoabi3 ABI3-VP1-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.Grimault et al named this locus ZmAFL4 by homology to Arabidopsis, 2015
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 29th, 2015
48 days agodof36 C2C2-Dof-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: October 7th, 2016
48 days agonactf130 NAC-transcription factor 130: Involved in coordinating the accumulation of starch and proteins by regulating the expression of key starch biosynthetic enzymes and the major seed proteins (Zhang et al., 2019)
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 8th, 2019
48 days agobzip22 bZIP-transcription factor 22: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069   AT1G43700 (TAIR) Reference: January 16th, 2021
Gene Product: August 21st, 2018
Variation: September 24th, 2018
48 days agobetl4 basal endosperm transfer layer4: cDNA sequence, basal endosperm specific
 
GRMZM2G073290
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: July 4th, 2014
48 days agobetl1a basal endosperm transfer layer 1a:
2.09
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
48 days agocyc13 cyclin13:
4.07
GRMZM2G075117
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Variation: March 15th, 2017
Gene Model: March 15th, 2017
48 days agosweet15a sugars will eventually be exported transporter15a:
4.05
GRMZM2G168365
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: November 4th, 2015
Variation: September 1st, 2003
Gene Model: November 3rd, 2015
48 days agoohp2 opaque2 heterodimerizing protein2: cDNA sequence, SSRs nc007, phi024
5.01
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: April 25th, 2015
48 days agocki1 cyclin-dependent kinase inhibitor1:
1.08
GRMZM2G116885
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: March 8th, 2017
Variation: December 6th, 2016
Gene Model: December 6th, 2016
48 days agonkd2 naked endosperm2: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
10.06
GRMZM5G884137
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: January 3rd, 2015
Variation: December 21st, 2017
Gene Model: December 21st, 2017
48 days agocyc14 cyclin14: NCBI: cyclin-D4-2-like
1.07
GRMZM2G133413
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Variation: January 19th, 2017
Gene Model: January 19th, 2017
48 days agokrp11 kinesin-related protein11: Mutants exhibit a varied-kernel-size phenotype - segregated small seeds of varying sizes (Huang et al., 2019)
7.00
GRMZM2G436981
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: November 10th, 2017
Variation: April 9th, 2019
Gene Model: July 30th, 2015
48 days agoemb2 embryo specific2: (was emb*-8522) embryo development blocked at the transition stage, tubular
9.00 - 9.03
GRMZM5G884466
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 15th, 2012
Variation: September 8th, 2012
Gene Model: September 7th, 2012
48 days agocdc2 cell division control protein homolog2: cDNA sequence homologous to cdc2/cdc28 subfamily of serine/threonine protein kinases, complements yeast cdc28
1.01
GRMZM2G008327
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: December 29th, 2016
Variation: April 23rd, 2010
Gene Model: March 30th, 2015
48 days agocyc2 cyclin2: class II; sense RNA functions in Xenopus oocytes
3.04
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Variation: January 16th, 2014
48 days agosal1 supernumerary aleurone1: Mutant allele contains up to seven layers of aleurone cells
9.03
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: April 3rd, 2007
48 days agomybr88 MYB-related-transcription factor 88: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.09
GRMZM2G064328
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: September 1st, 2003
Gene Model: December 6th, 2016
48 days agomeg1 maternally expressed gene1: Maternally transmitted alleles preferentially expressed in endosperm
7.01
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: August 29th, 2014
48 days agoaz22z3 22kD alpha zein3: mRNA for 22kD zein; in z1c(zp22) cluster
4.01
GRMZM2G044625
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: May 31st, 2010
Gene Model: November 21st, 2014
48 days agohp3 histidine-containing phosphotransfer protein3:
4.08
GRMZM2G451604
Muniz, LM et al. 2010. BMC Plant Biology 10:84     Reference: January 16th, 2021
Variation: April 4th, 2015
Gene Model: April 4th, 2015
48 days agonrp1 no-apical-meristem-related protein1: Involved in coordinating the accumulation of starch and proteins by regulating the expression of key starch biosynthetic enzymes and the major seed proteins (Zhang et al., 2019)
 
GRMZM2G062650
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: July 8th, 2019
Variation: March 31st, 2011
Gene Model: July 28th, 2016
48 days agodek35 defective kernel35: mutants have defective kernels
 
GRMZM2G066749
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: December 27th, 2016
Variation: September 7th, 2016
Gene Model: September 7th, 2016
48 days agocki2 cyclin-dependent kinase inhibitor2:
 
GRMZM2G037926
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: March 8th, 2017
Variation: May 17th, 2017
Gene Model: March 7th, 2017
48 days agocyc15 cyclin15:
 
GRMZM2G006721
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Gene Model: December 21st, 2018
48 days agocyc16 cyclin16:
 
GRMZM2G007130
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Gene Model: December 21st, 2018
48 days agoinvinh1 invertase inhibitor1: Interacts with incw5 (Zhao et al., 2019)
 
GRMZM2G162447
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: August 7th, 2019
Gene Model: August 7th, 2019
48 days agosmc3 structural maintenance of chromosomes3: participates in meiotic centromere pairing
 
GRMZM2G456570
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: December 10th, 2019
Variation: January 30th, 2020
Gene Model: January 30th, 2020
48 days agocki5 cyclin-dependent kinase inhibitor5:
5.07
GRMZM2G101613
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
48 days agocyc21 cyclin21:
 
GRMZM2G178229
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Gene Model: November 8th, 2020
48 days agocyc22 cyclin22:
 
GRMZM2G047637
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: June 26th, 2009
Gene Model: November 8th, 2020
48 days agotcrr2 transfer cell response regulator2:
 
GRMZM2G090264
Muniz, LM et al. 2010. BMC Plant Biology 10:84     Reference: January 16th, 2021
Gene Product: January 16th, 2021
Gene Model: January 16th, 2021
48 days agoemb15 embryo specific15: mutants retard embryo development at an early stage, but does not substantially affect the endosperm; also causes an albino phenotype
 
GRMZM2G165694
Xu, CH et al. 2021. Plant J pp.doi: 10.1111/tpj.15160     Reference: January 16th, 2021
Variation: January 16th, 2021
Gene Model: January 16th, 2021
48 days agoane1 androgenic embryo1: multigene family; sequence suggests extracellular location; expressed in embryo surrounding region of developing endosperm and in basal endosperm transfer layer
4.09
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: May 11th, 2004
48 days agoane3 androgenic embryo3: single copy; specifically expressed in embryo surrounding region during early stages of endosperm development
10.03
   Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: April 13th, 2007
48 days agobetl10 basal endosperm transfer layer10: endosperm transfer cell specific protein, regulated by mrp1 myp related protein 1; probe IDP277
3.05
GRMZM2G091445
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: October 21st, 2013
Gene Model: July 4th, 2014
48 days agoIDP781  :
5.03
GRMZM2G020146
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Variation: March 31st, 2005
Gene Model: February 24th, 2020
48 days agoIDP1426  :
8.01
GRMZM2G004006
    Variation: March 31st, 2005
Gene Model: January 16th, 2021
48 days agoIDP397  :
8.01
GRMZM2G051842
    Variation: March 31st, 2005
Gene Model: January 16th, 2021
48 days agoIDP98  :
8.02
GRMZM2G155232
    Variation: March 31st, 2005
Gene Model: January 16th, 2021
48 days agocdc1 cell division control protein homolog1:
4.10
GRMZM2G174596
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: December 29th, 2016
Gene Model: December 21st, 2018
48 days agobetl9 basal endosperm transfer layer9: endosperm transfer cell specific protein regulated by mrp1 myb related protein1; RFLP gpm92
3.05
GRMZM2G087413
Dai, DW et al. 2021. J Integr Plant Biol pp.doi: 10.1111/jipb.13069     Reference: January 16th, 2021
Gene Product: September 1st, 2003
Variation: October 8th, 2009
Gene Model: July 4th, 2014
49 days agobnlg108  : encodes a non-specific lipid transfer protein (nsLTP)
2.04
GRMZM2G151021
Li, J et al. 2021. pp.doi: 10.1016/j.cj.2020.12.002     Reference: January 15th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: July 27th, 2018
49 days agoadh1 alcohol dehydrogenase1: electrophoretic mobility; null alleles are known; dimeric; intra/interlocus hybrid bands occur); SSR umc1726
1.10
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: July 8th, 2009
Variation: March 22nd, 2006
49 days agogot1 glutamate-oxaloacetate transaminase1: electrophoretic mobility; null allele is known; glyoxysomal; dimeric; intralocus hybrid bands occur
3.02
GRMZM2G094712
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: August 5th, 2014
Variation: September 1st, 2003
Gene Model: August 6th, 2014
49 days agoca2p16 CCAAT-HAP2-transcription factor 216: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: August 9th, 2016
49 days agoca2p4 CCAAT-HAP2-transcription factor4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: August 9th, 2016
49 days agotcptf44 TCP-transcription factor 44: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: September 27th, 2019
49 days agosus1 sucrose synthase1: (was sus2, css1) sucrose synthase-1 (SUS1) of embryo and other tissues, compare sh1; SSRs phi016, 032, 042
9.04
GRMZM2G152908
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: October 25th, 2006
Variation: February 1st, 2020
Gene Model: August 12th, 2014
49 days agoumc2313  :
6.01
GRMZM2G063462
Skibbe, D et al. 2002. Plant Mol Biol 48:751-764     Reference: May 4th, 2010
Variation: January 15th, 2021
Gene Model: August 19th, 2018
49 days agopyk1 pyruvate kinase1: strongly similar to plastidial pyruvate kinase 3 of A. thaliana
1.05
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: April 8th, 2011
49 days agofold1 bifunctional protein FolD1:
2.05
GRMZM2G130790
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 15th, 2021
Gene Model: March 20th, 2020
49 days agotif5A eukaryotic translation initiation factor 5A:
7.04
   Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Variation: January 13th, 2016
49 days agomkk3 MAP kinase kinase3: stress response; induced by abscisic acid
 
GRMZM2G004468
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: July 10th, 2013
Gene Model: February 23rd, 2019
49 days agopco090876  :
4.08
GRMZM2G111818
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
49 days agoago1c argonaute1c: Ortholog of Arabidopsis ago1
 
GRMZM2G039455
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823   AT1G48410 (TAIR) Reference: January 15th, 2021
Gene Product: August 12th, 2016
Gene Model: February 6th, 2016
49 days agolac9 laccase9:
 
GRMZM2G132169
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: March 31st, 2018
Gene Model: September 28th, 2016
49 days agoprh17 protein phosphatase homolog17: responds to Pi starvation
 
GRMZM2G164352
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: September 1st, 2003
Variation: April 28th, 2017
Gene Model: April 28th, 2017
49 days agofold3 bifunctional protein FolD3:
 
AC233922.1_FG005
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 15th, 2021
Gene Model: January 14th, 2021
49 days agoGRMZM2G166484  : encodes a non-specific lipid transfer protein (nsLTP)
 
GRMZM2G166484
Li, J et al. 2021. pp.doi: 10.1016/j.cj.2020.12.002     Reference: January 15th, 2021
Gene Product: September 1st, 2003
Gene Model: January 15th, 2021
49 days agoalt9 alanine aminotransferase9: putative leaf alanine transminase
7.04
GRMZM2G053999
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Gene Product: October 2nd, 2020
Variation: January 13th, 2015
Gene Model: July 23rd, 2014
49 days agofold2 bifunctional protein FolD2:
8.05
GRMZM2G150485
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 15th, 2021
Gene Model: September 1st, 2019
49 days agoIDP748  :
3.08
GRMZM2G092152
Kaur, G et al. 2021. Plant Sci pp.doi: 10.1016/j.plantsci.2021.110823     Reference: January 15th, 2021
Variation: March 31st, 2005
Gene Model: February 25th, 2019
49 days agoIDP680  :
6.01
GRMZM2G089688
    Variation: January 15th, 2021
Gene Model: January 15th, 2021
50 days agoamt8 ammonium transporter8: similar to Arabidopsis ammonium transporter 2
1.11
GRMZM5G883969
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: July 8th, 2013
Gene Model: October 19th, 2017
50 days agomets3 methionine synthase3:
1.09
GRMZM2G165747
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: July 12th, 2017
50 days agobm2 brown midrib2: brown pigmentation in the leaf midrib and tissues accumulate reduced levels of lignin; like bm1cDNA complements yeast met12 met13 mutant; one of two or more loci, second locus may be on chromosome 5 near gln4
1.11
GRMZM2G347056
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: August 28th, 2012
Variation: November 30th, 2013
Gene Model: November 30th, 2013
50 days agobm4 brown midrib4: mutant looks like bm1; encodes folylpolyglutamate synthetase
9.08
GRMZM2G393334
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: December 17th, 2014
Variation: December 17th, 2014
Gene Model: December 17th, 2014
50 days agogpc3 glyceraldehyde-3-phosphate dehydrogenase3: cytosolic, C subunit 3; coding sequence homology to gpc4, unique 3' untranslated region
4.05 - 4.04
   Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: June 1st, 2014
50 days agogcsh1 glycine cleavage system protein H1: single copy leaf cDNA, csu681
10.03
GRMZM2G399183
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: October 2nd, 2015
50 days agomets1 methionine synthase1:
1.06
GRMZM2G149751
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: February 9th, 2020
50 days agobzip7 bZIP-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.03
GRMZM2G006578
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Variation: September 8th, 2018
Gene Model: September 8th, 2018
50 days agopal2 phenylalanine ammonia lyase2:
2.04 - 2.04
GRMZM2G441347
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: February 21st, 2017
Gene Model: February 21st, 2017
50 days agohsp70-16 heat shock protein70-16:
8.03
GRMZM2G063676
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: September 18th, 2018
50 days agonlp17 NLP-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: December 3rd, 2019
50 days agodrts4 bifunctional dihydrofolate reductase-thymidylate synthase4:
4.03
GRMZM2G139880
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 12th, 2020
50 days agogst29 glutathione transferase29:
3.05
GRMZM2G127789
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
50 days agomthfr2 methylenetetrahydrofolate reductase2:
5.00
GRMZM2G034182
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: August 28th, 2012
Gene Model: August 28th, 2012
50 days agopep2 phosphoenolpyruvate carboxylase2: cDNA sequence, encodes C3 enzyme in roots (Northern blot analysis)
5.04
GRMZM2G069542
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: October 1st, 2014
Gene Model: August 13th, 2014
50 days agomets2 methionine synthase2: leaf cDNA csu194 similar to E. coli metE
5.02
GRMZM2G112149
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 27th, 2018
50 days agogmp2 mannose-1-phosphate guanylyltransferase2:
8.07
   Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: October 21st, 2020
Variation: July 29th, 2004
50 days agodrts3 bifunctional dihydrofolate reductase-thymidylate synthase3:
2.08
   Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
50 days agoadcl2 aminodeoxychorismate lyase2:
3.00
GRMZM2G087103
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: March 24th, 2020
50 days agoftcl1 5-formyltetrahydrofolate cyclo-ligase1:
 
GRMZM2G001904
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: August 20th, 2014
Gene Model: August 20th, 2014
50 days agocpps3 copalyl diphosphate synthase3: Functions as a (+)-CPP synthase
 
GRMZM2G068808
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: August 16th, 2012
Gene Model: October 27th, 2014
50 days agofgp2 folylpolyglutamate synthetase2: Paralog of bm4 also encoding FPGS
 
GRMZM5G869779
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: December 17th, 2014
Variation: December 17th, 2014
Gene Model: December 17th, 2014
50 days agoadcs1 aminodeoxychorismate synthase1:
 
GRMZM2G416386
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: October 23rd, 2018
50 days agogch1 GTP cyclohydrolase1:
 
GRMZM2G062420
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agogch2 GTP cyclohydrolase2:
 
GRMZM2G106376
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agodhna1 dihydroneopterin aldolase1:
 
GRMZM2G015588
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agodhna2 dihydroneopterin aldolase2:
 
GRMZM2G095579
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agohppk1 hydroxymethyldihydropterin pyrophosphokinase1:
 
GRMZM2G095806
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agoadcl3 aminodeoxychorismate lyase3:
 
GRMZM2G069596
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agodhfs2 dihydrofolate synthetase2:
 
GRMZM2G169481
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agodrts1 bifunctional dihydrofolate reductase-thymidylate synthase1:
 
GRMZM2G072608
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: January 14th, 2021
50 days agodrts2 bifunctional dihydrofolate reductase-thymidylate synthase2:
 
GRMZM2G421493
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: January 14th, 2021
50 days agogcsh2 glycine cleavage system protein H2:
 
GRMZM2G010321
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: January 14th, 2021
50 days agogcsh3 glycine cleavage system protein H3:
 
GRMZM2G051208
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: January 14th, 2021
50 days agogcsh4 glycine cleavage system protein H4:
 
GRMZM2G020288
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Gene Model: January 14th, 2021
50 days agoftd1 formyltetrahydrofolate deformylase1:
 
GRMZM2G168281
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agofths1 formate--tetrahydrofolate ligase1:
 
GRMZM5G824944
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: January 14th, 2021
50 days agoftcl2 5-formyltetrahydrofolate cyclo-ligase2:
 
GRMZM5G807835
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: August 20th, 2014
Gene Model: January 14th, 2021
50 days agocbl4 calcineurin B-like2:
6.06
GRMZM2G001221
Griffiths, M et al. 2020. Plant Physiol pp.doi: 10.1093/plphys/kiaa080     Reference: January 14th, 2021
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
50 days agoshmt1 serine hydroxymethyltransferase1:
1.10
GRMZM2G135283
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: September 1st, 2003
Variation: March 31st, 2005
Gene Model: February 13th, 2019
50 days agoammt1 aminomethyltransferase1:
2.02
GRMZM5G876898
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Variation: March 31st, 2005
Gene Model: February 18th, 2019
50 days agoIDP113  :
4.09
GRMZM2G027479
    Variation: March 31st, 2005
Gene Model: January 14th, 2021
50 days agoIDP1451  :
5.03
GRMZM2G084021
    Variation: March 31st, 2005
Gene Model: January 14th, 2021
50 days agoIDP1625  :
5.05
GRMZM2G001033
    Variation: March 31st, 2005
Gene Model: January 14th, 2021
50 days agoIDP471  :
5.08
GRMZM2G150984
    Variation: March 31st, 2005
Gene Model: January 14th, 2021
50 days agoadcl1 aminodeoxychorismate lyase1:
1.04
GRMZM2G108416
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: February 7th, 2020
50 days agodhfs1 dihydrofolate synthetase1:
10.03
GRMZM2G304915
Lian, T et al. 2015. BMC Plant Biology 15:204     Reference: January 14th, 2021
Gene Product: January 14th, 2021
Gene Model: June 30th, 2020
51 days agohcp101b  :
4.10
       Variation: January 13th, 2021
51 days agodef4 defensin-like protein4:
 
GRMZM2G153488
Al Kashgry, NAT et al. 2020. AMB Express 10:208     Reference: January 13th, 2021
Gene Product: July 25th, 2018
Gene Model: September 16th, 2017
51 days agoIDP155  :
4.11
GRMZM2G131087
    Variation: March 31st, 2005
Gene Model: January 13th, 2021
51 days agoIDP1684  :
4.06
GRMZM2G137029
    Variation: March 31st, 2005
Gene Model: January 13th, 2021
51 days agoIDP636  :
4.05
GRMZM2G179810
    Variation: March 31st, 2005
Gene Model: January 13th, 2021
51 days agoIDP642  :
4.05
GRMZM2G159700
    Variation: March 31st, 2005
Gene Model: January 13th, 2021
52 days agobrk3 brick3: Involved in formation of epidermal cell lobes as well as for properly polarized divisions of stomatal subsidiary mother cells.
10.01 - 10.02
GRMZM2G180150
Fagny, M et al. 2021. Frontiers in Plant Genetics and Genomics 12:606285   AT2G35110 (TAIR)
Os08G0544500 (Gramene)
Reference: January 12th, 2021
Gene Product: August 12th, 2015
Variation: August 12th, 2015
Gene Model: August 11th, 2015
52 days agouce3 ubiquitin conjugating enzyme3:
1.01
GRMZM2G070047
Wang, HY et al. 2021. Ecotoxicol Environ Safety 211:111909     Reference: January 12th, 2021
Gene Product: December 19th, 2019
Variation: February 15th, 2015
Gene Model: February 16th, 2015
52 days agouce17 ubiquitin conjugating enzyme17: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
9.04
GRMZM2G163398
Wang, HY et al. 2021. Ecotoxicol Environ Safety 211:111909     Reference: January 12th, 2021
Gene Product: December 19th, 2019
Gene Model: November 26th, 2019
52 days agoplc6 phospholipase C6: similar to Arabidopsis phospholipase C
1.11
   Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Variation: September 25th, 2007
52 days agoplc1 phospholipase C1:
 
GRMZM5G889467
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: December 6th, 2016
52 days agoplc8 phospholipase C8: candidate gene for husk length (HL)
 
GRMZM2G479112
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: July 26th, 2018
52 days agoemp602 empty pericarp602: mutants have an empty pericarp; loss of mature Nad4 transcripts
 
GRMZM2G464510
Xiu, Z-H et al. 2020. Frontiers Plant Sci 11:608550   AT1G02420 (TAIR)
LOC_Os03g11020 (MSU/TIGR)
Reference: January 12th, 2021
Gene Product: December 27th, 2016
Variation: January 11th, 2021
Gene Model: May 13th, 2019
52 days agouce15 ubiquitin-conjugating enzyme15: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
 
GRMZM2G063931
Wang, HY et al. 2021. Ecotoxicol Environ Safety 211:111909     Reference: January 12th, 2021
Gene Product: December 19th, 2019
Gene Model: December 19th, 2019
52 days agouce16 ubiquitin-conjugating enzyme16: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
 
GRMZM2G312693
Wang, HY et al. 2021. Ecotoxicol Environ Safety 211:111909     Reference: January 12th, 2021
Gene Product: December 19th, 2019
Gene Model: December 19th, 2019
52 days agouce19 ubiquitin-conjugating enzyme19: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
 
GRMZM2G341089
Wang, HY et al. 2021. Ecotoxicol Environ Safety 211:111909     Reference: January 12th, 2021
Gene Product: December 19th, 2019
Gene Model: December 19th, 2019
52 days agoemp25 empty pericarp25: mutants impair embryo and endsperm development; deficient in the splicing of nad5 introns
 
GRMZM2G312954
Xiu, Z-H et al. 2020. Frontiers Plant Sci 11:608550     Reference: January 12th, 2021
Gene Product: December 27th, 2016
Variation: January 11th, 2021
Gene Model: January 11th, 2021
52 days agoplc2 phospholipase C2:
 
GRMZM2G114354
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc3 phospholipase C3:
 
GRMZM2G129238
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc4 phospholipase C4:
 
GRMZM2G137435
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc5 phospholipase C5:
 
GRMZM2G157760
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc7 phospholipase C7:
 
GRMZM2G116876
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc9 phospholipase C9:
 
GRMZM2G422670
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
52 days agoplc10 phospholipase C10:
 
   Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
52 days agoplc11 phospholipase C11:
 
GRMZM2G081719
Zhu, JT et al. 2021. Frontiers in Plant Genetics and Genomics 12:611414     Reference: January 12th, 2021
Gene Product: January 12th, 2021
Gene Model: January 12th, 2021
53 days agorap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
GRMZM2G700665
Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Gene Product: July 5th, 2019
Variation: July 24th, 2019
Gene Model: November 20th, 2012
53 days agortcs1 rootless concerning crown and seminal roots1: root system reduced solely to a primary root yet plants can be carried to seed; cyclin cDNAs absent; naphthalene acetic acid induces adventitious roots
1.02
GRMZM2G092542
Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Gene Product: October 5th, 2009
Variation: October 5th, 2009
Gene Model: July 23rd, 2013
53 days agocyc4 cyclin4:
8.08
GRMZM2G310115
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Variation: January 17th, 2014
Gene Model: November 5th, 2014
53 days agort1 rootless1: secondary roots few or absent
3.04
   Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Variation: September 1st, 2003
53 days agolrt1 lateral rootless1: few lateral root primordia form in primary and seminal roots, none proliferate; no response to naphthalene acetic acid or indole acetic acid; responds to indole butyric acid and to S-nitroso-N-acetylpenicillamine, a nitric oxide (NO) donor (Schlicht et al 2013)
2.00 - 2.03
   Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Variation: September 1st, 2003
53 days agoiaa5 Aux/IAA-transcription factor5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.11
GRMZM5G809195
Jiang, L et al. 2021. Agron J pp.doi: 10.1002/agj2.20594     Reference: January 11th, 2021
Variation: September 28th, 2016
Gene Model: September 29th, 2016
53 days agocta1 chitinase A1: cDNA sequence corresponds to peptide sequence of maize 28kDa chitinase A
2.04
   Naz, R et al. 2021. Sci. Rep. 11:59     Reference: January 11th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
53 days agoiaa11 Aux/IAA-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
GRMZM2G167794
Jiang, L et al. 2021. Agron J pp.doi: 10.1002/agj2.20594     Reference: January 11th, 2021
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
53 days agoiaa4 Aux/IAA-transcription factor4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.10
GRMZM2G159285
Jiang, L et al. 2021. Agron J pp.doi: 10.1002/agj2.20594     Reference: January 11th, 2021
Variation: November 15th, 2016
Gene Model: November 15th, 2016
53 days agoiaa28 Aux/IAA-transcription factor 28: gene product physically interacts with LA1 (Dong et al 2013)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Jiang, L et al. 2021. Agron J pp.doi: 10.1002/agj2.20594     Reference: January 11th, 2021
Variation: July 8th, 2017
53 days agoiaa22 Aux/IAA-transcription factor 22: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
GRMZM2G128421
Jiang, L et al. 2021. Agron J pp.doi: 10.1002/agj2.20594     Reference: January 11th, 2021
Variation: September 1st, 2003
Gene Model: June 16th, 2018
53 days agotga1 teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte
4.05
GRMZM2G101511
Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Gene Product: July 5th, 2019
Variation: May 7th, 2015
Gene Model: October 28th, 2011
53 days agocyc3 cyclin3: classIII; sense RNA functions in Xenopus oocytes; SSR umc1186
6.02
   Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Variation: January 17th, 2014
53 days agocyc1 cyclin1: classI; sense RNA functions in Xenopus oocytes
8.05
   Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Variation: September 25th, 2007
53 days agocyc7 cyclin7: Class I; sense RNA functions in Xenopus oocytes
3.06
GRMZM2G073003
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Variation: October 23rd, 2012
Gene Model: August 16th, 2019
53 days agoprp7 pathogenesis-related protein7:
1.03
GRMZM2G112524
Naz, R et al. 2021. Sci. Rep. 11:59     Reference: January 11th, 2021
Gene Product: July 25th, 2018
Gene Model: September 30th, 2017
53 days agortcl1 RTCS-like1: homologous to rtcs1
9.07
AC149818.2_FG009
Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Variation: January 20th, 2016
Gene Model: May 18th, 2012
53 days agocyc8 cyclin8: functions primarily during the mitotic cell cycle during maize endosperm development
 
GRMZM2G138886
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Gene Model: November 5th, 2014
53 days agozar8 Zea mays ARGOS8: Over-expression can lead to improved drought tolerance
 
GRMZM2G354338
Hostetler, AN et al. 2021. Curr Opin Plant Biol 59:101985     Reference: January 11th, 2021
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
53 days agoltp1 lipid transfer protein1:
 
GRMZM2G320373
Naz, R et al. 2021. Sci. Rep. 11:59     Reference: January 11th, 2021
Gene Product: September 1st, 2003
Gene Model: August 1st, 2016
53 days agodrg6 dark response gene6:
 
GRMZM2G112538
Naz, R et al. 2021. Sci. Rep. 11:59     Reference: January 11th, 2021
Gene Product: July 25th, 2018
Gene Model: June 6th, 2020
53 days agocyc23 cyclin23:
 
GRMZM2G061287
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Gene Model: January 11th, 2021
53 days agocyc24 cyclin24:
 
GRMZM2G025200
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Gene Model: January 11th, 2021
53 days agocyc25 cyclin25:
 
GRMZM2G062453
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Gene Model: January 11th, 2021
53 days agocyc5 cyclin5:
8.01
GRMZM2G005619
Lara-Nunez, A et al. 2021. Biochimie pp.doi: 10.1016/j.biochi.2020.12.013     Reference: January 11th, 2021
Gene Product: June 26th, 2009
Variation: January 18th, 2014
Gene Model: November 5th, 2014
55 days agocdpk22 calcium dependent protein kinase22:
 
GRMZM2G053868
Wang, DP et al. 2021. BMC Plant Biology 21:34     Reference: January 9th, 2021
Gene Product: December 3rd, 2013
Gene Model: January 10th, 2018
55 days agoxth8 xyloglucan endo-transglycosylase/hydrolase8:
 
GRMZM2G091118
Wang, DP et al. 2021. BMC Plant Biology 21:34     Reference: January 9th, 2021
Gene Product: January 9th, 2021
Gene Model: January 9th, 2021
55 days agoxth7 xyloglucan endo-transglycosylase/hydrolase7:
 
GRMZM2G063566
    Gene Product: January 9th, 2021
Gene Model: January 9th, 2021
55 days agoxth2 xyloglucan endo-transglycosylase/hydrolase2:
 
GRMZM2G128876
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Gene Model: January 9th, 2021
55 days agoxth4 xyloglucan endo-transglycosylase/hydrolase4:
 
GRMZM2G166944
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Gene Model: January 9th, 2021
55 days agoxth5 xyloglucan endo-transglycosylase/hydrolase5:
5.03
GRMZM2G413006
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Gene Model: May 10th, 2020
55 days agoxth1 xyloglucan endo-transglycosylase/hydrolase1:
10.03
GRMZM2G119783
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Variation: January 25th, 2015
Gene Model: September 5th, 2012
55 days agoxth3 xyloglucan endo-transglycosylase/hydrolase3:
10.03
GRMZM2G364748
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Gene Model: July 2nd, 2020
55 days agoxth6 xyloglucan endo-transglycosylase/hydrolase6:
4.08
GRMZM2G004699
Genovesi, V et al. 2008. J Exp Bot 59:875-889     Reference: February 4th, 2011
Gene Product: January 9th, 2021
Gene Model: April 24th, 2020
56 days agoyab10 yabby homolog10:
1.07
   Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Gene Product: October 16th, 2015
Variation: March 23rd, 2009
Recommended by Marty Sachs:
March 7th, 2007
56 days agofat2 fatty acyl-ACP thioesterase2:
9.02
GRMZM5G829544
Liu, J et al. 2021. Plant Comm 1:100010   AT1G08510 (TAIR) Reference: January 8th, 2021
Gene Product: May 23rd, 2012
Variation: May 23rd, 2012
Gene Model: May 23rd, 2012
Recommended by Lin Li:
May 24th, 2012
56 days agocsu1187  :
6.01
GRMZM2G102737
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: September 1st, 2003
Gene Model: July 9th, 2020
56 days agosudh1 succinate dehydrogenase1:
7.00
GRMZM2G064799
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
56 days agobm1 brown midrib1: brown pigment over vascular bundles of leaf sheath, midrib, and blade, especially evident on the midribs of healthy leaves at flowering; lignin content at maturity 86% of normal; encodes cinnamyl alcohol dehydrogenase
5.04
   Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: September 1st, 2003
Variation: November 17th, 2020
56 days agokan1 KANADI1:
1.05
   Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: January 31st, 2015
56 days agoln1 linoleic acid1: lower ratio of oleate to linoleate in kernelembryo oil content and composition,cloned by chromosome walk to high oil QTL; maybe allele of ln1 (Zheng 2008)
6.04 - 6.04
GRMZM2G169089
Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Gene Product: August 12th, 2018
Variation: August 16th, 2014
Gene Model: August 15th, 2014
56 days agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
   Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Gene Product: April 11th, 2007
Variation: August 20th, 2010
56 days agoaps1 ATP sulfurylase1:
1.10
GRMZM2G149952
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: September 1st, 2003
Variation: September 26th, 2017
Gene Model: September 26th, 2017
56 days agodof3 DNA binding with one finger3: cDNA sequence distinct from dof1, dof2
6.01
GRMZM2G179069
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: September 1st, 2003
Variation: April 18th, 2008
Gene Model: August 29th, 2013
56 days agoplatz5 PLATZ-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G131280
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: February 16th, 2018
Gene Model: February 16th, 2018
56 days agoumc1349  :
5.04
GRMZM2G170742
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: September 1st, 2003
Gene Model: June 29th, 2018
56 days agobhlh12 bHLH-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: September 14th, 2016
56 days agozag2 Zea AGAMOUS homolog2: amino acid sequence, deduced from cDNA sequence, has 49% identity to Arabidopsis, floral homeotic gene product; expression restricted to female inflorescence; near ts4
3.05 - 3.05
   Xu, G, et al. 2020. Nature communications. 11:5539     Reference: January 8th, 2021
Gene Product: April 1st, 2011
Variation: October 22nd, 2014
56 days agoumc2230  : NCBI:probable xyloglucan endotransglucosylase/hydrolase protein 27
1.05
GRMZM2G070271
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: January 10th, 2017
Gene Model: June 15th, 2017
56 days agogshs2 glutathione synthetase2:
3.05
GRMZM2G155974
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: December 2nd, 2018
Variation: September 25th, 2007
Gene Model: December 1st, 2018
56 days agoyab12 C2C2-YABBY-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G085873
Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Gene Product: October 16th, 2015
Gene Model: October 16th, 2015
56 days agosweet13b sugars will eventually be exported transporter13b:
 
GRMZM2G021706
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: November 3rd, 2015
56 days agosweet13c sugars will eventually be exported transporter13c:
 
GRMZM2G179349
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: November 3rd, 2015
56 days agomha3 membrane H(+)-ATPase3:
 
GRMZM2G104325
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: September 1st, 2003
Variation: January 22nd, 2016
Gene Model: January 22nd, 2016
56 days agopcr3 protochlorophyllide reductase3: localized in chloroplast; overexpression increased tocopherol content in leaves and kernels (Zhan et al., 2019)
 
GRMZM2G073351
Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Gene Product: June 8th, 2019
Variation: June 8th, 2019
Gene Model: October 4th, 2017
56 days agoauxrp1 auxin-regulated protein1: involved in stalk-rot disease resistance; encodes an auxin-regulated protein with a single DUF966 domain
 
GRMZM2G063298
Liu, J et al. 2021. Plant Comm 1:100010     Reference: January 8th, 2021
Variation: October 30th, 2018
Gene Model: October 30th, 2018
56 days agosweet13a sugars will eventually be exported transporter13a:
10.03
GRMZM2G173669
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: November 4th, 2015
Variation: February 17th, 2018
Gene Model: December 28th, 2017
56 days agoIDP279  :
8.08
   Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Variation: March 31st, 2005
56 days agoumi12 ustilago maydis induced12:
1.10
GRMZM2G149923
Bezrutczyk, M et al. 2021. Plant Cell pp.doi: 10.1093/plcell/koaa055     Reference: January 8th, 2021
Gene Product: January 12th, 2015
Variation: April 17th, 2008
Gene Model: January 12th, 2015
57 days agobhlh148 bHLH-transcription factor 148: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
   Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Variation: September 25th, 2007
57 days agowox9c WUSCHEL related homeobox 9c: late embryo in outer layer of suspensor through leaf 4 stage
 
GRMZM2G409881
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
57 days agowox9b WUSCHEL related homeobox 9b: expressed in late embryo stages;in suspensor and also, unlike wox9c, in the shoot apical meristem (SAM)
 
GRMZM2G031882
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
57 days agoer3 erecta-like3: EPF/TMM/ERECTA module reflects a conserved, universal mechanism in the plant kingdom. Involved in control stomatal density and distribution
9.03
   Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: July 10th, 2019
57 days agoga2ox1 gibberellin 2-oxidase1: Bolduc and Hake (Plant Cell 21:1647-58, 2009) identify this ga2ox as ga2ox1 by phylogeny. See Supplemental Figure 6. Comparison of syntenic regions containing ga2ox1 in different grasses. They also show that it is a direct target of KN1.
 
GRMZM2G078798
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: October 27th, 2014
Variation: November 20th, 2012
Gene Model: November 20th, 2012
57 days agopep3 phosphoenolpyruvate carboxylase3: possibly duplicate gene; both pep2 and pep3 hybridize to a C3 PEPCase isozyme genomic probe, p-H1(lambda)22 and to root PEPCase cDNA.
4.08
GRMZM2G473001
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: September 1st, 2003
Variation: April 10th, 2015
Gene Model: August 13th, 2014
57 days agowox3a WUSCHEL homeobox 3A: embryonic transcription factor; expression in embryonic leaf similar to wox3b, but distinct from ns1/ns2 also in the wox3 gene family (Nardmann et al 2007)
6.01
GRMZM2G122537
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: August 25th, 2017
Variation: August 19th, 2018
Gene Model: August 18th, 2018
57 days agoumc1149  : NCBI: Glutathione S-transferase family
8.06
GRMZM2G105005
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: September 1st, 2003
Variation: April 18th, 2017
Gene Model: April 18th, 2017
57 days agoumc1495  :
3.04
GRMZM2G161154
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
57 days agowox13b WUSCHEL-related homeobox transcription factor 13b:
 
   Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: August 25th, 2017
57 days agowox13a WUSCHEL-related homeobox-transcription factor 13a:
 
   Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: August 25th, 2017
57 days agopip1b plasma membrane intrinsic protein1:
5.06
   Fox, AR et al. 2021. New Phytol 228:973-988     Reference: January 7th, 2021
Gene Product: September 1st, 2003
Variation: April 26th, 2016
57 days agopip2f plasma membrane intrinsic protein2:
7.02
   Fox, AR et al. 2021. New Phytol 228:973-988     Reference: January 7th, 2021
Gene Product: September 1st, 2003
Variation: March 26th, 2013
57 days agoapt1 aberrant pollen transmission1: Ac-tagged mutation, pollen-grain specific pollen tube shortening and twisting
9.04
GRMZM2G448687
Fox, AR et al. 2021. New Phytol 228:973-988     Reference: January 7th, 2021
Variation: October 15th, 2012
Gene Model: May 31st, 2014
57 days agombd117 methyl binding domain117:
2.07
GRMZM2G048411
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: December 24th, 2015
Variation: February 5th, 2010
Gene Model: December 24th, 2015
57 days agoras6A1 ras-related protein6A1:
 
GRMZM2G075719
Fox, AR et al. 2021. New Phytol 228:973-988     Reference: January 7th, 2021
Variation: January 20th, 2011
Gene Model: September 10th, 2018
57 days agomrpa6 multidrug resistance associated protein6:
 
GRMZM2G142870
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: July 11th, 2019
Gene Model: January 12th, 2016
57 days agodrm1 dormancy associated1: lower expression overcomes tiller repression of tb1 in certain maize lines; e.g., P39 (Kebrom & Brutnell, 2015)
 
GRMZM2G123896
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: September 25th, 2015
Variation: September 25th, 2015
Gene Model: September 25th, 2015
57 days agoppr53 pentatricopeptide repeat53: mutants exhibit a range of chlorotic phenotypes; specifically reduce transcript levels of ndhA (cp) and rrn23 (cp)
 
GRMZM2G438524
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117   AT5G46580 (TAIR) Reference: January 7th, 2021
Gene Product: December 27th, 2016
Variation: December 9th, 2015
Gene Model: December 9th, 2015
57 days agocyp21 cytochrome P-450 21: similar to Flavonoid 3'-monooxygenase of A. thaliana
 
GRMZM2G054603
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117   AT5G09970 (TAIR)
LOC_Os10g26340 (MSU/TIGR)
Reference: January 7th, 2021
Gene Product: August 18th, 2015
Gene Model: March 16th, 2017
57 days agocrn1 coryne1: involved in shoot apical meristem (SAM) development; functions downstream of fea2; mutants develop fasciated ears
 
GRMZM2G032132
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117   AT5G13290 (TAIR) Reference: January 7th, 2021
Gene Product: July 10th, 2019
Gene Model: May 21st, 2018
57 days agopepr2 plant elicitor peptide receptor2:
 
GRMZM2G428554
Satterlee, JW; Strable, J; Scanlon, MJ. 2020. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.2018788117     Reference: January 7th, 2021
Gene Product: July 10th, 2019
Gene Model: October 15th, 2020
57 days agoIDP2392  :
10.04
GRMZM2G155543
Fox, AR et al. 2021. New Phytol 228:973-988     Reference: January 7th, 2021
Variation: March 31st, 2005
Gene Model: January 1st, 2018
58 days agozmm7 Zea mays MADS7: identified by Northern analysis; expression female-specific, late onset
7.03
   Yang, XY et al. 2021. Genome Biol 22:15     Reference: January 6th, 2021
Gene Product: April 1st, 2011
Variation: August 8th, 2008
58 days agocry4 cryptochrome4:
4.05
   Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: August 31st, 2018
58 days agoaco5 aconitase5:
2.07
   Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Variation: April 5th, 2019
58 days agohsp70-5 heat shock protein70-5:
2.07
GRMZM2G365374
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Gene Model: February 20th, 2019
58 days agogpc1 glyceraldehyde-3-phosphate dehydrogenase1: cytosolic, C subunit, type 3 gene; coding region has sequence homology to gpc2, unique 3' untranslated region, constitutive expression; SSRs phi026, 079
4.05
   Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Variation: September 1st, 2003
58 days agoumc1385  :
8.03
AC234185.1_FG004
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Variation: September 1st, 2003
Gene Model: August 28th, 2019
58 days agoabh5 abscisic acid 8'-hydroxylase5:
 
GRMZM2G002142
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: February 15th, 2013
Gene Model: February 15th, 2013
58 days agotcptf9 TCP-transcription factor 9: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: September 27th, 2019
58 days agocyp25 cytochrome P-450 25:
4.09
GRMZM2G070508
Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: March 25th, 2019
Gene Model: June 8th, 2018
58 days agorpl17a ribosomal protein L17a: endosperm cDNA 5C05G01, similar to barley ribosomal protein
8.03
GRMZM2G119169
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Variation: June 7th, 2013
Gene Model: August 7th, 2014
58 days agomkkk27 MAP kinase kinase kinase27: function inferred from sequence similarity (Kong et al 2013)
2.08
GRMZM2G089159
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: July 10th, 2013
Gene Model: July 11th, 2013
58 days agoaprl2 adenosine 5'-phosphosulfate reductase-like2:
2.07
GRMZM2G087254
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: December 18th, 2015
58 days agopme4 pectin methylesterase4:
 
GRMZM2G060400
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 10th, 2018
Gene Model: June 4th, 2012
58 days agocyp19 cytochrome P-450 19:
 
GRMZM2G102079
Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: September 26th, 2016
Gene Model: September 26th, 2016
58 days agorte6 rotten ear6: phylogenetically related to Class II clade boron transporters
 
GRMZM2G454327
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
58 days agocyp24 cytochrome P-450 24:
 
GRMZM2G023952
Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: March 25th, 2019
Gene Model: February 27th, 2018
58 days agoaldh20 aldehyde dehydrogenase20:
 
GRMZM2G130440
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Gene Model: October 2nd, 2019
58 days agopdi13 protein disulfide isomerase13:
 
GRMZM2G376542
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Gene Model: August 4th, 2020
58 days agophi2 phosphohexose isomerase2:
 
GRMZM2G076075
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: September 1st, 2003
Gene Model: October 21st, 2020
58 days agotcptf45 TCP-transcription factor 45:
 
   Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: September 27th, 2019
58 days agocry1 cryptochrome1:
5.05
GRMZM2G024739
Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Gene Product: August 31st, 2018
Gene Model: August 31st, 2018
58 days agopin2 PIN-formed protein2: see pin1
5.06
GRMZM2G074267
Yang, XY et al. 2021. Genome Biol 22:15     Reference: January 6th, 2021
Gene Product: April 21st, 2014
Variation: June 11th, 2007
Gene Model: June 7th, 2012
58 days agonactf23 NAC-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models. similar to protein ATAF2 of A. thaliana
8.08
GRMZM2G068973
Ming, HN et al. 2021. J Plant Physiol 257:153328     Reference: January 6th, 2021
Variation: March 31st, 2005
Gene Model: June 14th, 2019
58 days agohdac6 histone deacetylase6:
8.03
GRMZM2G046824
Zhang, N; Huang, XQ. 2021. PLoS One 16:e0245129     Reference: January 6th, 2021
Gene Product: February 12th, 2020
Gene Model: February 12th, 2020
59 days agoagpsl1 ADP glucose pyrophosphorylase small subunit leaf1: leaf-specific
1.07
GRMZM2G163437
Zhong, Y et al. 2021. Genet Resour Crop Evol pp.doi: 10.1007/s10722-020-01085-1     Reference: January 5th, 2021
Gene Product: September 1st, 2003
Variation: April 3rd, 2011
Gene Model: June 15th, 2012
59 days agohb75 Homeobox-transcription factor 75: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G001289
Lee, Y-S et al. 2021. Nature Plants pp.doi: 10.1038/s41477-020-00818-5     Reference: January 5th, 2021
Variation: September 1st, 2003
Gene Model: February 6th, 2018
59 days agosert2 serrate ortholog2:
4.05
GRMZM2G377165
Zhong, Y et al. 2021. Genet Resour Crop Evol pp.doi: 10.1007/s10722-020-01085-1   AT2G27100 (TAIR) Reference: January 5th, 2021
Gene Product: December 6th, 2019
Variation: September 1st, 2003
Gene Model: June 7th, 2018
59 days agoarftf26 ARF-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Zhong, Y et al. 2021. Genet Resour Crop Evol pp.doi: 10.1007/s10722-020-01085-1     Reference: January 5th, 2021
Variation: July 7th, 2017
59 days agoago5b argonaute5b:
 
GRMZM2G059033
Lee, Y-S et al. 2021. Nature Plants pp.doi: 10.1038/s41477-020-00818-5     Reference: January 5th, 2021
Gene Product: August 12th, 2016
Gene Model: August 13th, 2016
59 days agocyc10 cyclin10: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
GRMZM2G107377
Zhong, Y et al. 2021. Genet Resour Crop Evol pp.doi: 10.1007/s10722-020-01085-1     Reference: January 5th, 2021
Gene Product: June 26th, 2009
Variation: December 21st, 2016
Gene Model: December 21st, 2016
59 days agoIDP1417  :
7.00
GRMZM2G019200
Zhong, Y et al. 2021. Genet Resour Crop Evol pp.doi: 10.1007/s10722-020-01085-1     Reference: January 5th, 2021
Variation: March 31st, 2005
Gene Model: January 30th, 2019
60 days agopprsmr1 pentatricopeptide repeat smr1: mutants have empty pericarp
2.02
   Dai, DW et al. 2021. Mol Breed 41:2   AT1G79490 (TAIR) Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: July 1st, 2019
60 days agoae1 amylose extender1: glassy, tarnished endosperm; high amylose content; application: highly linear starch is used for food films, fibers, and other industrial purposes
5.04
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 6th, 2011
Variation: March 20th, 2020
60 days agodek10 defective kernel10: collapsed endosperm; lethal; cultured embryos green, curled, stubby; encodes a E-subgroup PPR protein
4.06 - 4.11
GRMZM2G087226
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: February 20th, 2017
Gene Model: February 20th, 2017
60 days agodek19 defective kernel19: collapsed opaque endosperm; lethal; cultured embryos green
6.01 - 6.08
GRMZM2G111984
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: November 13th, 2018
Gene Model: November 13th, 2018
60 days agodek2 defective kernel2: discolored, scarred endosperm; lethal; cultured embryos green
1.06 - 1.12
GRMZM2G110851
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
60 days agodek5 defective kernel5: shrunken endosperm; white seedling with green stripes
3.02
GRMZM2G083374
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 28th, 2019
Variation: June 27th, 2019
Gene Model: June 27th, 2019
60 days agofl1 floury endosperm1: (was o4) endosperm opaque, soft; dosage effect with fl1-ref allele, but o4 allele is recessive
2.04
GRMZM2G094532
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: July 8th, 2013
Variation: September 16th, 2010
Gene Model: July 8th, 2013
60 days agofl2 floury2: endosperm opaque, soft; dosage effect; encodes an abnormal 24kDa alpha-zein, blocked in removal of its signal peptide, preventing transfer to lumen of the endoplasmic reticulummRNA for 22kD zein; in z1c(zp22) cluster
4.03
GRMZM2G397687
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: October 17th, 2014
Gene Model: December 19th, 2011
60 days agofl3 floury3: endosperm opaque, soft; dosage effect
8.03
GRMZM2G006585
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 7th, 2017
Variation: September 7th, 2017
Gene Model: September 7th, 2017
60 days agoemp4 empty pericarp4: mitochondrion pentatricopeptide repeat (PPR) protein involved in specific expression of mitochondrial transcripts; impaired differentiation of basal endosperm transfer cells
1.10
GRMZM2G092198
Dai, DW et al. 2021. Mol Breed 41:2   LOC_Os03g51840 (MSU/TIGR)
Os03g0728200 (Gramene)
Reference: January 4th, 2021
Gene Product: September 15th, 2012
Variation: November 21st, 2016
Gene Model: November 29th, 2011
60 days agosmu2 suppressors of mec-8 and unc-52 (C.elegans): non-organellar pre-mRNA splicing
10.00
GRMZM2G430745
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 22nd, 2009
Variation: November 17th, 2009
Gene Model: January 22nd, 2016
60 days agomc1 mucronate1: dominant Mc1 kernels have opaque endospermendosperm-specific protein cDNA
2.06
GRMZM2G060429
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 17th, 2010
Variation: September 16th, 2010
Gene Model: August 4th, 2018
60 days agomdh4 malate dehydrogenase4: electrophoretic mobility; null allele is known; cytosolic; dimeric; intra/interlocus hybrid bands occur; probed by csu77
1.08
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: May 22nd, 2020
60 days agoo1 opaque endosperm1: endosperm starch soft, opaque
4.08 - 4.08
GRMZM2G449909
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: October 9th, 2017
Gene Model: August 28th, 2012
60 days agoo10 opaque endosperm10: like o1
 
GRMZM2G346263
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: August 20th, 2016
Variation: August 20th, 2016
Gene Model: August 20th, 2016
60 days agoo5 opaque endosperm5: like o1; virescent to yellow or white seedlings
7.02
GRMZM2G142873
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 17th, 2011
Variation: August 29th, 2011
Gene Model: September 19th, 2011
60 days agoo7 opaque endosperm7: like o1; high lysine content
10.07
GRMZM2G074759
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 20th, 2011
Variation: February 20th, 2012
Gene Model: December 16th, 2011
60 days agopro1 proline responding1: (allele o6) crumpled opaque kernel; green-striped lethal seedling; responds to proline in culture
8.04
GRMZM2G375504
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 19th, 2015
Variation: September 18th, 2018
Gene Model: June 22nd, 2014
60 days agose1 sugary-enhancer1: high sugar content with su1; light yellow endosperm; freely wrinkled in Ill677a
2.10 - 2.10
AC217415.3_FG004
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 24th, 2019
Variation: May 4th, 2015
Gene Model: May 2nd, 2015
60 days agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: October 25th, 2006
Variation: June 9th, 2020
60 days agowx1 waxy1: amylopectin (stained red by iodine) replaces amylose (blue staining) in endosperm and pollen; extensive allelic series; application: highly branched starch has gelling properties, used for food gels, adhesives, and other industrial purposes; SSRs phi022, 027, 061NCBI: granule-bound starch synthase 1, chloroplastic/amyloplastic
9.03
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 4th, 2008
Variation: September 28th, 2020
60 days agodek605 defective kernel605: mutants have delayed seed and seedling development
5.05
GRMZM2G114241
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: August 21st, 2020
Gene Model: July 10th, 2018
60 days agodek33 defective kernel33: opaque, floury, dented, wrinkled kernel with floury endosperm; occasionally viviparous
5.04 - 5.05
GRMZM2G090068
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: November 13th, 2018
Variation: November 13th, 2018
Gene Model: November 13th, 2018
60 days agoemp2 empty pericarp 2: germless, unfilled kernel
2.06
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Variation: September 21st, 2011
60 days agoabi22 ABI3-VP1-transcription factor 22: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.Grimault et al named this loci ZmAFL1- homology to Arabidopsis, 2015
 
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: July 29th, 2015
Variation: August 19th, 2015
60 days agoabi49 ABI3-VP1-transcription factor 49: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.Grimault et al named this locus ZmAFL5 by homology to Arabidopsis, 2015
 
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: July 29th, 2015
60 days agoshai1 shohai1: loss of function mutants cause variable morphological defects in the embryo including small scutellum, shoot axis bifurcation and arrest during early organogenesis
 
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 3rd, 2019
Variation: June 15th, 2018
60 days agorbm48 RNA binding motif protein 48: Encodes a U12 splicing factor; mutants have a rough endosperm phenotype
 
GRMZM2G163247
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 7th, 2019
Variation: March 7th, 2019
Gene Model: February 15th, 2019
60 days agoparp1 poly(ADP-ribose) polymerase1:
8.03
GRMZM2G099231
Muli, JK et al. 2018. Plant 6:8-15     Reference: April 28th, 2018
Gene Product: September 7th, 2018
Variation: August 19th, 2010
Gene Model: January 4th, 2021
60 days agoemp6 empty pericarp6: mutant causes early arrest in grain development leading to an empty pericarp phenotype.similar to Arabidopsis ubiquitin thiolesterase
2.07
GRMZM2G048392
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: July 4th, 2014
Variation: February 24th, 2017
Gene Model: February 24th, 2017
60 days agoabi47 ABI3-VP1-transcription factor 47: Grimault named this locus ZmAFL6 by homology to Arabidopsis, 2015Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models
4.08
GRMZM2G125596
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: July 29th, 2015
Gene Model: June 10th, 2018
60 days agotar1 tryptophan aminotransferase related1:
6.05
GRMZM2G127160
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: April 30th, 2011
Gene Model: June 4th, 2012
60 days agode30 defective endosperm B30: dominant De*-B30 has opaque, high lysine endosperm
7.01 - 7.02
AF546188.1_FG007
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: September 15th, 2014
Gene Model: September 14th, 2014
60 days agoemb18 embryo specific18: embryo development arrested at the transition stage from proembryo; embryo usually necrotic
9.03
GRMZM2G136559
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 9th, 2013
Variation: August 22nd, 2013
Gene Model: March 9th, 2013
60 days agorrb1 related to retinoblastoma1: nuclear, low copy, ubiquitous expression; phosphorylation dependent role in cell division
2.09
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: May 19th, 2005
60 days agosmk2 small kernel2: mutants are recessive embryo-lethal small kernel
4.10
GRMZM2G023528
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: April 14th, 2017
Variation: April 14th, 2017
Gene Model: April 14th, 2017
60 days agode18 defective18: Defective kernel: seed weight less than half of normal (B37) (Torti et al. 1984)
10.03
GRMZM2G091819
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 18th, 2018
Variation: January 21st, 2016
Gene Model: September 11th, 2012
60 days agorgh3 rough endosperm3: Mature rgh3 seeds show a rough, etched, or pitted endosperm surface as well as a reduced seed size
 
GRMZM2G128228
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 29th, 2011
Variation: December 29th, 2011
Gene Model: April 29th, 2013
60 days agoppr2263 pentatricopeptide repeat protein2263: encodes a protein required for RNA editing in mitochondrial nad5 and cob transcript (Sosso et al 2012)
 
AC215198.3_FG002
Dai, DW et al. 2021. Mol Breed 41:2   Loc_Os06g08660 (MSU/TIGR)
Os06g0185800 (Gramene)
Reference: January 4th, 2021
Gene Product: February 15th, 2012
Variation: February 16th, 2012
Gene Model: February 15th, 2012
60 days agoemb17 embryo defective17: in mutants, embryogenesis is arrested at or before transition stage; encodes plastid initiation factor 3
 
GRMZM2G119691
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 8th, 2013
Variation: August 15th, 2013
Gene Model: March 8th, 2013
60 days agoemp5 empty pericarp5: encodes a mitochondrion-targeted DYW subgroup pentatricopeptide repeat (PPR) protein; mutant has empty pericarp phenotype
 
GRMZM2G060536
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: March 12th, 2013
Gene Model: March 11th, 2013
60 days agoemb14 embryo defective 14: mutant has defective embryo; unlinked suppressor(s) give an albino seedling phenotype
 
GRMZM2G384293
Dai, DW et al. 2021. Mol Breed 41:2   AT3G47450 (TAIR)
LOC_Os02g01440 (MSU/TIGR)
Reference: January 4th, 2021
Gene Product: July 5th, 2013
Variation: October 13th, 2015
Gene Model: July 1st, 2013
60 days agofl4 floury4: semi-dominant opaque mutant that produces small, misshapen, and aggregated protein bodies; encodes member of 19kD α-zein z1A-1 subfamily
 
GRMZM2G353272
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: April 9th, 2014
Variation: April 8th, 2014
Gene Model: April 9th, 2014
60 days agosmk1 small kernel1: encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing
 
GRMZM2G030148
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 14th, 2014
Variation: June 14th, 2014
Gene Model: June 14th, 2014
60 days agocyp18 cytochrome P-450 18: A CYP78A ortholog of rice giant embryo2
 
GRMZM2G470442
Dai, DW et al. 2021. Mol Breed 41:2   LOC_Os03g30420 (MSU/TIGR) Reference: January 4th, 2021
Gene Product: August 18th, 2015
Gene Model: August 18th, 2015
60 days agoemp7 empty pericarp7: mutant confers an embryo-lethal phenotype
 
GRMZM2G041231
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: August 26th, 2015
Variation: August 26th, 2015
Gene Model: August 26th, 2015
60 days agoreas1 ribosome export associated1: Encodes an AAA-ATPase that controls 60S ribosome export from the nucleus to the cytoplasm after ribosome maturation; mutants have a defective kernel phenotype.
 
GRMZM2G092001
Dai, DW et al. 2021. Mol Breed 41:2   AT1G67120 (TAIR) Reference: January 4th, 2021
Gene Product: December 12th, 2015
Variation: December 12th, 2015
Gene Model: December 10th, 2015
60 days agoemp17 empty pericarp17: mutants abolish the C-to-U editing of ccmB-43 and rps4-335 sites in mitochondria
 
AC212684.3_FG012
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: January 26th, 2017
60 days agodek36 defective kernel36: mutant kernels have a small and collapsed appearance at maturity, with a drastic size reduction in both embryo and endosperm; encodes an E+ subgroup PPR protein
 
GRMZM5G892151
Dai, DW et al. 2021. Mol Breed 41:2   At4g21300 (TAIR) Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: March 13th, 2017
Gene Model: March 13th, 2017
60 days agoemp10 empty pericarp10: mutant effects the cis-splicing of nad2 intron 1 and seed development
 
GRMZM2G078416
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: March 28th, 2017
60 days agodek38 defective kernel38: mutants are embryonic lethal, has a defective basal endosperm transfer (BETL) layer, and results in a smaller seed with highly underdeveloped endosperm.
 
GRMZM2G048851
Dai, DW et al. 2021. Mol Breed 41:2   At2g39910 (TAIR) Reference: January 4th, 2021
Gene Product: June 2nd, 2017
Variation: May 2nd, 2017
Gene Model: May 2nd, 2017
60 days agodek37 defective kernel37: mutant seeds are small and misshapen; seedlings don't survive after emergence of the second leaf; encodes a P-type PPR protein that participates in cis-splicing of mitochondrial nad2 intron 1
 
GRMZM2G021319
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: January 6th, 2018
Gene Model: January 6th, 2018
60 days agoppr78 pentatricopeptide repeat78: mutants have small kernels; nad5 mature mRNA accumulation is dramatically reduced
 
GRMZM2G070381
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: September 25th, 2017
Gene Model: September 25th, 2017
60 days agodek39 defective kernel39: mutant has flatter appearance and relatively smaller size in endosperms and embryos; encodes a PPR protein of the E subfamily
 
GRMZM2G345128
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: October 6th, 2017
Gene Model: October 6th, 2017
60 days agoemp11 empty pericarp11: encodes a P-type pentatricopeptide repeat (PPR) protein
 
GRMZM2G353301
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: October 6th, 2017
Gene Model: October 6th, 2017
60 days agosmr4 siamese-related4:
 
GRMZM2G019353
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 8th, 2017
Gene Model: March 14th, 2018
60 days agoemp108 empty pericarp108: essential for kernel development; required for splicing of multiple introns and complex I biogenesis
 
GRMZM2G388778
Dai, DW et al. 2021. Mol Breed 41:2   AT5G18390 (TAIR)
LOC_Os08g41380 (MSU/TIGR)
Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: September 1st, 2018
Gene Model: July 13th, 2018
60 days agoemp18 empty pericarp18: mutants have an embryo-lethal phenotype; functions in mitochondrial atp6 and cox2 transcript editing
 
GRMZM2G471348
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: September 1st, 2018
Gene Model: September 1st, 2018
60 days agoocd1 oxalyl-CoA decarboxylase1: Mutants have an opaque phenotype and caused dramatic alterations in the metabolome in the endosperm
 
GRMZM2G175171
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 12th, 2018
Variation: September 12th, 2018
Gene Model: September 12th, 2018
60 days agoemp12 empty pericarp12: mutant severely arrests embryo and endosperm development, causing embryo lethality
 
GRMZM2G023071
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: December 8th, 2018
Gene Model: December 8th, 2018
60 days agoppr27 pentatricopeptide repeat protein27:
 
GRMZM2G353195
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Gene Model: December 21st, 2018
60 days agodek41 defective kernel41: mutations cause reduced splicing efficiency of mitochondrial nad4 intron 3, resulting in severely reduced complex I assembly and NADH dehydrogenase activity
 
GRMZM2G127015
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: May 24th, 2019
Gene Model: April 25th, 2019
60 days agodek44 defective kernel44: encodes mitochondrial ribosomal protein L9
 
GRMZM5G866627
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 11th, 2019
Variation: June 11th, 2019
Gene Model: June 11th, 2019
60 days agodek40 defective kernel40: encodes a cytosol-localized proteasome biogenesis-associated chaperone (PBAC4)
 
GRMZM2G019538
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 13th, 2019
Variation: June 13th, 2019
Gene Model: June 13th, 2019
60 days agosmk6 small kernel6: encodes a mitochondrion-localized PPR protein that mediates the C-to-U editing at multiple sites
 
GRMZM2G010046
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 14th, 2019
Gene Model: June 14th, 2019
60 days agoemp21 empty pericarp21:
 
GRMZM5G849971
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: August 3rd, 2019
Gene Model: August 3rd, 2019
60 days agodek140 defective kernel140: mutant abolished the C-to-U editing of cox3-314, nad2-26 and nad5-1916 leads to accumulated reactive oxygen species and promoted programmed cell death in endosperm cells due to the dysfunction of mitochondrial complex I and IV
 
GRMZM2G304965
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: September 7th, 2019
Gene Model: September 7th, 2019
60 days agovps29 vacuolar protein sorting29: Involved in kernel morphology variance
 
GRMZM2G068489
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Variation: September 26th, 2019
Gene Model: September 26th, 2019
60 days agoppr20 pentatricopeptide repeat 20: mutants arrest maize seed development; display slow embryo and endosperm development
 
GRMZM5G818978
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: November 2nd, 2019
Gene Model: November 2nd, 2019
60 days agoppr101 pentatricopeptide repeat potein101: Loss-of-function mutation impairs seed development
 
GRMZM2G023999
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 3rd, 2020
Gene Model: June 3rd, 2020
60 days agoppr231 pentatricopeptide repeat potein231: Loss-of-function mutation impairs seed development
 
GRMZM2G018757
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 3rd, 2020
Gene Model: June 3rd, 2020
60 days agoppr18 pentatricopeptide repeat protein18: mutants impair the splicing of nad4 intron 1
 
GRMZM2G438456
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 5th, 2020
Gene Model: June 5th, 2020
60 days agoppr14 pentatricopeptide repeat protein14: null mutations severely arrest the embryo and endosperm development, causing an empty pericarp phenotype
 
GRMZM2G106384
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 12th, 2020
Gene Model: June 12th, 2020
60 days agoemp32 empty pericarp32: mutants have an empty pericarp phenotype
 
GRMZM2G089959
Dai, DW et al. 2021. Mol Breed 41:2   At5g57250 (TAIR) Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: September 17th, 2020
Gene Model: June 12th, 2020
60 days agodek46 defective kernel46: mutant kernels are small with shrunken pericarps after maturation
 
GRMZM2G456114
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: June 22nd, 2020
Gene Model: June 20th, 2020
60 days agosmk7 small kernel7: mutants have small kernels, but normal composition of storage proteins
 
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: June 26th, 2020
Variation: June 26th, 2020
60 days agoysl2 yellow stripe-like transporter2: mutants have small/collapsed kernels
 
GRMZM2G135291
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: September 1st, 2003
Variation: July 21st, 2020
Gene Model: July 9th, 2020
60 days agoppr170 pentatricopeptide repeat protein170: mutants have a defective/collapsed kernel phenotype
 
GRMZM2G480380
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: July 27th, 2020
Gene Model: July 27th, 2020
60 days agoppr73 pentatricopeptide repeat protein73:
 
GRMZM2G389645
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: January 4th, 2021
Gene Model: January 4th, 2021
60 days agoppr405 pentatricopeptide repeat protein405: mutants exhibit embryo lethality and albinism
7.04
GRMZM2G158452
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: December 27th, 2016
Variation: July 29th, 2019
Gene Model: July 29th, 2019
60 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
GRMZM2G398650
Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: June 7th, 2012
60 days agolem1 lethal embryo mutant1: lethal embryo, quasi-normal endosperm; single copy genomic sequence; green fluorescent protein fusion constructs localize to plastid
1.10
   Dai, DW et al. 2021. Mol Breed 41:2     Reference: January 4th, 2021
Gene Product: March 29th, 2004
Variation: January 4th, 2013
62 days agomha2 plasma-membrane H+ATPase2: cDNA sequence similar to plant plasma-membrane [H+]-ATPase and distinct from mha1
2.02
   Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: September 1st, 2003
Variation: May 13th, 2009
62 days agocry2 cryptochrome2:
2.04
GRMZM2G049549
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: August 31st, 2018
Variation: September 5th, 2014
Gene Model: September 5th, 2014
62 days agomch1 maize CRY1 homolog1: Homolog to yeast 40S ribosomal protein S14 gene family (cDNA probe)
 
GRMZM5G805627
Li, WQ et al. 2021. Plant Biotechnol J pp.doi: 10.1111/pbi.13541     Reference: January 2nd, 2021
Gene Product: September 1st, 2003
Variation: October 14th, 2010
Gene Model: August 31st, 2018
62 days agohak14 potassium high-affinity transporter14:
7.03
GRMZM2G139931
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: March 12th, 2020
Variation: September 1st, 2003
Gene Model: September 10th, 2018
62 days agogpb1 glyceraldehyde phosphate dehydrogenase B1: leaf cDNA csu152 similar to Arabidopsis GapB
1.01
GRMZM5G845611
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: September 1st, 2003
Variation: April 18th, 2006
Gene Model: April 12th, 2013
62 days agophyA1 phytochromeA1: red/far red light signal receptor; major phytochrome A transcript in seedling leaf blade, sheath and mesocotyl under dark light conditions; is greatly reduced in white or red light. See also phyA2, phyB1, phyB2, phyC1, phyC2.
1.10
GRMZM2G157727
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: June 30th, 2009
Variation: September 25th, 2007
Gene Model: August 13th, 2014
62 days agophyA2 phytochromeA2: red/far red light signal receptor; minor phytochrome A trancript in dark grown seedling leaf blade, sheath, mesocotyl. See also phyA1, phyB1, phyB2, phyC1, phyC2
5.01
GRMZM2G181028
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: June 30th, 2009
Variation: September 1st, 2003
Gene Model: August 13th, 2014
62 days agosweet4b sugars will eventually be exported transporter4b:
5.04
GRMZM2G144581
Gao, ZF et al. 2020. Genomics, Proteomics & Bioinformatics doi: 10.1016/j.gpb.2020.12.004     Reference: January 2nd, 2021
Gene Product: No