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CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The most recent updates can be found on our curation site or by clicking the Most Recent Data option in the menu below.


         Recommended Genes

Most recent data | Six months | One year | All time

New or updated genes since one year ago. The cutoff date is October 19th, 2016

Last UpdateGeneFull Name : DescriptionChromosome
or Bin		Gene
Model		Recent ReferenceOrthologsUpdate information
2 days agoafd1 absence of first division1: male and female sterility; early meiosis
6.07
 GRMZM2G059037
 Liu, Y et al. 2017. Plant J pp.doi: 10.1111/tpj.13748   AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene) 		Reference: October 17th, 2017
Gene Product: July 30th, 2009
Variation: August 11th, 2011
Gene Model: July 14th, 2011
2 days agosgo1 shugoshin centromeric cohesion1: male and female sterile; meiosis; centromere cohesion; segregation of sister chromatids.
7.02
 GRMZM2G074082
 Liu, Y et al. 2017. Plant J pp.doi: 10.1111/tpj.13748     Reference: October 17th, 2017
Gene Product: July 29th, 2009
Variation: August 13th, 2011
Gene Model: July 14th, 2011
3 days agomop1 mediator of paramutation1: recessive changes B' phenotype to dark, similar to B1-I
2.04
 GRMZM2G042443
 Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: August 8th, 2006
Variation: August 8th, 2006
Gene Model: April 24th, 2013
Recommended by Ed Coe:
January 8th, 2008
3 days agopsei2 cystatin2: cDNA expressed in E. coli inhibits cysteine proteinases; sequence and gene product activity distinct from psei1
8.08
    Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: April 21st, 2008
Variation: January 15th, 2015
3 days agob1 colored plant1: dominant B1 plants have anthocyanin in major plant tissues; some alleles affect aleurone and embryo color; regulates flavonoid enzymes; SSR umc1776
2.03
 GRMZM2G172795
 Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: October 13th, 2010
Variation: February 14th, 2013
Gene Model: September 22nd, 2011
3 days agolg2 liguleless2: like lg1, less extreme
3.06
    Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: August 22nd, 2014
Variation: August 20th, 2014
3 days agosu1 sugary1: endosperm wrinkled and translucent when dry; starch debranching enzyme I absent in developing endosperm, phytoglycogen but no debranching enzyme in germinating seeds; su1-am sugary-amylaceous; su1-st recessive starchy; application: the "sweet corn" gene - recessive kernels are creamy-sweet at milk stage
4.05
    Shuler, S et al. 2017. Crop Sci 56:3068-3074     Reference: October 16th, 2017
Gene Product: April 21st, 2016
Variation: June 6th, 2016
3 days agormr6 required to maintain repression6: Recessive rmr6 plants show reversions of paramutant pl1 and r1recessive changes B' phenotype to dark; like mop1
1.06
 GRMZM2G007681
 Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: March 27th, 2013
Variation: March 28th, 2013
Gene Model: March 27th, 2013
3 days agochn2 chitinase2: acidic chitinase I, based on cDNA sequence similarity; Southern blots suggest multiple copies
6.01
    Dowd, P et al. 2017. Agri Gene. doi: 10.1016/j.aggene.2017.10.001     Reference: October 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agocta1 chitinase A1: cDNA sequence corresponds to peptide sequence of maize 28kDa chitinase A
2.04
    Dowd, P et al. 2017. Agri Gene. doi: 10.1016/j.aggene.2017.10.001     Reference: October 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
3 days agomaf1 MFP1 attachment factor1: cDNA
 
 GRMZM2G479245
 Forestan, C et al. 2017. BMC Plant Biology 17:161     Reference: October 16th, 2017
Gene Product: September 1st, 2003
Gene Model: June 3rd, 2017
6 days agovde1 violaxanthin de-epoxidase1: Encodes violaxanthin de-epoxidase. Based on sequence similarity to Arabiodopsis gene.
 
 GRMZM2G027219
 Chen, L et al. 2017. Plant Physiol doi: 10.1104/pp.17.00638     Reference: October 13th, 2017
Gene Product: December 13th, 2011
Gene Model: April 9th, 2013
7 days agoccs1 C-type cytochrome synthesis protein1: Ortholog of CCS1. Required for cytb6f assembly. (A. Barkan, 2015)ortholog of Arabidopsis CCS1. Required for cytb6f assembly
1.10
 GRMZM2G038301
 Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: October 12th, 2017
Gene Model: October 12th, 2017
7 days agorpd3 RPD3 histone deacetylase homolog: cDNA complements yeast rpd3, multiple copy, SSR umc1173.
4.09
 GRMZM2G172883
 Rossi, V et al. 2007. Plant Cell 19:1145-62     Reference: October 12th, 2017
Gene Product: June 24th, 2005
Variation: November 11th, 2014
Gene Model: November 6th, 2014
7 days agohdt104 histone deacetylase 104:
 
 GRMZM5G898314
 Garcia-Aguilar, M; Michaud, C; LeBlanc, O; Grimanelli, D. 2010. Plant Cell. 22:3249-3267     Reference: February 9th, 2011
Gene Product: June 24th, 2005
Gene Model: October 12th, 2017
9 days agoaprl1 adenosine 5'-phosphosulfate reductase-like1:
7.03
 AC189750.4_FG004
 Planta, JR et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1714805114     Reference: October 9th, 2017
Gene Product: October 10th, 2017
Variation: January 13th, 2016
Gene Model: December 18th, 2015
9 days agoaprl2 adenosine 5'-phosphosulfate reductase-like2:
2.07
 GRMZM2G087254
 Planta, JR et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1714805114     Reference: October 9th, 2017
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: December 18th, 2015
9 days agoaprl3 adenosine 5'-phosphosulfate reductase-like3:
4.08
 GRMZM2G042582
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 31st, 2015
Gene Model: December 18th, 2015
9 days agoaprl4 adenosine 5'-phosphosulfate reductase-like4:
5.07
 GRMZM2G159535
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: December 18th, 2015
9 days agoaprl5 adenosine 5'-phosphosulfate reductase-like5:
1.07
 GRMZM2G085249
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: December 18th, 2015
9 days agoaprl7 adenosine 5'-phosphosulfate reductase-like7:
3.05
 GRMZM2G155073
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 30th, 2015
Gene Model: December 18th, 2015
9 days agoaprl8 adenosine 5'-phosphosulfate reductase-like8:
1.11
 GRMZM2G046231
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: December 18th, 2015
9 days agoaprl9 adenosine 5'-phosphosulfate reductase-like9:
5.01
 GRMZM2G025248
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: January 5th, 2016
Gene Model: December 18th, 2015
9 days agoaprl6 adenosine 5'-phosphosulfate reductase6: member of protein disulfide isomerase family involved in protein folding, but having putative nonisomerase-like activity
10.03
 GRMZM2G141848
 Houston, N et al. 2005. Plant Physiol 137: 762-778     Reference: February 10th, 2009
Gene Product: October 10th, 2017
Variation: December 23rd, 2015
Gene Model: January 24th, 2015
10 days agocg1 corngrass1: semidominant Cg1 plants have narrow leaves, extreme tilleringCg1 encodes two tandem miR156 genes that are overexpressed in the meristem and lateral organs. George Chuck, 2007
3.02
 GRMZM2G022489
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: June 17th, 2016
Variation: August 25th, 2011
Gene Model: April 5th, 2013
Recommended by George Chuck:
September 25th, 2007
10 days agostk2 serine-threonine kinase2: Sequence orthologous to rice stk2, in maize BAC contig overlapping b0178I03 and b0004G18 (Alleman 2006)mutants have reduced pollen transmission
2.04
 GRMZM2G179268
 Huang, JT et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300358     Reference: October 9th, 2017
Gene Product: May 13th, 2014
Variation: October 9th, 2017
Gene Model: January 9th, 2017
Recommended by Ed Coe:
May 1st, 2007
10 days agopcna2 proliferating cell nuclear antigen2: a cell cycle gene regulated by tb1
4.07
 GRMZM2G108712
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: September 1st, 2003
Variation: August 23rd, 2014
Gene Model: August 23rd, 2014
Recommended by Ed Coe:
January 8th, 2008
10 days agogt1 grassy tillers1: numerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialismputative transcription factor that reduces branching, and is induced by shade
1.04
 GRMZM2G005624
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
10 days agoo1 opaque endosperm1: endosperm starch soft, opaque
4.08 - 4.08
 GRMZM2G449909
 Jia, SG et al. 2017. Methods in Molecular Biology 1676:97-108     Reference: October 9th, 2017
Gene Product: September 1st, 2003
Variation: October 9th, 2017
Gene Model: August 28th, 2012
10 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
    Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
10 days agotu1 tunicate1: dominant Tu1 ears develop long glumes enclosing individual kernels; tassels develop large, coarse glumes and sex reversal; both inflorescences become grossly vegetative and sterile in homozygotes
4.08 - 4.08
 GRMZM2G370777
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: June 12th, 2012
Variation: February 3rd, 2011
Gene Model: May 9th, 2012
10 days agonot1 neighbor of tga1: compared to tga1, expressed much higher in maize than teosinte; INDEL probe (Preston et al 2011)
 
 AC233751.1_FG002
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
10 days agotga1 teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte
4.05
 GRMZM2G101511
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
10 days agophyB1 phytochromeB1: phyB1 mutants have elongated mesocotyl under red light. Double mutant with phyB2 is pale, narrow with elongated leaf blades, elongated internodes, less anthocyanin in sheath tissues, and earlier flowering time.
1.03
    Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: October 24th, 2007
Variation: February 1st, 2015
10 days agozap1 zea apetala homolog1:
2.10
    Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Variation: February 2nd, 2011
10 days agozag1 Zea AGAMOUS homolog1: amino acid sequence, deduced from cDNA to inflorescence mRNA, 61% identical to Arabidopsis floral homeotic gene protein AG1; expression strong in female inflorescence; possibly pt1; SSR umc1187
6.05
    Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: September 1st, 2003
Variation: January 2nd, 2015
10 days agozag2 Zea AGAMOUS homolog2: amino acid sequence, deduced from cDNA sequence, has 49% identity to Arabidopsis, floral homeotic gene product; expression restricted to female inflorescence; near ts4
3.05 - 3.05
    Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: April 1st, 2011
Variation: October 22nd, 2014
10 days agomcm2 minichromosome maintenance2: a cell cycle gene regulated by tb1
3.05
 GRMZM2G112074
 Studer, AJ et al. 2017. Genetics 207:755-765   AT4G02060 (TAIR) Reference: October 9th, 2017
Gene Product: August 2nd, 2017
Variation: July 31st, 2017
Gene Model: July 30th, 2017
10 days agoyab12 C2C2-YABBY-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
 GRMZM2G167824
 Studer, AJ et al. 2017. Genetics 207:755-765     Reference: October 9th, 2017
Gene Product: October 16th, 2015
Gene Model: July 3rd, 2012
10 days agostk1 serine threonine kinase1: mutants have reduced pollen transmission
9.02
    Huang, JT et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300358     Reference: October 9th, 2017
Gene Product: May 13th, 2014
Variation: October 9th, 2017
12 days agoacm1 accomplice1:
 
 GRMZM2G175065
 Lisch, D. 2015. Microbiol Spectr. pp.doi: 10.1128/microbiolspec.MDNA3-0032-2014     Reference: June 25th, 2015
Variation: October 7th, 2017
Gene Model: October 7th, 2017
12 days agonlp15 NLP-transcription factor 15: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
 GRMZM2G042278
 Cao, HR et al. 2017. Frontiers Plant Sci pp.doi: 10.3389/fpls.2017.01703     Reference: October 7th, 2017
Variation: March 31st, 2005
Gene Model: October 7th, 2017
13 days agots4 tasselseed4: encodes miRNA that targets ts6 and sid1; tassel compact silky mass, upright, with pistillate and staminate florets; ear silky and proliferated
3.05 - 3.05
    Xu, DY et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.09.016     Reference: October 6th, 2017
Gene Product: June 17th, 2016
Variation: October 17th, 2014
Recommended by George Chuck:
September 25th, 2007
13 days agogl15 glossy15: glossy leaf surface expressed after 3rd leaf (aka gl4)
9.03
    Xu, DY et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.09.016     Reference: October 6th, 2017
Variation: October 5th, 2012
13 days agodek39 defective kernel39: mutant has flatter appearance and relatively smaller size in endosperms and embryos; encodes a PPR protein of the E subfamily
 
 GRMZM2G345128
 Li, XJ et al. 2017. J Integr Plant Biol pp.doi: 10.1111/jipb.12602     Reference: October 6th, 2017
Gene Product: December 27th, 2016
Variation: October 6th, 2017
Gene Model: October 6th, 2017
13 days agoemp11 empty pericarp11: encodes a P-type pentatricopeptide repeat (PPR) protein
 
 GRMZM2G353301
 Ren, XM et al. 2017. J Exp Bot     Reference: October 6th, 2017
Gene Product: December 27th, 2016
Variation: October 6th, 2017
Gene Model: October 6th, 2017
15 days agoms23 male sterile23: pollen mother cells degenerate
8.01 - 8.02
 GRMZM2G021276
 Liu, YM et al. 2017. Biol Open doi: 10.1242/bio.026393     Reference: October 4th, 2017
Gene Product: September 14th, 2016
Variation: December 4th, 2016
Gene Model: December 4th, 2016
15 days agohggt1 homogentisate geranylgeranyl transferase1: vitamin E synthesis; contributes to variation in levels of tocotrienol (Lipka et al 2013)
 
 GRMZM2G173358
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Gene Product: June 26th, 2013
Gene Model: June 26th, 2013
15 days agodxs3 deoxy xylulose synthase3:
 
 GRMZM2G173641
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
15 days agovte4 vitamin E synthesis4:
5.06
 GRMZM2G173358
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Gene Product: June 26th, 2013
Gene Model: June 26th, 2013
15 days agodxs2 deoxy xylulose synthase 2: root specific; function inferred from sequence and expression pattern comparison with Medicago trunculata genes
9.03
 GRMZM2G493395
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
15 days agohppd1 4-hydroxyphenylpyruvate dioxygenase 1:
5.04
 GRMZM2G088396
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Gene Product: June 2nd, 2005
Variation: September 28th, 2010
Gene Model: July 28th, 2016
15 days agoapg1 albino or pale green mutant1: MPBQ/MSBQ methyltransferase involved in plastoquinone synthesis. (A. Barkan, 2015)ortholog of Arabidopsis At3g63410, which encodes MPBQ/MSBQ methyltransferase involved in plastoquinone synthesis (Belcher et al 2015)
1.05
 GRMZM2G082998
 Diepenbrock, CH et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00475     Reference: October 4th, 2017
Variation: December 30th, 2015
Gene Model: February 17th, 2015
17 days agotar1 tryptophan aminotransferase related1:
6.05
 GRMZM2G127160
 Zhang, MS et al. 2017. Genes Genom. DOI: 10.1007/s13258-017-0613-9     Reference: October 2nd, 2017
Gene Product: April 30th, 2011
Gene Model: June 4th, 2012
17 days agode18 defective18: Defective kernel: seed weight less than half of normal (B37) (Torti et al. 1984)
10.03
 GRMZM2G091819
 Zhang, MS et al. 2017. Genes Genom. DOI: 10.1007/s13258-017-0613-9     Reference: October 2nd, 2017
Gene Product: September 12th, 2012
Variation: January 21st, 2016
Gene Model: September 11th, 2012
18 days agoprp3 pathogenesis-related protein3:
4.02
 GRMZM2G117989
 Bravo, J; Campo, S; Murillo, I; Coca, M; Segundo, BS. 2003. Plant Mol Biol. 52:745-749     Reference: October 15th, 2003
Gene Product: October 1st, 2017
Gene Model: December 24th, 2015
18 days agoprp5 pathogenesis related protein5:
1.06
 GRMZM2G402631
 Ray, S et al. 2016. Plant Physiol 171:694-706     Reference: July 14th, 2016
Gene Product: October 1st, 2017
Variation: August 20th, 2011
Gene Model: October 30th, 2015
18 days agoprp7 pathogenesis-related protein7:
1.03
 GRMZM2G112524
 Xie, Y-R et al. 2010. J Plant Physiol 167:121-130     Reference: October 1st, 2017
Gene Product: October 1st, 2017
Gene Model: September 30th, 2017
18 days agoprp4 pathogenesis related protein4:
7.00
 GRMZM2G465226
 Christensen, SA et al. 2015. Proc Natl Acad Sci, USA 112:11407-11412     Reference: October 30th, 2015
Gene Product: October 1st, 2017
Variation: August 29th, 2011
Gene Model: November 20th, 2014
18 days agoprp6 pathogenesis-related protein6: encoded protein exerted broad spectrum antifungal activity
 
 GRMZM2G112488
 Xie, Y-R et al. 2010. J Plant Physiol 167:121-130     Reference: October 1st, 2017
Gene Product: October 1st, 2017
Gene Model: September 30th, 2017
21 days agotru1 tassels replace upper ears1: upper ear branches tassel-like, tillers bear ears
3.04 - 3.10
 GRMZM2G039867
 Dong, Z et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1714960114     Reference: September 28th, 2017
Gene Product: December 17th, 2013
Variation: December 18th, 2013
Gene Model: December 17th, 2013
23 days agoao3 aldehyde oxidase3: associated with ABA levels in silks of water-stressed plants (Setter et al 2011)
1.11
 GRMZM2G019799
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: February 5th, 2013
Gene Model: February 5th, 2013
23 days agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
 GRMZM2G012966
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Variation: October 3rd, 2011
Gene Model: October 3rd, 2011
23 days agops1 pink scutellum1: (aka vp7, lyc1, lycB) some alleles viviparous; endosperm and scutellum pink, seedling white with pink flush
5.04 - 5.04
    Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Variation: March 30th, 2011
23 days agovp9 viviparous9: (was y7, z1, zds1) like vp2; vp9-4889 dormant, pale aleurone, pale green seedling
7.02
 GRMZM2G454952
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 13th, 2011
Variation: March 25th, 2017
Gene Model: March 8th, 2013
23 days agoy1 yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb)
6.01
 GRMZM2G300348
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 14th, 2011
Variation: August 26th, 2014
Gene Model: September 22nd, 2011
23 days agoaps1 ATP sulfurylase1:
1.10
 GRMZM2G149952
 Bolchi, A et al. 1999. Plant Mol Biol 39:527-537     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 26th, 2017
Gene Model: September 26th, 2017
23 days agonced3 nine-cis-epoxycarotenoid dioxygenase3:
 
 GRMZM5G858784
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: September 20th, 2012
Gene Model: September 20th, 2012
23 days agohyd3 hydroxylase3: beta-carotene hydroxylase
 
 GRMZM2G152135
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: April 9th, 2013
23 days agohyd4 hydroxylase4: beta-carotene hydroxylase
 
 GRMZM2G164318
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: April 9th, 2013
23 days agohds1 hydroxymethylbutenyl diphosphate synthase1:
 
 GRMZM2G137409
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Gene Model: December 10th, 2011
23 days agohyd7 hydroxylase7: beta-carotene hydroxylase
 
 GRMZM2G163683
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 13th, 2011
Variation: February 17th, 2012
Gene Model: April 9th, 2013
23 days agocrti2 carotene isomerase2: encodes carotene isomerase2
 
 GRMZM2G106531
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
23 days agoggps2 geranylgeranyl pyrophosphate synthase2: part of multigene family encoding geranylgeranyl diphosphate synthase
 
 GRMZM2G102550
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
23 days agoippi3 isopentenyl pyrophosphate isomerase3: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
 GRMZM2G145029
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
23 days agocyp13 cytochrome P450 13: encodes CYP97A
 
 GRMZM5G837869
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: April 8th, 2013
Variation: July 8th, 2017
Gene Model: April 8th, 2013
23 days agocyp15 cytochrome P450 15: encodes CYP97B
 
 GRMZM2G010221
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: April 29th, 2013
Gene Model: April 29th, 2013
23 days agonced4 nine-cis-epoxycarotenoid dioxygenase4:
 
 GRMZM2G408158
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
23 days agonced8 nine-cis-epoxycarotenoid dioxygenase8:
 
 GRMZM2G150363
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
23 days agonced9 nine-cis-epoxycarotenoid dioxygenase9:
 
 GRMZM5G838285
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
23 days agoao4 aldehyde oxidase4:
 
 GRMZM2G141473
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
23 days agohyd8 hydroxylase8:
 
 GRMZM5G826824
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 13th, 2011
Gene Model: October 4th, 2014
23 days agoccd7 carotenoid cleavage dioxygenase7:
 
 GRMZM2G158657
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8   AT2G44990 (TAIR) Reference: September 26th, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
23 days agomecs2 methyl erythritol cyclodiphosphate synthase2:
 
 AC209374.4_FG002
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
23 days agoggh1 geranylgeranyl hydrogenase1:
 
 GRMZM2G105644
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
23 days agoggh2 geranylgeranyl hydrogenase2:
 
 GRMZM2G419111
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
23 days agodxs1 deoxy xylulose synthase 1: leaf specific; function inferred from Medicago trunculata gene sequence and expression pattern (Walter 2002)
6.05
 GRMZM2G137151
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: August 17th, 2004
Variation: June 20th, 2012
Gene Model: December 9th, 2011
23 days agodxr1 deoxy xylulose reductoisomerase1: enzyme catalyzes the first committed step of the plastidial pathway to apocarotenoids during mycorrhizal establishment
3.04
 GRMZM2G056975
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: December 10th, 2011
Variation: May 11th, 2005
Gene Model: December 9th, 2011
23 days agoao1 aldehyde oxidase1: functionally cloned (Sekimoto et al 1997)
1.11
 GRMZM2G141535
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: May 2nd, 2012
Variation: May 30th, 2012
Gene Model: October 4th, 2014
23 days agovp14 viviparous14: viviparous; yellow endosperm; abscisic acid biosynthesis; SSR umc1218
1.08
 GRMZM2G014392
 Venado, R et al. 2017. Mol Breed pp.doi: 10.1007/s11032-017-0723-8     Reference: September 26th, 2017
Gene Product: September 20th, 2012
Variation: June 25th, 2007
Gene Model: May 13th, 2011
24 days agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
    Guan, HY et al. 2017. Plant Growth Regulation pp.DOI: 10.1007/s10725-017-0309-9     Reference: September 21st, 2017
Gene Product: October 25th, 2006
Variation: September 25th, 2017
24 days agoppr78 pentatricopeptide repeat78: mutants have small kernels; nad5 mature mRNA accumulation is dramatically reduced
 
 GRMZM2G070381
 Zhang, YF et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.09.009     Reference: September 25th, 2017
Gene Product: December 27th, 2016
Variation: September 25th, 2017
Gene Model: September 25th, 2017
24 days agonad5 (mito) NADH dehydrogenase subunit 5:
 
    Zhang, YF et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.09.009     Reference: September 25th, 2017
Gene Product: September 1st, 2003
27 days agoagpll1 ADP glucose pyrophosphorylase large subunit leaf1AGPL4:
1.10
 GRMZM2G391936
 Huang, B-Q; Hennen-Bierwagen, TA; Myers, AM. 2014. Plant Physiol. 164:596-611     Reference: October 20th, 2014
Gene Product: January 3rd, 2014
Variation: September 22nd, 2017
Gene Model: September 22nd, 2017
27 days agotps21 terpene synthase21: has a role in fungal tolerance; involved in the producation of beta-selinene and beta-costic acid
 
 GRMZM2G011151
 Ding, YZ et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00879     Reference: September 22nd, 2017
Gene Product: May 28th, 2012
Gene Model: September 22nd, 2017
29 days agoa1 anthocyaninless1: colorless aleurone, green or brown plant; brown pericarp with P1-rr
3.09
    Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: April 11th, 2013
Variation: August 25th, 2010
29 days agoa2 anthocyaninless2: like a1, but red pericarp with P1-rr
5.03
    Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 7th, 2012
Variation: September 1st, 2003
29 days agobz1 bronze1: modifies purple aleurone and plant color to pale or reddish brown; anthers yellow-fluorescent; allele bz1-m4 = sh1-bz1-m4; SSR phi017NCBI: UDPG-flavonoid 3-oxy glucosyl transferase
9.02
    Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 1st, 2003
Variation: June 25th, 2015
29 days agobz2 bronze2: like bz1; anthers not fluorescent; an1-6923 mutation includes deletion for Bz2; encodes a glutathione S-transferase conjugating anthocyanins into the vacuole
1.08
    Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 1st, 2003
Variation: March 31st, 2008
29 days agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
    Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 16th, 2015
Variation: March 27th, 2013
29 days agopr1 red aleurone1: changes purple aleurone to red; encodes flavonoid 3'-hydroxylase
5.05
 GRMZM2G025832
 Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: June 3rd, 2011
Variation: June 10th, 2011
Gene Model: September 22nd, 2011
29 days agosm2 salmon silk2: like sm1; silks salmon color with P1-rr and P1-wr, brown with P1-ww
2.07
 GRMZM2G180283
 Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
29 days agosut1 sucrose transporter1: mutant plants are deficient in leaf sucrose unloading to pholem; mature leaves hyperaccumulate carbohydrates and display leaf chlorosis with premature senescence
1.02
 GRMZM2G034302
 Julius, BT et al. 2017. Plant Cell Physiol pp.doi: 10.1093/pcp/pcx090     Reference: September 20th, 2017
Gene Product: September 14th, 2013
Variation: April 16th, 2013
Gene Model: April 16th, 2013
29 days agosut2 sucrose transporter2: mutants grow slower and have increased sugar content in leaves
3.04
 GRMZM2G307561
 Julius, BT et al. 2017. Plant Cell Physiol pp.doi: 10.1093/pcp/pcx090     Reference: September 20th, 2017
Gene Product: September 14th, 2013
Variation: February 20th, 2017
Gene Model: April 17th, 2013
29 days agofls1 flavonol synthase1: partially complements the flavonol deficiency of the Arabidopsis fls1 mutant
 
 GRMZM2G152801
 Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: October 10th, 2012
Variation: October 9th, 2012
Gene Model: October 9th, 2012
29 days agofls2 flavonol synthase2: Tightly linked tandem duplication of fls1
 
 GRMZM2G069298
 Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: October 10th, 2012
Gene Model: October 9th, 2012
29 days agotxln1 taxilin1:
 
 GRMZM2G015730
 Zhang, Nan et al. 2012. PLoS One 7:e43822     Reference: May 23rd, 2013
Gene Product: May 23rd, 2013
Gene Model: September 20th, 2017
29 days agofns1 flavone synthase1:
 
 GRMZM2G167336
 Tohge, T et al. 2017. J Exp Bot 68:4013-4028     Reference: September 20th, 2017
Gene Product: September 20th, 2017
Gene Model: May 6th, 2016
30 days agoAY110452  :
1.09
 GRMZM2G068259
     Variation: July 29th, 2004
Gene Model: September 19th, 2017
31 days agocct1 CO CO-LIKE TIMING OF CAB1 protein domain1: photoperiod response locus; confers later flowering in teosintes under longer day lengths; many maize inbred lines, including some adapted to tropical regions, have cct1 alleles insensitive to photoperiod (Hung et al 2012)
 
 GRMZM2G381691
 Li, YP et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2978-1   AT5G24930 (TAIR)
LOC_Os07g15770 (MSU/TIGR)
Os07g0261200 (Gramene) 		Reference: September 18th, 2017
Gene Product: July 17th, 2012
Variation: July 19th, 2017
Gene Model: July 17th, 2012
31 days agodgk1 diacylglycerol kinase1:
1.05
 GRMZM2G076911
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk2 diacylglycerol kinase2:
 
 GRMZM2G094452
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk3 diacylglycerol kinase3:
 
 GRMZM2G106578
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk4 diacylglycerol kinase4:
 
 GRMZM2G019562
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk5 diacylglycerol kinase5:
 
 GRMZM5G827286
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk6 diacylglycerol kinase6:
 
 GRMZM2G128214
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agodgk7 diacylglycerol kinase7:
 
 GRMZM2G062429
 Gu, YN et al. 2017. J Plant Biochem pp.DOI: 10.1007/s13562-017-0424-8     Reference: September 18th, 2017
Gene Product: September 18th, 2017
Variation: September 18th, 2017
Gene Model: September 18th, 2017
31 days agoics1 isochorismate synthase like1:
7.02
 GRMZM2G022837
   AT1G18870 (TAIR)
LOC_Os09g19734 (MSU/TIGR) 		Gene Product: January 24th, 2014
Gene Model: September 18th, 2017
33 days agoplt2 phospholipid transfer protein homolog2: amino acid sequence, deduced from coleoptile cDNA; SSR locus umc1010
3.09
    Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
33 days agoumc1318  :
10.01
 GRMZM5G898755
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Variation: September 1st, 2003
Gene Model: September 16th, 2017
33 days agoctb1 chitinase B1: cDNA sequence corresponds to protein sequence of maize chitinase B
10.04
 GRMZM2G005633
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 21st, 2015
33 days agoumc1594  :
3.09
 GRMZM2G107839
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Variation: September 1st, 2003
Gene Model: September 16th, 2017
33 days agophp20075a(gast)  : NCBI: GAST1 protein
10.01
 GRMZM2G172596
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
33 days agoplt1 phospholipid transfer protein homolog1: amino acid sequence, deduced from coleoptile cDNA, homologous to phospholipid transfer proteins
3.06
 GRMZM2G127949
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Variation: March 17th, 2015
Gene Model: March 6th, 2015
33 days agoctn4 chitinase4:
 
 GRMZM2G373106
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: September 1st, 2003
Gene Model: September 16th, 2017
33 days agoumi11 Ustilago maydis induced11:
7.00
 GRMZM2G450866
 Noonan, J et al. 2017. Int J Mol Sci 8:E1938     Reference: September 16th, 2017
Gene Product: January 12th, 2015
Variation: January 11th, 2015
Gene Model: January 11th, 2015
35 days agoxer1 xerico1: Over-expression improves water use efficiency and drought tolerance in transgenic maize plants through reduction in ABA8OX proteins stability and ABA degradation.
2.07
 GRMZM2G018070
 Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
35 days agoxer3 xerico3:
 
 GRMZM2G005840
 Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Variation: September 14th, 2017
Gene Model: September 14th, 2017
35 days agoxer2 xerico2:
 
 GRMZM2G393349
 Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
35 days agoxer4 xerico4:
 
 GRMZM2G029623
 Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: September 14th, 2017
Gene Model: September 14th, 2017
36 days agophos3 phosphate transporter3:
 
 GRMZM5G872499
 Salazar, MN. 2017. Zm00001d018445 structure   LOC_Os02g56510 (MSU/TIGR) Reference: September 13th, 2017
Gene Product: February 27th, 2016
Variation: September 13th, 2017
Gene Model: September 13th, 2017
37 days agokch6 potassium channel6:
8.03
 AC234152.1_FG007
 Philippar, K et al. 1999. Proc Natl Acad Sci, USA 96:12186-12191     Reference: October 20th, 2008
Gene Product: February 20th, 2008
Variation: April 14th, 2017
Gene Model: September 12th, 2017
37 days agokch7 potassium channel7:
 
 GRMZM2G178356
 Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: September 12th, 2017
Gene Model: September 12th, 2017
37 days agokch8 potassium channel8:
 
 GRMZM5G838773
 Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Gene Model: September 12th, 2017
37 days agokch4 potassium channel4:
3.02
 GRMZM2G093313
 Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: February 20th, 2008
Gene Model: April 22nd, 2011
37 days agokch3 potassium channel3: single copy (Southern blot), function confirmed by expression in Xenopus oocytes (Philippar 2003; Su 2005)
2.06
 GRMZM2G081666
 Gao, Y-Q et al. 2017. Plant J pp.doi: 10.1111/tpj.13712     Reference: September 12th, 2017
Gene Product: February 20th, 2008
Variation: April 22nd, 2011
Gene Model: April 22nd, 2011
38 days agonpf2 nitrate transporter/peptide transporter family2: encodes a a pH dependent non-biphasic high-affinity nitrate-specific transport protein
 
 GRMZM2G161459
 Wen, ZY et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00724   AT1G12110 (TAIR) Reference: September 11th, 2017
Gene Product: September 1st, 2003
Variation: September 11th, 2017
Gene Model: September 11th, 2017
38 days agonpf1 nitrate transporter/peptide transporter family1: encodes a low-affinity nitrate transporter with efflux activity; switches to a high-affinity chloride selective transporter, when supplied chloride.
10.03
 GRMZM2G086496
 Wen, ZY et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00724   AT1G12110 (TAIR) Reference: September 11th, 2017
Gene Product: September 1st, 2003
Variation: September 11th, 2017
Gene Model: September 11th, 2017
41 days agouce3 ubiquitin conjugating enzyme3:
1.01
 GRMZM2G070047
 Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073     Reference: September 8th, 2017
Gene Product: September 1st, 2003
Variation: February 15th, 2015
Gene Model: February 16th, 2015
41 days agoscmv1 resistance to sugarcane mosaic virus1: resistance requires dominant factors Scm1 and Scm2; resistance in various inbreds is concordant for SCMV and MDMV, yet recombinants of Scm1 occur with the NOR, whereas none were found for Mdm1 by Simcox et al. (1995)
6.00 - 6.01
 GRMZM2G014055
 Liu, Q et al. 2017. Molecular Plant 10:483-497     Reference: September 8th, 2017
Gene Product: September 1st, 2003
Variation: June 29th, 2005
Gene Model: September 7th, 2017
41 days agozag6 agamous-like6: Encodes a MADS-box transcription factor homologous to SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 that affects flowering time in Arabidopsis.
 
 GRMZM2G026223
 Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073     Reference: September 8th, 2017
Variation: June 9th, 2014
Gene Model: June 9th, 2014
41 days agobx12 benzoxazinone synthesis12:
 
 GRMZM2G023325
 Gaillard, MDP et al. 2017. New Phytol pp.doi: 10.1111/nph.14757     Reference: September 8th, 2017
Gene Product: July 8th, 2013
Variation: July 8th, 2013
Gene Model: July 8th, 2013
41 days agofnsi2 flavone synthase typeI2: Encodes a flavone synthase that is of the soluble Fe2+/2- oxoglutarate-dependent dioxygenase class
 
 GRMZM2G475380
 Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073   AT5G24530 (TAIR) Reference: September 8th, 2017
Gene Product: August 15th, 2015
Gene Model: August 14th, 2015
42 days agoabp1 auxin binding protein1: putative auxin receptor, single band in Southerns, endoplasmic reticulum and plasma membrane locales (aka axr1, aux311)Dominant Scmv1 and Scmv2 confer resistance
3.05 - 3.05
    Leng, PF, et al. 2017. Molecular Plant. 0:doi: 10.1016/j.molp.2017.07.013     Reference: September 7th, 2017
Gene Product: September 1st, 2003
Variation: August 23rd, 2017
42 days agofl3 floury3: endosperm opaque, soft; dosage effect
8.03
 GRMZM2G006585
 Li, Q et al. 2017. Plant Cell pp.doi: 10.1105/tpc.17.00576     Reference: September 7th, 2017
Gene Product: September 7th, 2017
Variation: September 7th, 2017
Gene Model: September 7th, 2017
42 days agoomt2 Caffeoyl CoA O-methyltransferase2:
9.02
 GRMZM2G099363
 Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: January 5th, 2014
Variation: May 13th, 2016
Gene Model: September 17th, 2014
42 days agoago18b argonaute18b: mutant affects length of central tassel branch
1.08
 GRMZM2G457370
 Sun, W et al. 2017. J Integr Plant Biol pp.doi: 10.1111/jipb.12596     Reference: September 7th, 2017
Gene Product: August 12th, 2016
Variation: September 7th, 2017
Gene Model: August 12th, 2016
42 days agofbxl1 F-box domain and LRR containing protein1: encodes an F-box domain and a leucine-rich-repeat domain protein
 
 GRMZM2G481291
 Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
42 days agorlk1 receptor-like protein kinase1: encodes an S-locus receptor-like protein kinase;
 
 GRMZM2G099324
 Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 1st, 2015
Variation: July 25th, 2017
Gene Model: July 25th, 2017
42 days agopipf1 Ping-Pong family plant transposase1: encodes a PIF/Ping-Pong family plant transposase
 
 GRMZM2G440198
 Yang, Q, et al. 2017. Nature Genetics. 0:doi: 10.1038/ng.3919     Reference: September 7th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
43 days agomgt10 magnesium transporter10: encodes CorA/MRS2/MGT-type magnesium transporter
 
 GRMZM2G018706
 Li, HY et al. 2017. Plant Mol Biol pp.doi: 10.1007/s11103-017-0645-1     Reference: September 6th, 2017
Gene Product: April 18th, 2016
Gene Model: April 18th, 2016
43 days agobzip127 bZIP-transcription factor 127: similar to Arabidopsis basic leucine zipper transcription factor-like protein (NCBI)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
 GRMZM2G175280
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 6th, 2017
Gene Model: September 6th, 2017
44 days agolfy1 leafy1: dominant Lfy1 plants have increased number of leaves above ear
 
    Cui, M et al. 2017. Frontiers Plant Sci 8:1437     Reference: September 5th, 2017
Variation: September 24th, 2015
44 days agowox11 WUSCHEL-related homeobox transcription factor 11:
 
    Zhao Y et al. 2009. Plant Cell. 21:736-48     Reference: September 5th, 2017
Gene Product: August 25th, 2017
47 days agowrky105 WRKY-transcription factor 105: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Cai, RH et al. 2017. Planta pp.doi: 10.1007/s00425-017-2766-9     Reference: September 2nd, 2017
Variation: September 2nd, 2017
48 days agoras11G1 ras-related protein11G1:
 
 AC197246.3_FG001
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 24th, 2011
Gene Model: September 1st, 2017
52 days agohxa102 histone acetyltransferase complex component102:
 
 GRMZM5G815323
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: August 28th, 2017
Variation: August 28th, 2017
Gene Model: August 28th, 2017
55 days agons2 narrow sheath2: embryonic transcription factor; duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: June 29th, 2005
55 days agowox9c WUSCHEL related homeobox 9c: late embryo in outer layer of suspensor through leaf 4 stage
 
 GRMZM2G409881
 Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
55 days agowox9b WUSCHEL related homeobox 9b: expressed in late embryo stages;in suspensor and also, unlike wox9c, in the shoot apical meristem (SAM)
 
 GRMZM2G031882
 Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
55 days agobnlg2057  :
1.06
 GRMZM2G017629
     Variation: September 1st, 2003
Gene Model: August 25th, 2017
55 days agobnl5.59a  : Tests with B-A translocation stocks indicated that the probe does not map to 1L, 1S, 4L, 7L, or 9L and 6L gave false positives.
1.06
 GRMZM2G113840
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 25th, 2017
55 days agoarr6 ARR-B-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Pan, QC et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00709     Reference: August 25th, 2017
Gene Product: June 30th, 2017
55 days agowox13b WUSCHEL-related homeobox transcription factor 13b:
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agowox13a WUSCHEL-related homeobox-transcription factor 13a:
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agohb122 Homeobox-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Lowe, KS et al. 2016. Plant Cell pp.10.1105/tpc.16.00124     Reference: October 1st, 2016
Gene Product: August 25th, 2017
55 days agowox3b WUSCHEL-related homeobox 3b: embryonic transcription factor of wox3 gene family, which also includes ns1, ns2, and wox3a. Expression of of all is similar, except wox3a, wox3b are expressed in the shoot apical meristem, unlike ns1 or ns2 (Nardmann et al 2007).
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agowox5a WUSCHEL-homeobox-transcription factor 5A: embryonic WUSCHEL homeobox transcription factor (Nardmann et al 2007)
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agowox5b WUSCHEL-homeobox-transcription factor 5b: embryonic transcription factor (Nardmann et al 2007)
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agohb67 Homeobox-transcription factor 67: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Somssich, M et al. 2016. Development pp.doi: 10.1242/dev.133645     Reference: September 15th, 2016
Gene Product: August 25th, 2017
55 days agowox3a WUSCHEL homeobox 3A: embryonic transcription factor; expression in embryonic leaf similar to wox3b, but distinct from ns1/ns2 also in the wox3 gene family (Nardmann et al 2007)
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: August 24th, 2017
55 days agowox2b WUSCHEL-related homeobox 2b:
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: August 25th, 2017
55 days agowox2a WUSCHEL-related homeobox 2a`: embryonic transcription factor (Nardmann et al 2007)
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
55 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: February 20th, 2015
55 days agowox9a WUSCHEL related homeobox 9a: embryonic transcription factor (Nardmann et al 2007)
 
 GRMZM2G133972
 Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: January 31st, 2011
Gene Model: December 21st, 2015
55 days agowox4 wuschel-related homeobox4: embryonic WUSCHEL homeobox transcription factor specific to hypocotyl vascular system Nardmann et al 207
 
    Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Gene Product: August 25th, 2017
Variation: May 1st, 2016
55 days agowox12a wuschel-related homeobox12A: cDNA ortholog of Arabidopsis wuschel-related homeobox gene
 
    Nardmann, J; Werr, W. 2006. Molecular biology and evolution. 23:2492-2504     Reference: November 6th, 2006
Gene Product: August 25th, 2017
55 days agoIDP1951  :
1.06
 GRMZM2G113726
     Variation: March 31st, 2005
Gene Model: August 25th, 2017
56 days agomyb63 MYB-transcription factor 63: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.08
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Variation: August 24th, 2017
56 days agomyb164 MYB-transcription factor 164: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Variation: August 24th, 2017
56 days agocenH3 centromeric histone H3:
6.06
 GRMZM2G158526
 Zhao, H et al. 2017. Chromosome Res pp.doi: 10.1007/s10577-017-9564-x     Reference: August 24th, 2017
Gene Product: December 24th, 2015
Variation: November 7th, 2012
Gene Model: October 24th, 2011
57 days agouce8 ubiquitin conjugating enzyme8:
5.03
 GRMZM2G146374
     Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
57 days agouce1 ubiquitin conjugating enzyme1: endosperm cDNA 2C06C11 (uaz102), similar to plant ubiquitin conjugating enzymes
1.08
 GRMZM2G053764
 Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: July 7th, 2017
57 days agouce6 ubiquitin conjugating enzyme6:
 
 GRMZM2G018447
     Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: July 7th, 2017
57 days agouce7 ubiquitin conjugating enzyme7:
 
 GRMZM2G053764
     Gene Product: September 1st, 2003
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
58 days agoarftf25 ARF-transcription factor 25: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.06
 GRMZM2G116557
 Chen, Q et al. 2017. Frontiers Plant Sci 8:1355     Reference: August 22nd, 2017
Variation: August 22nd, 2017
Gene Model: August 22nd, 2017
58 days agogun1 genomes uncoupled1: ortholog of Arabidopsis GUN1 (At2g31400) pentatricopeptide repeat-containing protein, chloroplastic-like
1.05
 GRMZM2G432850
   AT2G31400 (TAIR) Gene Product: December 27th, 2016
Gene Model: August 22nd, 2017
61 days agowrky111 WRKY-transcription factor 111: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Hu, SL et al. 2017. Plant Sci 263:132-141     Reference: August 19th, 2017
Gene Product: July 24th, 2017
Variation: July 24th, 2017
61 days agovt2 vanishing tassel2: inflorescence development; TRP-depenedent auxin synthesis
 
 GRMZM2G127308
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791   AT1G70560 (TAIR) Reference: August 19th, 2017
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
61 days agoyuc2 Yucca2:
 
 GRMZM2G159393
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: September 12th, 2012
61 days agoyuc4 Yucca4: up-regulated by light irradiation in the 0-1mm tip region
 
 GRMZM2G141383
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
61 days agoyuc7 yucca7:
 
 GRMZM2G480386
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
61 days agoyuc8 yucca8:
 
 GRMZM2G017193
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
61 days agoyuc9 yucca9:
 
 GRMZM2G333478
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
61 days agotar2 tryptophan aminotransferase related2:
 
 GRMZM2G066345
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 19th, 2017
61 days agotar3 tryptophan aminotransferase related3:
6.05
 GRMZM2G141810
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 22nd, 2013
61 days agoyuc5 Yucca5: transcribed in the root apex (0-5mm)
7.02
 GRMZM2G132489
 Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
62 days agozrp2 Zea root protein2: cDNA expressed in roots and stems
1.07
 GRMZM2G106980
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: July 28th, 2016
62 days agoburp8 BURP domain-containing protein-RD22-like8:
4.05
 GRMZM2G147756
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agopop1 putative organelle permease1 :
 
 GRMZM2G078154
     Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp1 BURP domain-containing protein-RD22-like1: Water deficit caused an 18-fold increase in the expression; expression is not influenced by ABA
 
 GRMZM2G446170
 Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp2 BURP domain-containing protein-RD22-like2: Water deficit caused a 1.6-fold increase in the expression; expression up-regulated by ABA.
 
 GRMZM5G800586
 Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp3 BURP domain-containing protein-RD22-like3:
 
 GRMZM2G032145
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp5 BURP domain-containing protein-RD22-like5:
 
 GRMZM2G108422
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp6 BURP domain-containing protein-RD22-like6:
 
 GRMZM2G113229
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp7 BURP domain-containing protein-RD22-like7:
 
 GRMZM2G146665
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp9 BURP domain-containing protein-RD22-like9:
 
 GRMZM2G406170
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
62 days agoburp4 BURP domain-containing protein-RD22-like4:
7.03
 GRMZM2G078779
 Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
63 days agocsu323  : similar to Arabidopsis 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1.04
 GRMZM2G036543
 Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 17th, 2017
63 days agoumc1297  : similar to Arabidopsis haloacid dehalogenase-like hydrolase domain-containing protein
1.05
 GRMZM2G086869
     Variation: October 12th, 2016
Gene Model: August 17th, 2017
64 days agoincw1 cell wall invertase1: full-length cDNA, similar to tobacco and carrot cell-wall invertase; Northerns specific to cell suspension and developing endosperm 28-32 DAP; expressed protein cross-reacts with antibodies to carrot cell-wall invertase; low copy number
5.04
    Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: May 27th, 2015
64 days agomn1 miniature seed1: small, somewhat defective kernel, fully viable; invertase reduced
2.04
    Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: April 13th, 2015
64 days agocsu452  :
1.04
 GRMZM2G077897
     Variation: September 1st, 2003
Gene Model: August 16th, 2017
64 days agoles22 lesion22: (was Les*-J2552, les29) dominant leaf lesions,early-medium timing, small size, white color; porphyria
1.04
 GRMZM2G044074
 Mei, Y et al. 2016. Plant Physiol pp.DOI: 10.1104/pp.16.00172     Reference: May 3rd, 2016
Gene Product: September 1st, 2003
Variation: April 1st, 2015
Gene Model: August 16th, 2017
64 days agoumc1103  :
7.04
 GRMZM2G414043
 Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Variation: August 16th, 2017
Gene Model: August 16th, 2017
64 days agosbp13 SBP-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: December 18th, 2014
64 days agohct12 hydroxycinnamoyltransferase12:
 
 GRMZM2G179703
 Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: November 7th, 2015
Gene Model: May 18th, 2016
64 days agodek36 defective kernel36: mutant kernels have a small and collapsed appearance at maturity, with a drastic size reduction in both embryo and endosperm; encodes an E+ subgroup PPR protein
 
 GRMZM5G892151
 Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   At4g21300 (TAIR) Reference: August 16th, 2017
Gene Product: December 27th, 2016
Variation: March 13th, 2017
Gene Model: March 13th, 2017
64 days agoincw5 invertase cell wall5:
 
 GRMZM2G095725
 Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   LOC_Os04g33740 (MSU/TIGR) Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: August 16th, 2017
Gene Model: August 16th, 2017
65 days agosyd1 splayed ATPase1:
6.05
 GRMZM2G467799
 Nelissen, H et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00269     Reference: July 2nd, 2015
Variation: September 1st, 2003
Gene Model: August 15th, 2017
65 days agoatg13c autophagy13c:
2.03
 GRMZM5G825909
 Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: July 29th, 2004
Gene Model: August 15th, 2017
65 days agopik1 phosphatidylinositol 3-kinase1:
4.05
    Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: September 1st, 2003
Variation: September 25th, 2007
65 days agoatg12 autophagy12: Mutants are phenotypically normal and fertile when grown under nutrient-rich conditions. However, when nitrogen-starved, seedling growth is severely arrested, and as the plants mature, they show enhanced leaf senescence and stunted ear development.
 
 GRMZM5G842517
 Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
65 days agovps2 vacuolar protein sorting2:
 
 GRMZM2G179662
 Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: August 15th, 2017
Gene Model: August 15th, 2017
65 days agoatg8b autophagy8b:
10.06
 GRMZM2G419694
 Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: March 31st, 2005
Gene Model: August 15th, 2017
65 days agoatg16L autophagy16L:
1.10
 GRMZM2G078252
 Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
66 days agozmm14 Zea mays MADS14: during spikelet development zmm4 probably works as a selector gene which is involved in distinguishing the upper and lower floret
1.02
 GRMZM2G099522
 Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: August 28th, 2013
Gene Model: August 14th, 2017
66 days agodhar2 dehydroascorbate reductase like2:
 
 GRMZM2G005710
     Gene Product: March 28th, 2013
Gene Model: August 14th, 2017
70 days agoc2 colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins
4.08
    Eloy, NB et al. 2016. Plant Physiol 173:998-1016     Reference: August 10th, 2017
Gene Product: September 1st, 2003
Variation: November 14th, 2013
70 days agoAY110435  :
6.05
 AC204292.4_FG006
     Variation: July 29th, 2004
Gene Model: August 10th, 2017
72 days agoIDPC175  : Sequence shows similarity to Arabidopsis HSP18.2
1.03
 GRMZM2G481529
     Variation: August 8th, 2017
Gene Model: August 8th, 2017
72 days agobnlg1953  : similar to Arabidopsis C2H2-like zinc finger protein
1.02
 GRMZM2G171073
     Variation: September 1st, 2003
Gene Model: August 8th, 2017
72 days agodng1 DNA glycosylase superfamily protein1:
1.02
 GRMZM2G005844
     Variation: August 8th, 2017
Gene Model: July 11th, 2017
72 days agommp66  : Similar to Arabidopsis and Medicago trunculata Phosphatidylinositol-4-phosphate 5-kinase
1.03
 GRMZM2G073591
     Variation: August 8th, 2017
Gene Model: August 8th, 2017
72 days agorte1 rotten ear1: mutants show distinct defects in vegetative and reproductive development, eventually causing widespread sterility in its tassel and ear.
1.05
 GRMZM2G166159
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: July 21st, 2014
Gene Model: July 19th, 2014
72 days agorte2 rotten ear2: mutants strongly enhance the phenotype of rte1 mutants in soils with low boron content, producing shorter plants that fail to form all reproductive structures
 
 GRMZM2G082203
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
72 days agorte3 rotten ear3: phylogenetically related to Class II clade boron transporters
 
 GRMZM2G051753
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
72 days agorte4 rotten ear4: phylogenetically related to Class II clade boron transporters
 
 GRMZM2G374989
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
72 days agorte5 rotten ear5: phylogenetically related to Class II clade boron transporters
 
 GRMZM2G302559
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
72 days agorte6 rotten ear6: phylogenetically related to Class II clade boron transporters
 
 GRMZM2G454327
 Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
75 days agodhn13 dehydrin13:
1.09
 GRMZM2G169372
 Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Variation: October 13th, 2016
Gene Model: October 14th, 2016
75 days agodhn6 dehydrin6:
3.07
 GRMZM2G031308
 Chen, J et al. 2002. Unpublished submission to Genbank Jan 2002     Reference: July 15th, 2008
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
75 days agorps15 ribosomal proteinS15: cDNA sequences, SSR umc1564
5.02
 GRMZM5G869564
     Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 5th, 2017
75 days agodhn3 dehydrin3:
4.06
 GRMZM2G373522
     Gene Product: August 5th, 2017
Variation: June 18th, 2011
Gene Model: October 16th, 2016
75 days agodhn7 dehydrin7:
 
 GRMZM2G002786
 Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
75 days agostk4 serine-threonine kinase4: Expression responds to available phosphate, and its expression up-regulated under phosphate starvation.
 
 GRMZM2G156013
 Azad, I; Alemzadeh, A. 2017. Molecular Cell Biology Research Communications 6:65-75     Reference: August 5th, 2017
Gene Product: May 13th, 2014
Variation: August 5th, 2017
Gene Model: August 5th, 2017
75 days agodhn14 dehydrin14:
 
 GRMZM2G448511
 Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Gene Model: August 5th, 2017
76 days agorpe1 Ribulose-phosphate 3-epimerase1:
1.02
        Variation: August 4th, 2017
76 days agommp135  : similar to Arabidopsis no pollen germination related 1
1.02
 GRMZM2G015219
     Variation: August 4th, 2017
Gene Model: August 4th, 2017
76 days agoras11E1 ras-related protein11E1:
 
 GRMZM2G164527
     Variation: January 24th, 2011
Gene Model: August 4th, 2017
78 days agoroa1 replication origin activator1: cDNA Z29368, homology with yeast and vertebrate DNA licensing activity; orthologs in barley and Arabidopsis, highly conserved
 
 GRMZM2G100639
 Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Variation: January 21st, 2011
Gene Model: June 1st, 2017
78 days agomcm1 minichromosome maintenance1:
 
 GRMZM2G065205
 Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047   AT4G02060 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 30th, 2017
78 days agomcm6 minichromosome maintenance6: Essential for both vegetative as well as reproductive growth and development in plants.
 
 GRMZM2G021069
 Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G44635 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
78 days agomcm7 minichromosome maintenance7:
 
 GRMZM2G139894
 Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
78 days agomcm4 minichromosome maintenance4:
 
 GRMZM2G066101
 Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
78 days agomcm5 minichromosome maintenance5:
5.08
 GRMZM2G075978
 Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
79 days agobnlg149  :
1.00
 GRMZM5G833153
     Variation: September 1st, 2003
Gene Model: August 1st, 2017
79 days agokrp17 kinesin heavy chain17:
1.01
 GRMZM2G092232
     Variation: September 1st, 2003
Gene Model: August 1st, 2017
79 days agoaic1 auxin import carrier1: cDNA encoding a protein with a deduced amino acid showing 73% identity to AtAUX1.
1.05
 GRMZM2G129413
 Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 21st, 2015
79 days agopin4 PIN-formed protein4: auxin efflux carriter similar to Arabidopsis PIN1 (Forestan et al 2012), but from PIN clade not found in all flowering plants save for the Brassicacease (O'Connor 2014 et al
4.08
 GRMZM2G171702
 Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
79 days agoaic2 auxin import carrier2:
 
 GRMZM2G045057
 Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: August 1st, 2017
Gene Model: August 1st, 2017
79 days agopin2 PIN-formed protein2: see pin1
5.06
 GRMZM2G074267
 Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: June 11th, 2007
Gene Model: June 7th, 2012
79 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
 GRMZM2G398650
 Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: June 7th, 2012
80 days agozmm2 Zea mays MADS2: cDNA similar to zag1 (Schmidt et al., 1993), and to AGAMOUS of Arabidopsis; zmm2 and zag1, like zmm1 and zag2, are possibly duplications phylogenetically; expression preferentially in the tassel
8.03
    Kelliher, T et al. 2014. Frontiers Plant Sci 5:347     Reference: August 8th, 2014
Gene Product: September 1st, 2003
Variation: July 31st, 2017
80 days agofen1 flap endonuclease1: required for DNA repair
6.07
 GRMZM2G121262
 Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G26680 (TAIR) Reference: July 31st, 2017
Gene Product: July 31st, 2017
Variation: July 31st, 2017
Gene Model: July 31st, 2017
84 days agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
    Tan, BC, et al. 2017. Genetics. 206:135-150     Reference: July 27th, 2017
Gene Product: September 20th, 2012
Variation: October 5th, 2012
84 days agohac101b histone acetyltransferase101b:
1.05
 GRMZM2G335438
     Gene Product: November 6th, 2003
Variation: September 1st, 2003
Gene Model: July 27th, 2017
84 days agodrl2 drooping leaf2: mutant enhances the phenotype of ifa1 mutants (a.k.a. drl1)
9.06
 GRMZM2G102218
 Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR) 		Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 12th, 2017
Gene Model: October 16th, 2015
84 days agoifa1 indeterminate floral apex1: mutants have perturbed floral and inflorescence meristems as well as droopy leaves with increased angle
 
 GRMZM2G088309
 Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR) 		Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 13th, 2017
Gene Model: October 16th, 2015
84 days agohyd6 hydroxylase6: beta-carotene hydroxylase
 
 GRMZM5G826824
 Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: July 27th, 2017
84 days agoimd4 isopropylmalate dehydrogenase4:
 
 GRMZM2G120857
     Gene Product: September 1st, 2003
Gene Model: July 27th, 2017
86 days agomyb3  : single copy; encodes WD-repeat protein
5.04
 GRMZM2G099334
 Carey, C; Strahle, JT; Selinger, D; Chandler, V. 2004. Plant Cell. 16:450-464     Reference: June 7th, 2004
Gene Product: July 25th, 2017
Variation: May 28th, 2015
Gene Model: May 28th, 2015
86 days agomyb89 MYB-transcription factor 89: homology to R2R3 Myb genes
 
 GRMZM2G040924
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 24th, 2016
86 days agomybr36 MYB-related-transcription factor 36: single copy genomic; similar to R2R3 Myb genes
2.02
 GRMZM2G014534
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 23rd, 2016
86 days agomyb14 MYB-transcription factor 14: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: July 25th, 2017
86 days agofdx3 ferredoxin3: ubiquitous, cDNA clone, gene specific probe, amino acid sequence; SSR umc1064, pFD3
1.11
 GRMZM2G053458
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 29th, 2015
Gene Model: July 25th, 2017
86 days agomyb45 MYB-transcription factor 45: single copy genomic clone asg8 contains myb motifNCBI: myb domain protein 4r1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.01
 GRMZM2G051793
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: July 25th, 2017
Gene Model: April 7th, 2017
87 days agote1 terminal ear1: stalked ear appendages at tip; varying to infolded ears
3.05
    Mendes-Moreira, P et al. 2015. PLoS One 10:e0124543     Reference: April 30th, 2015
Gene Product: September 1st, 2003
Variation: July 24th, 2017
87 days agowrky122 WRKY-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Hong, CY et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.12.064     Reference: December 14th, 2016
Gene Product: July 24th, 2017
Variation: December 14th, 2016
87 days agowrky29 WRKY-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
87 days agowrky98 WRKY-transcription factor 98: NCBI: probable WRKY transcription factor 12 (similarity to Arabidpsis gene)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.06
 GRMZM2G377217
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 24th, 2017
Variation: March 15th, 2017
Gene Model: March 15th, 2017
87 days agowrky16 WRKY-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.08
 GRMZM2G063216
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
Gene Model: December 6th, 2016
87 days agonl3 narrow leaf3: mutant leaves are ~12% narrower
 
    Brewbaker, JL. 2010. MNL 84:in press     Reference: July 24th, 2017
Variation: January 21st, 2011
87 days agolw5 lemon white5: Duplicate factor for lemon endosperm/white seedling with lw6 (Stinard, MNL 86).
 
    Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
87 days agolw6 lemon white6: Duplicate factor for lemon endosperm/white seedling with lw5 (Stinard, MNL 86).
 
    Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
89 days agoga20ox1 gibberellin 20-oxidase1:
1.12
 AC203966.5_FG005
 Nelissen, H et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12801     Reference: July 22nd, 2017
Gene Product: October 28th, 2014
Gene Model: October 27th, 2014
90 days agobt1 brittle endosperm1: mature kernel collapsed, angular, often translucent and brittle (alleles sh3, sh5)
5.04
    Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: February 24th, 2015
Variation: January 28th, 2014
91 days agobnlg2238  :
1.04
 GRMZM2G016480
     Variation: September 1st, 2003
Gene Model: July 20th, 2017
91 days agobnlg2295  :
1.04
 GRMZM2G143703
     Variation: September 29th, 2010
Gene Model: July 20th, 2017
91 days agoko1 kaurene oxidase1:
 
 GRMZM2G059308
 Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
91 days agoko2 kaurene oxidase2:
 
 GRMZM2G161472
 Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
3 months agolox3 lipoxygenase3:
3.06
    Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: November 14th, 2014
3 months agots1 tassel seed1: tassel pistillate and pendant; if removed, small ear with irregular kernel placement develops
2.04 - 2.05
    Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
3 months agolox10 lipoxygenase10: green leaf volatiles, circadian, herbivore defense; sequence predicts plastidic location; images show location in non-chlorophyll containing organelles
4.09
 GRMZM2G018424
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 6th, 2014
Gene Model: October 23rd, 2013
3 months agolox6 lipoxygenase6:
2.02
 GRMZM2G040095
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
3 months agolox1 lipoxygenase1: Full length cDNA is expressed in E. coli (Kim et al. 2003)
3.06
    Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: July 24th, 2008
3 months agolox2 lipoxygenase2:
3.06
 GRMZM2G156861
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: July 18th, 2017
Gene Model: June 10th, 2014
3 months agolox4 lipoxygenase4:
1.09
 GRMZM2G109056
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
3 months agolox5 lipoxygenase5:
5.02
 GRMZM2G102760
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
3 months agolox7 lipoxygenase7:
10.04
 GRMZM2G070092
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: April 23rd, 2009
Gene Model: June 10th, 2014
3 months agolox9 lipoxygenase9:
1.02
 GRMZM2G017616
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 12th, 2014
Gene Model: October 23rd, 2013
3 months agolox11 lipoxygenase11:
5.04
 GRMZM2G009479
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 10th, 2014
Gene Model: June 10th, 2014
3 months agolox12 lipoxygenase12: single copy, required for resistance to Fusarium stalk and ear rot
3.04
 GRMZM2G106748
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: August 15th, 2014
Gene Model: June 10th, 2014
3 months agolox13 lipoxygenase13:
 
 GRMZM5G822593
 Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Gene Model: July 18th, 2017
3 months agopspb2 photosystem II oxygen evolving polypeptide2: sequence highly similar to OEC23 oxygen evolving complex protein of photosystem II; located peripheral to lumenal side of thylakoid (Huang et al 2013)
 
 GRMZM2G047954
 Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
3 months agopspb1 photosystem II oxygen evolving polypeptide1: sequence similar to OEC23 photosystem II polypeptide; located by Huang et al 2013 to thylakoid peripheral on lumen side
 
 GRMZM2G016677
 Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
3 months agobnlg1564  :
1.07
 GRMZM5G821828
     Variation: September 1st, 2003
Gene Model: July 14th, 2017
3 months agoumc1627  : cDNA sequences; SSR umc1627; see also loci probed by umc171 and npi472
8.03
 GRMZM2G156857
 Sheen, J et al. 1987. Plant Mol Biol 9:217-226     Reference: September 1st, 2003
Variation: July 13th, 2017
Gene Model: July 14th, 2015
3 months agobnlg1484  :
1.03
 GRMZM2G019567
     Variation: September 1st, 2003
Gene Model: July 12th, 2017
3 months agobnlg1556  :
1.07
 GRMZM2G028726
     Variation: September 1st, 2003
Gene Model: July 12th, 2017
3 months agobnlg1014  :
1.01
 GRMZM2G020548
     Variation: September 1st, 2003
Gene Model: July 11th, 2017
3 months agobnlg1025  :
1.07
 GRMZM2G078088
     Variation: September 1st, 2003
Gene Model: July 11th, 2017
3 months agobnlg1331  :
1.09
 GRMZM2G466385
     Variation: September 1st, 2003
Gene Model: July 11th, 2017
3 months agoelfg1 elongation factor gamma1: endosperm cDNA 5C04C04 (uaz161), similar to Trypanosoma translation factor
6.04
    Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 9th, 2017
3 months agoelfa11 elongation factor alpha11:
 
 AC233866.1_FG006
     Variation: July 9th, 2017
Gene Model: July 8th, 2017
3 months agoms7 male sterile7: like ms2; tapetal cell dysfunction
7.02
 GRMZM5G890224
 Zhang, DF et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12786   AT5G22260 (TAIR)
LOC_Os09g27620 (MSU/TIGR)
Os09g0449000 (Gramene) 		Reference: July 6th, 2017
Gene Product: July 8th, 2017
Variation: July 6th, 2017
Gene Model: July 6th, 2017
3 months agoiaa28 Aux/IAA-transcription factor 28: gene product physically interacts with LA1 (Dong et al 2013)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Dong, Z, et al. 2013. Plant Physiol. 163:1306-1322     Reference: November 22nd, 2013
Variation: July 8th, 2017
3 months agodof47 C2C2-Dof-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Chen, Y; Cao, J. 2014. Plant Mol Biol Rep pp.doi: 10.1007/s11105-014-0835-9     Reference: November 26th, 2014
Variation: July 8th, 2017
3 months agoelfa1 elongation factor alpha1: (was csu116) multiple copies; leaf cDNA csu116, partial sequence identical to a tomato elongation factor
8.03
 GRMZM2G151193
 Berberich, T et al. 1995. Plant Mol Biol 29:611-615     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: July 8th, 2017
3 months agoeif2 elongation initiation factor2: etiolated leaf cDNA 6C02E11(uaz224) similar to eIF-2 gamma chain
7.04
 GRMZM2G107654
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: January 13th, 2015
3 months agoccamk1 calcium/calmodulin dependent protein kinase1: involved in ABA signaling (Ma et al 2012)
 
 GRMZM2G062772
 Ma, F; et al. 2012. J Exp Bot. 63:4835-47     Reference: April 23rd, 2013
Gene Product: December 3rd, 2013
Variation: July 7th, 2017
Gene Model: April 23rd, 2013
3 months agoarftf11 ARF-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
3 months agoarftf23 ARF-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
3 months agoarftf26 ARF-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
3 months agofea4 fasciated ear4: Mutants are semidwarfed with fasciated ears and tassels as well as greatly enlarged vegetative and inflorescence meristems.
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: January 27th, 2015
Variation: July 7th, 2017
3 months agoimp1 importin1: leaf cDNA csu244 similar to importin
8.03
    Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 7th, 2017
3 months agombd119 methyl binding domain119:
1.06
 GRMZM2G301098
 Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: December 24th, 2015
Variation: February 6th, 2010
Gene Model: July 7th, 2017
3 months agocax3 calcium exchanger3: Expression affected by ABP4, auxin, and Ca++. Homolog of Arabidopsis CAX1 involved in auxin transduction pathway.
3.09
 GRMZM2G011592
 Jurisic-Knezev, D; Bergougnoux, V; Milde, D; Fellner, M. 2014. Botany. 92:332-339     Reference: June 5th, 2014
Variation: July 7th, 2017
Gene Model: June 6th, 2014
3 months agoao2 aldehyde oxidase2:
5.01
 GRMZM5G899851
 Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: October 4th, 2014
Gene Model: July 7th, 2017
3 months agoabh4 abscisic acid 8'-hydroxylase4:
7.02
 GRMZM2G065928
 Vallabhaneni, R; Wurtzel, E. 2010. Arch Biochem Biophys. 504:112-7     Reference: February 15th, 2013
Gene Product: February 15th, 2013
Variation: March 31st, 2005
Gene Model: July 7th, 2017
3 months agocpps2 copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005)
1.04
 GRMZM2G044481
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 16th, 2012
Variation: December 28th, 2015
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
3 months agoga2ox1 gibberellin 2-oxidase1: Bolduc and Hake (Plant Cell 21:1647-58, 2009) identify this ga2ox as ga2ox1 by phylogeny. See Supplemental Figure 6. Comparison of syntenic regions containing ga2ox1 in different grasses. They also show that it is a direct target of KN1.
 
 GRMZM2G078798
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 27th, 2014
Variation: November 20th, 2012
Gene Model: November 20th, 2012
3 months agobnl9.11b(lts)  :
1.04
 GRMZM2G067371
     Gene Product: September 1st, 2003
Gene Model: July 6th, 2017
3 months agobhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
 GRMZM2G165042
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: July 6th, 2017
3 months agopif3 phytochrome interacting factor3: ortholog of Arabidopsis PIF3; nuclear localized protein; transgenic expression in rice suggest role in stress response (Gao Y et al 2015)
 
 GRMZM2G387528
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT1G09530 (TAIR)
LOC_Os05g04740 (MSU/TIGR) 		Reference: July 6th, 2017
Gene Product: September 14th, 2016
Gene Model: May 26th, 2015
3 months agoga20ox5 gibberellin 20-oxidase5:
 
 GRMZM2G060940
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 28th, 2014
Variation: July 6th, 2017
Gene Model: October 27th, 2014
3 months agokao2 kaurenoic acid oxidase2:
 
 GRMZM2G089803
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 15th, 2012
Gene Model: October 29th, 2014
3 months agobrc1 brassinosteroid catabolism1: member of BR catabolic gene family
 
 GRMZM2G107322
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR) 		Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
3 months agobrc2 brassinosteroid catabolism2: member of BR catabolic gene family
 
 GRMZM5G852663
 Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR) 		Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
3 months agouaz248a(his3)  :
1.04
 GRMZM2G176358
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 5th, 2017
Gene Model: July 5th, 2017
3 months agouaz248b(his3)  :
5.05
 GRMZM2G176358
 Shen, B; Carneiro, N; Torres-Jerez, I; Stevenson, B; McCreery, T; Helentjaris, T; Baysdorfer, C; Alm. 1994. Plant Mol Biol 26:1085-1101     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: July 5th, 2017
3 months agosdg110b  :
2.06
    Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
3 months agocrr8 cytokinin response regulator8:
1.02
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: April 25th, 2008
3 months agocrr2 cytokinin response regulator2: single copy, cDNA and genomic sequences; SSRs umc1569, umc1344; induced by cytokinin, and inorganic nitrogen
10.07
    Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: October 1st, 2015
3 months agocrr1 cytokinin response regulator1: single copy,cDNA and genomic sequences; induced in leaf by cytokinin, and inorganic nitrogen; SSR umc1622
2.01 - 2.01
 GRMZM2G040736
 Deji, A et al. 2002. Biosci Biotechnol Biochem 66: 1853-1858     Reference: July 14th, 2007
Gene Product: June 30th, 2017
Gene Model: October 23rd, 2013
3 months agoarr1 ARR-B-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
3 months agoarr2 ARR-B-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
3 months agoarr4 ARR-B-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
3 months agoarr5 ARR-B-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
3 months agoarr7 ARR-B-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
3 months agosdg128 set domain gene128: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   LOC_Os09g04890 (MSU/TIGR) Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
3 months agomez1 enhancer of zeste1:
6.01
    Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: July 3rd, 2015
3 months agomez2 enhancer of zeste2:
9.04
 GRMZM5G875502
 Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: July 28th, 2016
3 months agomez3 enhancer of zeste3:
1.03
 GRMZM2G043484
 Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2014
Gene Model: September 2nd, 2014
3 months agosdg101 set domain gene101:
7.02
 AC233961.1_FG001
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
3 months agosdg102 set domain gene102:
2.04
 GRMZM2G147619
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg104 SET domain-containing protein SET104:
2.03
    Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
3 months agosdg105 set domain gene105:
8.05 - 8.05
    Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
3 months agosdg106 set domain gene106:
2.07
 GRMZM2G409213
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg107 set domain gene107:
2.03
 GRMZM2G357972
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg108 set domain gene108:
4.04
 GRMZM2G149153
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg110a set domain gene110a:
7.02
 GRMZM2G130910
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg111 set domain gene111:
6.06
 GRMZM2G117458
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg113 set domain gene113:
3.06
    Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
3 months agosdg115 set domain gene115:
3.08
 GRMZM2G033350
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg116 set domain gene116:
2.07
 GRMZM2G105869
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg118 set domain gene118:
8.06
 GRMZM2G054380
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg119 set domain gene119:
2.06
    Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
3 months agosdg123 SET domain protein123: histone methylation; one of 3 with disrupted (S-ET) domains among 22 SET domain proteins
1.08
 GRMZM2G080462
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: February 2nd, 2015
Gene Model: February 2nd, 2015
3 months agosdg129 set domain gene129:
5.03
 GRMZM2G305124
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
3 months agosdg122 set domain gene122:
1.02
 GRMZM2G091916
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
3 months agocrr7 cytokinin response regulator7:
 
 GRMZM2G096171
 Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
3 months agoatx3 arabidopsis trithorax homolog3:
 
 GRMZM2G372928
 Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR) 		Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
3 months agoatx4 arabidopsis trithorax homolog4:
 
 GRMZM2G085266
 Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR) 		Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
3 months agoatx5 arabidopsis trithorax homolog5:
 
 GRMZM2G179814
 Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g46700 (MSU/TIGR) 		Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
3 months agosdg117 set domain gene117:
 
 GRMZM2G172427
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
3 months agosdg127 set domain gene127:
 
 GRMZM2G473138
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
3 months agosdg130 set domain gene130:
 
 GRMZM2G457881
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
3 months agoarr8 ARR-B-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.08
 GRMZM2G479110
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: June 30th, 2017
Gene Model: June 30th, 2017
3 months agocrr5 cytokinin response regulator5:
3.05
    Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Variation: March 31st, 2005
3 months agosdg103 SET domain group 103:
 
 GRMZM2G074094
 Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
3 months agocrr4 cytokinin response regulator4:
8.06
 GRMZM2G319187
 Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
3 months agoasg75  : NCBI: similar to Arabidopsis lipase class 3 family protein
1.04
 GRMZM5G882821
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 19th, 2009
Gene Model: June 30th, 2017
3 months agoali1 aladin1:
 
        Variation: June 23rd, 2017
4 months agoumc2236  : similar to Arabidopsis glutamate decarboxylase 1 based on LOC100501579
1.06
 GRMZM2G017110
     Variation: June 16th, 2017
Gene Model: June 16th, 2017
4 months agoumc2230  : NCBI:probable xyloglucan endotransglucosylase/hydrolase protein 27
1.05
 GRMZM2G070271
     Variation: January 10th, 2017
Gene Model: June 15th, 2017
4 months agoumc2231  : NCBI: vacuolar amino acid transporter 1-like
1.05
 GRMZM2G017170
     Variation: January 10th, 2017
Gene Model: June 15th, 2017
4 months agoumc1948  :
1.01
 GRMZM2G172758
     Variation: May 10th, 2016
Gene Model: June 14th, 2017
4 months agosirk1 sucrose-induced receptor kinase1: expression is altered in response to drought stress
 
 GRMZM2G161664
 Aquino, B et al. 2017. Frontiers Plant Sci pp.doi: 10.3389/fpls.2017.00852   AT5G10020 (TAIR) Reference: June 14th, 2017
Gene Product: July 1st, 2015
Gene Model: June 13th, 2017
4 months agoumc1603  :
1.05
 GRMZM2G127739
     Variation: November 17th, 2016
Gene Model: June 13th, 2017
4 months agofha2 FHA-transcription factor 2:
1.06
 GRMZM2G424241
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: June 9th, 2017
4 months agoumc1111  : Seed specific protein Bn15D14A
1.11
 GRMZM2G163912
     Variation: September 21st, 2016
Gene Model: June 9th, 2017
4 months agoumc1123  :
1.06
 GRMZM5G854901
     Variation: September 1st, 2003
Gene Model: June 9th, 2017
4 months agoumc1128  : CDPK-related kinase 3-like
1.07
 GRMZM2G031893
     Variation: September 1st, 2003
Gene Model: June 9th, 2017
4 months agoAY110479  :
1.11
 GRMZM2G087612
     Variation: July 29th, 2004
Gene Model: June 8th, 2017
4 months agoAY110632  :
1.03
 GRMZM2G032047
     Variation: July 29th, 2004
Gene Model: June 8th, 2017
4 months agoAY110640  : similar to Arabidopsis RNA pseudouridine synthase 5
1.03
 GRMZM2G158261
     Variation: July 29th, 2004
Gene Model: June 8th, 2017
4 months agohagtf3 GNAT-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: June 7th, 2017
4 months agoAY110052  :
1.03
 GRMZM2G141799
     Variation: September 25th, 2007
Gene Model: June 7th, 2017
4 months agoAY110159  : similar to M. trunculata Chloroplast inner envelope protein
1.07 - 1.08
 GRMZM5G888696
     Variation: July 29th, 2004
Gene Model: June 7th, 2017
4 months agoAY110296  : similar to M. trunculata Ubiquitin and WLM domain-containing protein
1.06
 GRMZM2G115981
     Variation: March 21st, 2006
Gene Model: June 7th, 2017
4 months agoAY110396  :
1.05
 GRMZM2G110572
     Variation: July 29th, 2004
Gene Model: June 7th, 2017
4 months agoAI855190  :
1.05
 GRMZM2G443525
     Variation: July 29th, 2004
Gene Model: June 6th, 2017
4 months agoAY109916  :
1.12
 GRMZM2G422649
     Variation: July 29th, 2004
Gene Model: June 6th, 2017
4 months agocap2 calcium pump2: paralog of cap1; calcium-transporting ATPase
1.03
 GRMZM2G428096
 Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: June 6th, 2017
Gene Model: June 6th, 2017
4 months agocat1 catalase1: electrophoretic mobility; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
5.03
    Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
4 months agosod4 superoxide dismutase4: electrophoretic mobility; cytosolic; Cu-Zn dimeric; intralocus hybrid bands occur; two similar sequences X17564 (sod4), X17565(sod4A)
1.04
    Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: February 12th, 2007
Variation: April 20th, 2005
4 months agocipk8 calcineurin B-like-interacting protein kinase8:
 
 GRMZM2G383240
 Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: June 2nd, 2017
Variation: June 2nd, 2017
Gene Model: June 2nd, 2017
4 months agogsr1 glutathione reductase1: single copy leaf cDNA csu111, similar to pea glutathione reductase
1.01
    Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: January 30th, 2015
4 months agouce4 ubiquitin conjugating enzyme4:
2.01
    Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: July 29th, 2004
4 months agocbl1 calcineurin B-like1:
 
 GRMZM2G107575
 Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
4 months agocbl9 calcineurin B-like9:
 
 GRMZM2G015324
 Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
4 months agoapx4 ascorbate peroxidase4:
 
 GRMZM2G316256
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: June 5th, 2017
Gene Model: June 5th, 2017
4 months agoucp1 uncoupling protein1:
 
 GRMZM5G852877
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
4 months agoucp2 uncoupling protein2:
 
 GRMZM2G165629
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Gene Model: June 5th, 2017
4 months agoznf3 zinc finger protein3:
 
    Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
4 months agoznf4 zinc finger protein4:
 
 GRMZM2G048154
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
4 months agoznf5 zinc finger protein5:
 
 GRMZM2G001205
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
4 months agoznf6 zinc finger protein6:
 
 GRMZM5G804618
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
4 months agocbl4 calcineurin B-like2:
6.06
 GRMZM2G001221
 Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
4 months agompk3 MAP kinase3: transcript and protein activity upregulated by ABA and H2O2
1.03
 GRMZM2G017792
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: July 9th, 2013
Variation: July 12th, 2013
Gene Model: July 9th, 2013
4 months agoucp3 uncoupling protein homolog3:
 
 GRMZM2G000510
 Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
4 months agoorc2 origin recognition complex2: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
 GRMZM2G117238
 Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
4 months agoorc4 origin recognition complex4: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
 GRMZM5G876520
 Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
4 months agocda1 cytidine deaminase1:
7.02
 GRMZM2G082924
 Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
4 months agocda2 cytidine deaminase2:
2.06
 GRMZM2G008216
 Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
4 months agohat1 histone acetyltransferase1: cDNA, genomic and peptide sequence; antibody cross-reactivity
7.02
 GRMZM5G851405
 Lusser, A et al. 1999. Nucl Acid Res 27:4427-4435     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 28th, 2009
Gene Model: June 3rd, 2017
4 months agofcr1 ferric-chelate reductase (NADH)1: member of a multi-gene family
3.06
 GRMZM2G133213
 Bagnaresi, P et al. 1999. Biochem J 338:499-505     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 9th, 2008
Gene Model: June 3rd, 2017
4 months agohmt1 homocysteine S-methyltransferase 1:
 
    Ranocha, P et al. 2001. Plant J 25:575-584     Reference: September 1st, 2003
Gene Product: July 19th, 2004
Variation: June 3rd, 2017
4 months agoork1 outward rectifying potassium channel1:
4.05
 GRMZM2G156255
 Philippar, K, et al. 2003. J Biol Chem. 278:16973-81     Reference: July 14th, 2006
Gene Product: February 19th, 2008
Variation: February 19th, 2008
Gene Model: June 3rd, 2017
4 months agoorc3 origin recognition complex3: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
 GRMZM2G381822
 Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Variation: November 6th, 2010
Gene Model: June 2nd, 2017
Recommended by Marty Sachs:
March 7th, 2007
4 months agotel2 telomere maintenance2:
 
 GRMZM2G144166
 Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Gene Model: June 1st, 2017
4 months agodek38 defective kernel38: mutants are embryonic lethal, has a defective basal endosperm transfer (BETL) layer, and results in a smaller seed with highly underdeveloped endosperm.
 
 GRMZM2G048851
 Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170   At2g39910 (TAIR) Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: May 2nd, 2017
Gene Model: May 2nd, 2017
4 months agotti1 tel2-interacting protein1:
 
 GRMZM2G056403
 Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: June 1st, 2017
Gene Model: June 1st, 2017
4 months agoeng1 endo-1,3-1,4-beta-D-glucanase1: coleoptile enzyme, orthologous to rice enzyme; located in cell wall, IAA- stimulated coleoptile growth inhibited by antibody
4.05
 GRMZM2G073079
 Thomas, B et al. 1998. Plant Physiol 117: 1525     Reference: March 16th, 2006
Variation: May 20th, 2009
Gene Model: June 1st, 2017
Recommended by Ed Coe:
January 8th, 2008
4 months agorab30 responsive to abscisic acid30: cDNA and protein elicited by ABA
1.01
 GRMZM2G472236
 Burr, B et al. 1991. MNL 65:105-110     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: May 2nd, 2011
Gene Model: June 1st, 2017
4 months agomtl3 metallothionein3: cDNA highly expressed during microsporogenesis, one (or two) copies, high sequence homology with type 2 metallothionein.
4.05
 GRMZM2G099340
 Charbonnel-Campaa, L et al. 2000. Gene 254:199-208     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
4 months agohvp1 human viral protein homolog1: endosperm cDNA 5C02B04, similar to a virus transcription activator
9.02
 GRMZM5G852396
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
4 months agosin1 sin homolog1: endosperm cDNA 5C01E06, similar to yeast SIN3
 
 GRMZM2G319104
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
4 months agosmk2 small kernel2: mutants are recessive embryo-lethal small kernel
4.10
 GRMZM2G023528
 Yang, Y-Z, et al. 2017. Plant Physiol. 0:doi: 10.1104/pp.16.01295     Reference: June 1st, 2017
Gene Product: April 14th, 2017
Variation: April 14th, 2017
Gene Model: April 14th, 2017
4 months agoric1 ras-related protein RIC1:
 
 GRMZM2G106960
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 12th, 2011
Gene Model: June 1st, 2017
4 months agoara3 ras-related protein ARA-3:
 
 GRMZM2G061900
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
4 months agorgp2 ras-related protein RGP2:
 
 GRMZM2G093186
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
4 months agosqsh1 squalene synthase homolog1: Designation as sqsh1 based on high homology to sqs1 sequence; existence of several cDNAs indicates a functional gene (EHC Jan 2011)
 
 GRMZM2G029396
     Variation: January 27th, 2011
Gene Model: June 1st, 2017
4 months agocnh1 carbon-nitrogen hydrolase homolog1:
9.07
 GRMZM2G169365
 Guo, M; Rupe, M; Danilevskaya, O; Yang, X; Hut, ZH. 2003. Plant J. 36:30-44     Reference: November 12th, 2010
Variation: March 24th, 2011
Gene Model: June 1st, 2017
4 months agopsei5 cystatin5:
6.05
 GRMZM2G024264
 Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
4 months agopsei10 cystatin10:
8.06
 GRMZM2G030717
 Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
4 months agorpl44 ribosomal protein L44: vegetative meristem cDNA 7C02A07
7.03
 GRMZM2G009412
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 24th, 2009
Gene Model: June 1st, 2017
4 months agobk2 brittle stalk2: brittle plant parts after 4-leaf stage
9.04 - 9.05
 GRMZM2G109326
 Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: March 6th, 2012
Variation: March 6th, 2012
Gene Model: March 5th, 2012
4 months agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
    Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: November 12th, 2013
4 months agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
    Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: October 10th, 2014
4 months agowx1 waxy1: amylopectin (stained red by iodine) replaces amylose (blue staining) in endosperm and pollen; extensive allelic series; application: highly branched starch has gelling properties, used for food gels, adhesives, and other industrial purposes; SSRs phi022, 027, 061NCBI: granule-bound starch synthase 1, chloroplastic/amyloplastic
9.03
    Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: June 4th, 2008
Variation: March 4th, 2017
4 months agomrp1 Myb related protein1: transforms aleurone cells into endosperm transfer cells and required to maintain transfer cell phenotype
8.05
    Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
4 months agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
 GRMZM2G137954
 Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   LOC_Os02g19820 (MSU/TIGR) Reference: May 31st, 2017
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
4 months agoubr1 ubiquitin receptor1: Orthologous to Arabidopsis DA1
 
 GRMZM2G017845
 Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: October 11th, 2012
Variation: October 11th, 2012
Gene Model: October 10th, 2012
4 months agolimtf4 LIM-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
 GRMZM2G099328
 Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   AT4G36860 (TAIR) Reference: May 31st, 2017
Gene Product: May 31st, 2017
Variation: May 31st, 2017
Gene Model: May 31st, 2017
4 months agoAY103944  : similar to Arabidopsis poly(A) binding protein 8
2.04
 GRMZM2G352129
     Variation: September 25th, 2007
Gene Model: May 30th, 2017
4 months agoAI714808  : similar to Arabidopsis protein phosphatase methylesterase 1
2.04
 GRMZM2G005346
     Variation: July 29th, 2004
Gene Model: May 30th, 2017
4 months agoAW036917  :
6.05
 GRMZM2G106218
     Variation: July 29th, 2004
Gene Model: May 30th, 2017
4 months agoereb94 AP2-EREBP-transcription factor 94: strongly expressed in the maize endosperm; might act as a key regulator of starch synthesis in maize (Li et al., 2017)
 
    Li, H et al. 2017. J Plant Physiol 216:11-16     Reference: May 29th, 2017
Variation: May 9th, 2017
4 months agomab27 math-btb27:
 
 GRMZM2G161569
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 28th, 2017
Gene Model: February 14th, 2017
4 months agorap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
 GRMZM2G700665
 Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 27th, 2017
Gene Model: November 20th, 2012
4 months agopebp8 phosphatidylethanolamine-binding protein8: florigen activity: complements Arabidopsis FT mutants, promoting flowering at short days. Requires functional id1 gene.(Lazakis et al 2011)
 
 GRMZM2G179264
 Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: May 6th, 2011
Variation: June 19th, 2015
Gene Model: May 6th, 2011
4 months agod8 dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins.
1.09
 GRMZM2G144744
 Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 12th, 2007
Variation: August 29th, 2007
Gene Model: May 11th, 2011
4 months agozfl1 zea floricaula/leafy1: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
10.06
    Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 20th, 2007
4 months agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
    Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: October 9th, 2014
4 months agodlf1 delayed flowering1: tall late plant with additional nodes and leaves at flowering; no apparent response to day length
 
    Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 6th, 2011
4 months agomads1 MADS1: transcripts detected in egg cells and invivo zygotes of maize, also expressed in synergids and antipodal cells. during flower development expressed in all ear spikelet organ primordia at intermediate stages
9.07
    Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: September 1st, 2003
Variation: April 15th, 2008
4 months agocca1 circadian clock associated1: myb transcription factor - clock gene
 
 GRMZM2G014902
 Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: July 31st, 2016
Variation: March 18th, 2011
Gene Model: July 30th, 2016
4 months agomab20 math-btb20:
 
 GRMZM2G009724
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 26th, 2017
Gene Model: February 14th, 2017
4 months agocki4 cyclin-dependent kinase inhibitor4:
 
 GRMZM2G358931
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 26th, 2017
Gene Model: March 7th, 2017
4 months agomab1 math-btb1:
 
 AC195147.3_FG001
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
4 months agomab15 math-btb15:
 
 GRMZM2G148213
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
4 months agosca1 short chain alcohol dehydrogenase1: single copy leaf cDNA, csu149, similar to ts2
5.00
 GRMZM2G332976
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 1st, 2003
Variation: July 27th, 2013
Gene Model: June 23rd, 2015
4 months agozep1 zeaxanthin epoxidase1:
2.04
 GRMZM2G127139
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: August 29th, 2011
Gene Model: April 8th, 2013
4 months agolw1 lemon white1: white seedling, pale yellow endosperm; some alleles have zebra or luteus phenotypes
1.10
 GRMZM2G027059
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 20th, 2012
Variation: March 10th, 2016
Gene Model: January 8th, 2014
4 months agovp5 viviparous5: like vp2cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070
1.02 - 1.02
    Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Variation: March 4th, 2014
4 months agoaox1 alternative oxidase1: primers give PCR product closely similar to alternative oxidase in other species
2.02
 AC233960.1_FG002
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: February 22nd, 2012
Gene Model: February 17th, 2012
4 months agocmk1 cytidine methyl kinase1: encodes 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [a.k.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase]
3.06
 GRMZM5G859195
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 9th, 2014
Gene Model: October 4th, 2014
4 months agonced5 nine-cis-epoxycarotenoid dioxygenase5:
 
 GRMZM2G417954
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 1st, 2011
Gene Model: September 20th, 2012
4 months agoaox2 alternative oxidase2: primers give PCR product closely similar to alternative oxidase in other species
 
 GRMZM2G125669
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: March 1st, 2012
Gene Model: February 17th, 2012
4 months agoccd8 carotenoid cleavage dioxygenase8: Mutants have mild branching, short stature, small ear size, and narrow-stalk
 
 GRMZM2G446858
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 21st, 2012
Gene Model: September 20th, 2012
4 months agocrti1 carotene isomerase1: enclodes carotene isomerase1
 
 GRMZM2G108457
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoggps1 geranylgeranyl pyrophosphate synthase1: part of multigene family encoding geranylgeranyl diphosphate synthase
 
 AC194970.5_FG001
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agoggps3 geranylgeranyl pyrophosphate synthase3: part of multigene family encoding geranylgeranyl diphosphate synthase
 
 GRMZM2G102550
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agoippi1 isopentenyl pyrophosphate isomerase1: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
 GRMZM2G108285
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoippi2 isopentenyl pyrophosphate isomerase2: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
 GRMZM2G145029
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
4 months agoggps4 geranylgeranyl pyrophosphate synthase4: part of multigene family encoding geranylgeranyl diphosphate synthase
 
 GRMZM2G005909
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
4 months agocyp14 cytochrome P450 14: encodes CYP97C
 
 GRMZM5G837869
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 3rd, 2015
Variation: June 3rd, 2015
Gene Model: April 8th, 2013
4 months agocrti3 carotene isomerase3: enclodes carotene isomerase
 
 GRMZM2G144273
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: September 29th, 2014
4 months agonced2 nine-cis-epoxycarotenoid dioxygenase2:
 
 GRMZM2G407181
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agonced6 nine-cis-epoxycarotenoid dioxygenase6:
 
 GRMZM2G110192
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
4 months agomecs1 methyl erythritol cyclodiphosphate synthase1:
 
 GRMZM5G835542
 Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
4 months agomab24 math-btb24:
 
 GRMZM2G103251
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
4 months agomab25 math-btb25:
 
 GRMZM2G088086
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
4 months agomab26 math-btb26:
 
 GRMZM2G161610
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
5 months agoptac14 plastid transcriptionally active14: Ortholog of Arabidopsis PTAC14. Associates with Plastid Encoded RNA polymerase (PEP). Required for PEP-mediated transcription. (A. Barkan, 2015)ortholog of Arabidopsis PTAC14, a PEP-associated protein, required for PEP-mediated transcription; cpRNA defects in maize similar to other PEP-deficient mutants
 
 GRMZM5G807767
 Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: May 21st, 2017
Gene Model: February 17th, 2015
5 months agoppr102 pentatricopeptide repeat102:
 
 GRMZM2G012174
   At5g50280 (TAIR)
LOC_Os05g22870 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
5 months agoznfn1 zinc finger protein1:
 
 GRMZM2G086277
   At5g52010 (TAIR)
LOC_Os06g07020 (MSU/TIGR) 		Gene Product: April 4th, 2017
Gene Model: May 21st, 2017
5 months agoppr36 pentatricopeptide repeat36:
 
 GRMZM2G333678
   AT4G19191 (TAIR)
LOC_Os11g14980 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
5 months agoppr61 pentatricopeptide repeat61:
 
 GRMZM2G341479
   AT1G09220 (TAIR)
LOC_Os02g49830 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
5 months agopsa2 photosystemI2: thylakoid lumen protein with protein disulfided isomerase activity; mutants lack photosystem I core complex polypeptidesDnaJ-type zinc finger domain protein found in thylakoid lumen. Required for Photosystem I assembly. (A. Barkan, 2015)
 
 GRMZM2G021687
 Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2014
Gene Model: September 18th, 2014
5 months agopsa3 photosystemI3: Mutants have a pale green seedling phenotype; lacks photosystem I core complex polypeptides
 
 GRMZM2G051403
 Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT3G55250 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
5 months agohcf148 high chlorophyll fluorescence148: Ortholog of Arabidopsis Y3IP1. PSI assembly factor, cooperates with Ycf3. (A. Barkan, 2015)mutants lack photosystem I, pale green seedling lethal; the Arabidopsis ortholog, Y3IP1, is a PSI assembly factor and cooperates with Ycf3
3.06
 GRMZM2G002165
 Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Variation: December 30th, 2015
Gene Model: February 17th, 2015
5 months agopyg7 pale yellowgreen7: mutants are pale yellow green; encodes an assembly factor that interacts with PSA3
 
 GRMZM5G809292
 Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT1G22700 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
5 months agoppr6 pentatricopeptide repeat6:
 
 GRMZM2G093291
   At5g27270 (TAIR)
LOC_Os06g02120 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
5 months agoppr13 pentatricopeptide repeat13:
 
 GRMZM2G099604
   At2g02980 (TAIR)
LOC_Os03g58100 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
5 months agoppr100 pentatricopeptide repeat100:
 
 GRMZM2G428579
   At2g01860 (TAIR)
LOC_Os02g02590 (MSU/TIGR) 		Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
5 months agoak2 ankyrin repeat protein2:
4.10
 GRMZM2G019838
   At5g40160 (TAIR)
LOC_Os06g13000 (MSU/TIGR) 		Variation: September 25th, 2007
Gene Model: May 20th, 2017
5 months agomab17 math-btb17:
 
 GRMZM2G166049
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 17th, 2017
Gene Model: February 14th, 2017
5 months agocki2 cyclin-dependent kinase inhibitor2:
 
 GRMZM2G037926
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 17th, 2017
Gene Model: March 7th, 2017
5 months agoumc1509  : NCBI: similar to Arabidopsis PATATIN-like protein 5
4.02
 GRMZM2G154523
     Variation: May 16th, 2017
Gene Model: May 16th, 2017
5 months agostk3 serine-threonine kinase3: pollen-specific expression
 
 GRMZM2G301647
 Wang, H et al. 2017. Genome pp.doi: 10.1139/gen-2016-0089     Reference: January 9th, 2017
Gene Product: May 13th, 2014
Variation: May 16th, 2017
Gene Model: January 9th, 2017
5 months agochlh1 Mg chelatase subunit H 1:
 
 GRMZM2G323024
 Zoschke, R; Chotewutmontri, P; Barkan, A. 2017. Adv Frontiers Plant Sci. 8:385   AT5G13630 (TAIR)
LOC_Os03g20700 (MSU/TIGR) 		Reference: May 15th, 2017
Gene Product: June 11th, 2007
Gene Model: May 15th, 2017
5 months agorpl16 (cp) 50S ribosomal protein L16 gene:
 
    Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288     Reference: May 15th, 2017
Gene Product: September 1st, 2003
5 months agoppr103 pentatricopeptide repeat-containing protein103: required for the accumulation of plastid ribosomes
 
 GRMZM2G170896
 Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288   AT5G03800 (TAIR) Reference: May 15th, 2017
Gene Product: December 27th, 2016
Variation: April 21st, 2016
Gene Model: April 21st, 2016
5 months agopin15 PIN-formed protein15: similar to rice OsPIN1b and OsPIN1d
 
 GRMZM2G403601
 Li, ZX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12751   LOC_Os11g04190 (MSU/TIGR) Reference: May 13th, 2017
Gene Product: April 21st, 2014
Gene Model: May 13th, 2017
5 months agodmc1 disrupted meiotic cDNA homolog1:
 
 GRMZM2G109618
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 12th, 2017
Gene Model: January 27th, 2017
5 months agomab4 math-btb4:
 
 GRMZM2G081441
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 12th, 2017
Gene Model: February 13th, 2017
5 months agopza03527  :
3.03
        Variation: May 11th, 2017
5 months agodbb1 double B-box zinc finger protein1:
2.04
 GRMZM2G018876
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agomre11a meiotic recombination protein 11 homolog A:
 
 GRMZM2G106056
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 10th, 2017
Gene Model: January 27th, 2017
5 months agomab10 math-btb10:
 
 GRMZM2G154437
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
5 months agomab14 math-btb14:
 
 GRMZM2G052985
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
5 months agomab16 math-btb16:
 
 GRMZM2G172210
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 14th, 2017
5 months agodbb2 double B-box zinc finger protein2:
 
 GRMZM2G131982
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb3 double B-box zinc finger protein3: similar to Arabidopsis light-regulated zinc finger protein 1
 
 GRMZM5G834596
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb5 double B-box zinc finger protein5:
 
 GRMZM2G118884
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb7 double B-box zinc finger protein7:
 
 GRMZM2G110541
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb8 double B-box zinc finger protein8:
 
 GRMZM2G070446
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb9 double B-box zinc finger protein9:
 
 GRMZM2G116475
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb10 double B-box zinc finger protein10:
 
 GRMZM2G143718
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb11 double B-box zinc finger protein11:
 
 GRMZM2G028594
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb12 double B-box zinc finger protein12:
 
 GRMZM2G098442
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb6 double B-box zinc finger protein6:
5.05
 GRMZM2G095299
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agodbb4 double B-box zinc finger protein4:
4.05
 GRMZM2G019335
 Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
5 months agogcs1 generative cell specific1:
 
 GRMZM2G412911
 Moiseeva, YM et al. 2017. Russian Journal of Developmental Biology. 48:117-121   AT4G11720 (TAIR)
LOC_Os05g18730 (MSU/TIGR) 		Reference: April 10th, 2017
Variation: May 9th, 2017
Gene Model: April 10th, 2017
5 months agodof21 C2C2-Dof-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.02
 GRMZM2G162749
 Peng, J et al. 2017. Frontiers Plant Sci 8:685     Reference: May 6th, 2017
Variation: January 6th, 2017
Gene Model: January 6th, 2017
5 months agocncr1 cinnamoyl CoA reductase1: Mutant results in plants with improved cell wall digestibility
1.07
 GRMZM2G131205
 Smith, RA et al. 2017. Biotechnol Biofuels. 10:109     Reference: May 5th, 2017
Gene Product: September 1st, 2003
Variation: May 5th, 2017
Gene Model: June 23rd, 2016
5 months agomab7 math-btb7:
 
 GRMZM2G110531
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 13th, 2017
5 months agomab18 math-btb18:
 
 GRMZM2G060765
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
5 months agomab30 math-btb30:
 
 GRMZM2G319215
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
5 months agocki3 cyclin-dependent kinase inhibitor3:
 
 GRMZM2G157510
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 4th, 2017
Gene Model: March 7th, 2017
5 months agomac1 multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications!
10.03
 GRMZM2G027522
 Wang, C-J, et al. 2012. Development. 139:2594-2603     Reference: May 2nd, 2017
Gene Product: August 2nd, 2012
Variation: August 10th, 2012
Gene Model: July 26th, 2012
Recommended by Chung-Ju Rachel Wang:
December 19th, 2013
5 months agosm1 salmon silks1: silks salmon color with P1-rr and P1-wr, brown with P1-ww
6.05 - 6.05
 GRMZM2G031311
 Casas, MI et al. 2016. Plant Cell 28:1297-1309     Reference: May 1st, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
5 months agoprh17 protein phosphatase homolog17: responds to Pi starvation
 
 GRMZM2G164352
 Wang, J et al. 2017. PLoS One 12:e0176538     Reference: April 28th, 2017
Gene Product: September 1st, 2003
Variation: April 28th, 2017
Gene Model: April 28th, 2017
5 months agorca1 RUBISCO activase1: single copy leaf cDNA csu901 smilar to RUBISCO activaseencodes the beta form of RUBISCO activase
4.00
 GRMZM2G162282
 Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: October 28th, 2014
Variation: September 1st, 2003
Gene Model: February 11th, 2014
5 months agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
    Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Variation: December 6th, 2013
5 months agonip1a NOD26-like membrane intrinsic protein1: leaf cDNA csu177 similar to rice nodulin
5.04
 GRMZM2G041980
 Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: September 1st, 2003
Variation: June 2nd, 2015
Gene Model: June 2nd, 2015
5 months agonod1 narrow odd dwarf1: mutants are small plants with narrow leaves
 
 GRMZM2G027821
 Rosa, M et al. 2017. Plant Cell 29:474-490   AT4G35920 (TAIR)
LOC_Os03g06120 (MSU/TIGR) 		Reference: April 27th, 2017
Gene Product: March 4th, 2017
Variation: March 4th, 2017
Gene Model: March 4th, 2017
5 months agobnl10.13a  : NCBI: probable serine/threonine-protein kinase PIX13
10.05
 GRMZM2G142832
 Matz, EC et al. 1992. MNL 66:107     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
5 months agohb91 Homeobox-transcription factor 91: Tests with B-A translocations indicated that this probe did not map to chromosomes 4L or 6L.NCBI: Homeodomain leucine zipper family IV proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.07
 GRMZM2G122897
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
5 months agonpi285a(cac)  :
10.02
 GRMZM2G350841
 Hulbert, SH and Bennetzen, JL. 1991. Mol Gen Genet 226:377-382     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
5 months agoumc130  :
10.03
 GRMZM2G125931
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
5 months agoumc259a  :
10.05
 AC233888.1_FG001
     Variation: April 25th, 2017
Gene Model: April 25th, 2017
6 months agotps23 terpene synthase23: part of defense response to herbivory by western maize rootworm and Spodoptera littoralis but not expressed highly in most North American maize
10.03
 GRMZM2G127336
 Tamiru, A et al. 2017. Ecology and Evolution. 7:2835-2845     Reference: April 22nd, 2017
Gene Product: July 21st, 2008
Variation: March 21st, 2017
Gene Model: August 22nd, 2012
6 months agoumc95  : NCBI: Putative calmodulin-binding family protein
9.05
 GRMZM5G880028
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
6 months agonta1 N-terminal amidase1: NCBI: CemA-like proton extrusion protein-related
9.08
 GRMZM2G110258
 Anderson, L, et al. 2004. Genetics. 166:1923-1933   At4g34090 (TAIR)
LOC_Os03g01920 (MSU/TIGR) 		Reference: February 12th, 2011
Variation: April 21st, 2017
Gene Model: April 21st, 2017
6 months agoasg12a  : genomic clone, single copyNCBI: putative glycosyl hydrolase family 10 protein
9.07
 GRMZM2G048375
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
6 months agocsu634  : protein phosphatase 2C-like (Alexandrov et al.)
9.05
 GRMZM2G006429
     Variation: April 20th, 2017
Gene Model: April 20th, 2017
6 months agonpi414a  : similar to Arabidopsis NADH dehydrogenase
8.08
 GRMZM2G069260
 Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 19th, 2017
Gene Model: April 19th, 2017
6 months agocsu31a  : partially sequenced cDNA to leaf mRNANCBI: Tat pathway signal sequence
8.06
 GRMZM2G154508
 Heredia-Diaz, O et al. 1994. MNL 68:30-34     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 19th, 2017
6 months agoagrr21  : NCBI: protein CURVATURE THYLAKOID 1C, chloroplastic
8.09
 GRMZM2G302639
 Armstrong, CL et al. 1992. Theor Appl Genet 84:755-762     Reference: September 1st, 2003
Variation: September 25th, 2007
Gene Model: April 19th, 2017
6 months agosi606065d12  :
1.03
 GRMZM2G149481
     Gene Product: April 19th, 2017
Gene Model: April 19th, 2017
6 months agoatl1 auxin transporter-like1: mutant tassels have reduced branch numbers; bald tip on ears with fewer spikelets per row, and agravitropic root growth
 
 GRMZM2G128918
 Huang, P et al. 2017. Nature Plants 3:17054   AT2G38120 (TAIR)
LOC_Os01g63770 (MSU/TIGR) 		Reference: April 19th, 2017
Gene Product: April 19th, 2017
Variation: April 19th, 2017
Gene Model: March 12th, 2015
6 months agorip1 ribosome-inactivating protein1: electrophoretic mobility, seed-specific, abundant 32kD endosperm protein (b32 protein), cytosolic, inactivates rabbit (not maize or wheat) ribosomes; cDNA ZmRIP3, SSR phi014, phi060, umc1202
8.03
 GRMZM2G063536
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: April 19th, 2005
Gene Model: April 18th, 2017
6 months agocsu454(gst)  :
1.01
 GRMZM2G096247
     Gene Product: September 1st, 2003
Variation: August 9th, 2010
Gene Model: April 18th, 2017
6 months agoumc1149  : NCBI: Glutathione S-transferase family
8.06
 GRMZM2G105005
     Gene Product: September 1st, 2003
Variation: April 18th, 2017
Gene Model: April 18th, 2017
6 months agorop7 Rho-related protein from plants 7: cDNA, plasma membrane targeting, SSR umc1950In Maize Genetics Conference Abstracts rop7 was called rop1. These abstracts are indeed discussing rop7.
8.05
 AC209819.3_FG012
 Christensen, T, et al. 2003. Plant Physiol. 133:1791-1808     Reference: March 26th, 2004
Gene Product: April 1st, 2004
Variation: April 18th, 2017
Gene Model: January 1st, 2015
6 months agogst9 glutathione transferase9:
9.07
 GRMZM2G126763
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
6 months agogst15 glutathione transferase15:
8.05
 GRMZM2G150474
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
6 months agogst17 glutathione transferase17:
5.05
 GRMZM2G064255
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
6 months agogst21 glutathione transferase21:
3.05
 GRMZM2G428168
 McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
6 months agogst22 glutathione transferase22:
10.04
 GRMZM2G330635
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
6 months agogst26 glutathione transferase26:
4.05
 GRMZM2G363540
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
6 months agogst34 glutathione transferase34:
 
 GRMZM2G149182
 McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
6 months agoumc1457  : NCBI: universal stress protein family
8.03
 GRMZM5G887068
     Variation: April 14th, 2017
Gene Model: April 14th, 2017
6 months agoumc124a(chk)  : "NCBI: choline/ethanolamine kinase; putative choline kinase 2"
8.03
 GRMZM2G087146
 Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 14th, 2017
Gene Model: April 14th, 2017
6 months agosxd1 sucrose export defective1: vitamin E synthesis; anthocyanin accumulates in a non-clonal pattern at tip and margins of leaves soon after emergence from whorl; reduced plant height
5.04
    Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: December 1st, 2012
Variation: August 7th, 2012
6 months agosut3 sucrose transporter3:
1.08
 GRMZM2G083248
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
6 months agotdy1 tie-dyed1: Leaf blades develop variegated chlorotic and green regions; chlorotic regions hyperaccumulate carbohydrates.(Braun 2008)
6.07
 GRMZM2G321778
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Variation: September 14th, 2011
Gene Model: July 14th, 2011
6 months agotdy2 tie-dyed2: leaves yellow in patches simulating tie-dyed or zebra patterns
 
 GRMZM5G840560
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 5th, 2012
Variation: September 4th, 2012
Gene Model: September 4th, 2012
6 months agosut4 sucrose transporter4:
5.09
 GRMZM2G145107
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: February 17th, 2017
Gene Model: April 17th, 2013
6 months agosut5 sucrose transporter5:
 
 GRMZM2G081589
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
6 months agosut6 sucrose transporter6:
 
 GRMZM2G106741
 Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
6 months agosut7 sucrose transporter7: single copy cDNA; transcripts observed in mature leaf blades of young plants, and at reproductive stage in various tissues including leaf sheaths, culms, husks, pedicels, with little transcript detected in silks and developing kernels.
9.07
 GRMZM2G087901
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: April 17th, 2013
6 months agocps5 chloroplast protein synthesis5: NCBI: putative leucine--tRNA ligase, mitochondrialChloroplast protein synthesis 5: chloroplast leucyl-tRNA synthetase (A. Barkan, 2015)
8.02
 GRMZM5G858471
 Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 12th, 2017
6 months agorpl40 50S ribosomal protein L40: npi220b was called npi553 but is listed in the database as npi220b
8.01
 GRMZM2G157007
 Sisco, PH. 1991. Crop Sci 31:1263-1266     Reference: September 1st, 2003
Variation: April 12th, 2017
Gene Model: April 12th, 2017
6 months agomyb23 MYB-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: April 11th, 2017
6 months agoumc168  : NCBI: similar to Arabidopsis aldehyde dehydrogenase 22A1
7.06
 GRMZM2G135341
 Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Variation: April 11th, 2017
Gene Model: April 11th, 2017
6 months agofdr1 first division restitution1: confers high anther fertility in haploids
 
    Ren, J et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2892-6     Reference: April 10th, 2017
Variation: September 6th, 2013
6 months agohb48 Homeobox-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
6 months agohb76 Homeobox-transcription factor 76: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
6 months agoumc1710  : NCBI: similar to Arabidopsis PLAC8 family protein
7.04
 GRMZM2G008687
     Variation: April 7th, 2017
Gene Model: April 7th, 2017
6 months agoasg34a(msd)  :
7.02
 GRMZM2G054267
 Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 7th, 2017
6 months agoasg49  : NCBI: Pentatricopeptide repeat-containing protein
7.03
 GRMZM2G003869
 Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 7th, 2017
Gene Model: April 7th, 2017
6 months agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
    Li, CX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12739     Reference: April 6th, 2017
Gene Product: December 18th, 2014
Variation: November 8th, 2007
6 months agonpi393  :
6.03
 GRMZM2G158668
 Stuber, CW et al. 1992. Genetics 132:823-839     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 6th, 2017
6 months agoumc132a(chk)  : NCBI: putative choline kinase 2
6.07
 GRMZM2G014303
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
6 months agoumc21  : NCBI: Protein-tyrosine-phosphatase IBR5
6.05
 GRMZM2G174170
 Rocheford, TR. 1994. Proc Annu Corn Sorghum Ind Res Conf 49:239-249     Reference: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
6 months agoumc59a  : NPI linkage catalog of 1/25/91 places this probe on chromosome 7.NCBI: WAT1-related protein
6.02
 GRMZM2G134930
 Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: April 5th, 2017
Gene Model: April 5th, 2017
6 months agoln1 linoleic acid1: lower ratio of oleate to linoleate in kernelembryo oil content and composition,cloned by chromosome walk to high oil QTL; maybe allele of ln1 (Zheng 2008)
6.04 - 6.04
 GRMZM2G169089
 Karn, A et al. 2017. G3 7:1157-1164     Reference: April 4th, 2017
Gene Product: July 22nd, 2008
Variation: August 16th, 2014
Gene Model: August 15th, 2014
6 months agopsa1 photosystemI1: Required for PSI accumulation. Harbors NifU domain implicated in Fe-S cluster assembly. Ortholog of Arabidopsis Nfu-IVa. (A. Barkan, 2015)lacks photosystem I core complex polypeptides; harbors NifU domain implicated in Fe-S cluster assemblyNCBI: NFU3 NifU-like protein 3
6.02
 GRMZM2G100976
 Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: April 4th, 2017
Gene Model: April 4th, 2017
6 months agozfp30 putative zinc finger protein30:
4.09
 GRMZM2G116079
     Gene Product: April 4th, 2017
Variation: May 19th, 2015
Gene Model: May 19th, 2015
6 months agoznf2 Zinc finger nuclease2: located between sh1 and bz1 (Hawkins et al., 2014)
9.01
 GRMZM2G478553
 Hawkins, JS et al. 2014. Plant J 79:375-384     Reference: September 25th, 2015
Gene Product: April 4th, 2017
Variation: September 25th, 2015
Gene Model: September 25th, 2015
6 months agorzfl1 RING zinc finger protein-like1:
9.06
    Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: April 4th, 2017
Variation: September 25th, 2007
6 months agotsh1 tassel sheath1: leaves develop at base of tassel branches and spikelet pairstsh1 was positionally cloned by Whipple et al, 2010. It was initially mapped between umc2059 and bnlg1740. The position was narrowed using a larger population, synteny with rice provided two candidate genes, one was selected based on sequencing differences from progenitors for three independent EMS alleles.
6.07
    Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: April 4th, 2017
Variation: October 6th, 2011
6 months agorhcp1 ring hc protein1: expressed during brace root initiation and regulated by abiotic stresses.
 
 GRMZM2G024690
 Li, W-L et al. 2017. J Integrative Agric 16: 60345-60347     Reference: April 3rd, 2017
Gene Product: April 4th, 2017
Variation: April 3rd, 2017
Gene Model: April 3rd, 2017
6 months agotan1 tangled1: (was py1) leaves short, pointed, fine white streaks; displays abnormally oriented cell divisions and altered growth and development throughout the plant
6.05
    Martinez, P; Luo, A; Sylvester, AW; Rasmussen, CG. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1619252114     Reference: April 2nd, 2017
Variation: June 29th, 2005
6 months agorgh3 rough endosperm3: Mature rgh3 seeds show a rough, etched, or pitted endosperm surface as well as a reduced seed size
 
 GRMZM5G849788
 Gault, CM, et al. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1616173114     Reference: April 2nd, 2017
Gene Product: December 29th, 2011
Variation: December 29th, 2011
Gene Model: April 29th, 2013
6 months agohct5 hydroxycinnamoyltransferase5: up-regulated in the Rp1-D21 mutant lines
2.04
 GRMZM2G158083
 Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: November 7th, 2015
Gene Model: November 7th, 2015
6 months agocesa9 cellulose synthase9: cDNA
2.06
    Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
6 months agocesa13 cellulose synthase13: NCBI: cellulose synthase A catalytic subunit 4 [UDP-forming]-like
 
 GRMZM2G037413
 Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Gene Model: April 1st, 2017
6 months agocml1 coumarate ligase1:
5.04
 GRMZM2G075333
 Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: April 1st, 2017
Gene Model: June 23rd, 2016
6 months agodek10 defective kernel10: collapsed endosperm; lethal; cultured embryos green, curled, stubby; encodes a E-subgroup PPR protein
4.06 - 4.11
 GRMZM2G087226
 Qi, WW et al. 2017. Genetics 205:1489-1501     Reference: March 31st, 2017
Gene Product: December 27th, 2016
Variation: February 20th, 2017
Gene Model: February 20th, 2017
6 months agomybr51 MYB-related-transcription factor 51:
5.09
 GRMZM2G379167
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 31st, 2017
6 months agocol12 2C2-CO-like-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: zinc finger protein CONSTANS-LIKE 16
5.07
 GRMZM2G041991
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: March 31st, 2017
Gene Model: March 31st, 2017
6 months agogrf9 growth-regulating factor9: NCBI: growth-regulating factor 9-like
5.08 - 5.08
 GRMZM5G893117
 Zhang, D et al. 2008. Plant Sci 175:809-817     Reference: July 6th, 2015
Variation: March 30th, 2017
Gene Model: March 30th, 2017
6 months agoumc126a  : NCBI: probable WRKY transcription factor 51
5.06
    Sachs, MM pp.87-102 in Basra, AS. 1994.Harwood Academic Publishers     Reference: September 1st, 2003
Variation: March 30th, 2017
6 months agod11 dwarf11: dominant mutant that appears to inhibit GA biosynthesis.
 
    Wang, YJ et al. 2017. Plant Mol Biol Rep pp.DOI: 10.1007/s11105-017-1028-0     Reference: March 30th, 2017
Variation: June 18th, 2013
6 months agoumc1482  : NCBI: NF-180
5.04
 GRMZM2G037865
     Variation: September 1st, 2003
Gene Model: March 29th, 2017
6 months agoemp17 empty pericarp17: mutants abolish the C-to-U editing of ccmB-43 and rps4-335 sites in mitochondria
 
 AC212684.3_FG012
 Yang, Y-Z et al. 2017. New Phytol pp.doi: 10.1111/nph.14424     Reference: January 26th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: January 26th, 2017
6 months agoemp10 empty pericarp10: mutant effects the cis-splicing of nad2 intron 1 and seed development
 
 GRMZM2G078416
 Cai, MJ et al. 2017. Plant J pp.doi: 10.1111/tpj.13551     Reference: March 28th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: March 28th, 2017
6 months agorz474a(dnaj)  : NCBI: putative dnaJ chaperone family protein
5.03
 GRMZM2G134980
     Variation: March 24th, 2017
Gene Model: March 24th, 2017
7 months agoipt5 isopentenyl transferase5: encodes an isopentenyl transferase
5.01
 AC210013.4_FG005
 Vyroubalova, S, et al. 2009. Plant Physiol. 151:433-447     Reference: March 25th, 2014
Gene Product: March 19th, 2014
Variation: September 1st, 2003
Gene Model: March 23rd, 2017
7 months agovps1 vesicular transport protein1: NCBI: similar to Aabidopsis Vps51/Vps67 family (components of vesicular transport) protein
5.02
 GRMZM2G023858
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 23rd, 2017
Gene Model: March 23rd, 2017
7 months agoasg73  :
5.02
 GRMZM2G122863
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: March 23rd, 2017
Gene Model: March 23rd, 2017
7 months agowee1 wee1: cDNA single copy, deduced protein 50% identity to protein kinase domain of human Wee1; SSR umc1255
4.11
 GRMZM5G878541
 Sun, YM, et al. 1999. Proc Natl Acad Sci, USA. 96:4180-4185     Reference: May 24th, 2010
Variation: March 21st, 2017
Gene Model: March 17th, 2017
7 months agopco131924a  : NCBI: similar to Arabdopsis L-ascorbate peroxidase
5.05
        Variation: March 21st, 2017
7 months agoms2 male sterile2: like ms1; affected between vacuolation and pore formation
9.03
    Kang, D et al. 2017. Plant Breed pp.DOI: 10.1111/pbr.12468     Reference: March 17th, 2017
Variation: August 23rd, 2013
7 months agotcptf2 TCP-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.09
 GRMZM2G003944
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: March 17th, 2017
Gene Model: March 17th, 2017
7 months agophp20608a  :
4.10
 GRMZM2G101818
 Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: March 17th, 2017
Gene Model: March 17th, 2017
7 months agocyp8 cytochrome P-450 8: developing inflorescence, cDNA clone, assayed in transgenic yeast microsomes
1.08
    Sun, XC et al. 2017. doi: 10.1038/ncomms14752   LOC_Os10g26340 (MSU/TIGR) Reference: March 16th, 2017
Gene Product: September 1st, 2003
Variation: October 24th, 2012
7 months agocyp21 cytochrome P-450 21:
 
 GRMZM2G054603
     Gene Product: August 18th, 2015
Gene Model: March 16th, 2017
7 months agocyc13 cyclin13:
4.07
 GRMZM2G075117
     Gene Product: June 26th, 2009
Variation: March 15th, 2017
Gene Model: March 15th, 2017
7 months agomatl1 matrilineal1: encodes a pollen-specific phospholipase; novel edits lead to a 6.7% haploid induction rate
 
 GRMZM2G471240
 Kelliher, T, et al. 2017. Nature. 542:105-109     Reference: March 14th, 2017
Gene Product: March 14th, 2017
Variation: February 10th, 2017
Gene Model: January 25th, 2017
7 months agoumc1511  :
4.05
 GRMZM2G004878
     Variation: March 10th, 2017
Gene Model: March 11th, 2017
7 months agogras28 GRAS-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: DELLA protein GAI-like
4.04
 GRMZM2G342217
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 11th, 2017
7 months agoglk22 G2-like-transcription factor 22: NCBI: Putative MYB DNA-binding domain superfamily proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.04
 GRMZM2G315506
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 10th, 2017
7 months agophp20725a  : NCBI: plant viral-response family protein
4.02
 GRMZM2G076435
 Llaca, V et al. 1997. Maize Genetics Conference Abstracts 39     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 10th, 2017
7 months agocki1 cyclin-dependent kinase inhibitor1:
1.08
 GRMZM2G116885
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: December 6th, 2016
Gene Model: December 6th, 2016
7 months agokri1 ketol-acid reductoisomerase1: endosperm cDNA 5C05H04 similar to plant branched chain amino acid synthesis enzyme (aka uaz269)cdo Probe is an oat leaf cDNA. Minor band maps to this site.
1.04
 GRMZM2G161868
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 8th, 2017
Gene Model: March 8th, 2017
7 months agocki6 cyclin-dependent kinase inhibitor6:
4.07
 GRMZM2G084570
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
7 months agocki7 cyclin-dependent kinase inhibitor7:
 
 GRMZM2G343769
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
7 months agocki8 cyclin-dependent kinase inhibitor8:
 
 GRMZM2G154414
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
7 months agocki5 cyclin-dependent kinase inhibitor5:
5.07
 GRMZM2G101613
 Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
7 months agocap1 calcium pump1: anoxic root cDNA, low or single copy, complements yeast mutants defective in Ca++-pumps
8.05
    Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: September 1st, 2003
7 months agocrp1 chloroplast RNA processing1: Chloroplast PPR protein. Activates translation of petA and psaC genes. Stabilizes petB-petD intergenic RNA termini. Binds petA, psaC, petD 5'UTRs. (A. Barkan, 2015)pale green seedling lethal, high chlorophyll leaf fluorescence;cytochromeb6/f and PSI deficient; protein translation
7.03 - 7.06
    Ferrari, R et al. 2017. Frontiers in Plant Science 8:163   AT5G42310 (TAIR)
LOC_Os07g36390 (MSU/TIGR)
LOC_Os07g36390 (Gramene) 		Reference: March 7th, 2017
Gene Product: December 27th, 2016
Variation: July 23rd, 2009
7 months agoumc1641  : NCBI: chaperone protein dnaJ 49-like
3.09
 GRMZM2G064031
     Variation: March 7th, 2017
Gene Model: March 7th, 2017
7 months agoumc17a  : NCBI plasma membrane associated protein
3.08
 GRMZM2G057283
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: March 7th, 2017
Gene Model: March 7th, 2017
7 months agocap3 calcium pump3: paralog of cap1; calcium-transporting ATPase
 
 GRMZM2G162426
 Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: May 20th, 2015
Gene Model: May 20th, 2015
7 months agocap4 calcium pump4: paralog of cap1; calcium-transporting ATPase
 
 AC233878.1_FG004
 Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Gene Model: May 26th, 2015
7 months agoprh16 putative protein phosphatase 2C 16:
2.01
 GRMZM2G056572
     Variation: February 17th, 2017
Gene Model: March 6th, 2017
7 months agoumc1539  : NCBI: selenoprotein family protein
3.05 - 3.06
 GRMZM2G109429
     Variation: March 3rd, 2017
Gene Model: March 3rd, 2017
7 months agonactf132 NAC-transcription factor 132: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Estermann, MA et al. 2017. Mol Breed 37:12     Reference: March 3rd, 2017
Gene Product: September 22nd, 2015
Variation: March 3rd, 2017
7 months agonactf49 NAC-transcription factor 49: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Estermann, MA et al. 2017. Mol Breed 37:12     Reference: March 3rd, 2017
Gene Product: September 22nd, 2015
Variation: March 3rd, 2017
7 months agozar3 Zea mays ARGOS homolog3: putative auxin response gene regulating organ size
 
 GRMZM2G137546
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: April 14th, 2014
7 months agozar1 Zea mays ARGOS1: affects yield, and response to drought
 
 GRMZM2G446201
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: April 14th, 2014
7 months agozar8 Zea mays ARGOS8: Over-expression can lead to improved drought tolerance
 
 GRMZM2G354338
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agozar6 Zea mays ARGOS6:
 
 GRMZM2G162250
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agozar7 Zea mays ARGOS7:
 
 GRMZM2G113583
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agozar9 Zea mays ARGOS9:
 
 GRMZM2G082943
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agozar5 Zea mays ARGOS5:
 
 GRMZM2G175995
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agozar4 Zea mays ARGOS4:
 
 GRMZM2G066029
 Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
7 months agogts1 Glutamine--tRNA ligase cytoplasmic1:
3.03
 GRMZM2G048012
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 2nd, 2017
Gene Model: March 2nd, 2017
7 months agobnl8.15  : NCBI: putative E3 ubiquitin-protein ligase LIN
3.01
 GRMZM2G153127
 Armstrong, CL et al. 1992. Theor Appl Genet 84:755-762     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 1st, 2017
7 months agoumc32a  : NCBI: putative ubiquitin-conjugating enzyme E2 25
3.01
 GRMZM2G123519
 Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 1st, 2017
7 months agocsu32a  : NCBI: heme-binding protein 2 alex heme-binding protein 2 precursor
3.02
 GRMZM2G093405
 Savidan, YH et al. 1995. pp.86-92 in Taba, S. 1995.CIMMYT Maize Program     Reference: September 1st, 2003
Variation: March 1st, 2017
Gene Model: March 1st, 2017
7 months agotcptf43 TCP-transcription factor 43: Mapped upper band to this site.Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.simiiar to Arabidosis transcription factor TCP2
2.10
 GRMZM2G020805
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: February 28th, 2017
Gene Model: February 28th, 2017
7 months agosid1 sister of indeterminate spikelet1: inflorescence architecture, apparent target of tasselseed4 microRNA (Chuck et al 2008),
 
 GRMZM2G176175
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: February 27th, 2017
Variation: October 17th, 2014
Gene Model: October 16th, 2014
Recommended by Lisa Harper:
September 2nd, 2008
7 months agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
 GRMZM5G862109
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: February 27th, 2017
Variation: December 4th, 2013
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
7 months agoereb53 AP2-EREBP-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Lowe, KS et al. 2016. Plant Cell pp.10.1105/tpc.16.00124   LOC_Os1g67410 (MSU/TIGR) Reference: October 1st, 2016
Gene Product: February 27th, 2017
7 months agodwil1 dwarf & irregular leaf1: mutant plants have shorter internodes, shorter, wider and wrinkled leaves, as well as smaller leaf angle
 
 GRMZM2G013657
 Jiang, F et al. 2012. PLoS One 7:e37040     Reference: March 12th, 2013
Gene Product: February 27th, 2017
Variation: March 18th, 2013
Gene Model: March 12th, 2013
7 months agoemp6 empty pericarp6: mutant causes early arrest in grain development leading to an empty pericarp phenotype.similar to Arabidopsis ubiquitin thiolesterase
2.07
 GRMZM2G048392
 Chettoor, AM et al. 2014. J Integr Plant Biol pp.DOI: 10.1111/jipb.12234     Reference: July 4th, 2014
Gene Product: July 4th, 2014
Variation: February 24th, 2017
Gene Model: February 24th, 2017
7 months agotms5 thermosensitive male-sterile5: mutants were fertile at 24C, but male sterile at 32C; exhibit fertility transition at 28C
4.01
 GRMZM2G147727
 Li, J et al. 2017. Journal of Genetics and Genomics pp.doi: 10.1016/j.jgg.2017.02.002   LOC_Os02g12290 (MSU/TIGR)
Os02g0214300 (Gramene) 		Reference: February 24th, 2017
Variation: February 24th, 2017
Gene Model: February 24th, 2017
7 months agoask2 aspartate kinase2: lysine-threonine resistance
2.06
 GRMZM2G052935
 Wang, X et al. 2007. J Exp Bot 58:2653-2660     Reference: September 9th, 2010
Gene Product: September 1st, 2003
Variation: September 9th, 2010
Gene Model: February 23rd, 2017
7 months agocsu337  :
2.05
 GRMZM2G164440
 Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 23rd, 2017
7 months agoumc131  : similar to predicted 2,3-dimethylmalate lyase-like isoform 2 of B. distachyon / phosphoenolpyruvate carboxylase-like protein of Arabidopsis
2.05
 GRMZM2G024933
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: February 22nd, 2017
Gene Model: February 22nd, 2017
8 months agopal2 phenylalanine ammonia lyase2:
2.04 - 2.04
 GRMZM2G441347
 Rius, SP et al. 2016. Frontiers Plant Sci pp.doi: 10.3389/fpls.2016.00523     Reference: May 6th, 2016
Gene Product: September 1st, 2003
Variation: February 21st, 2017
Gene Model: February 21st, 2017
8 months agomads68 MADS-transcription factor 68: Ortholog of rice MADS47; regulates zein gene transcription by interacting with o2 (Qiao et al., 2016)
1.02
 GRMZM2G059102
 Qi, WW et al. 2016. BMC Biotechnology 16:58   LOC_Os03g08754 (MSU/TIGR) Reference: February 20th, 2017
Variation: April 15th, 2016
Gene Model: April 15th, 2016
8 months agortcs1 rootless concerning crown and seminal roots1: root system reduced solely to a primary root yet plants can be carried to seed; cyclin cDNAs absent; naphthalene acetic acid induces adventitious roots
1.02
 GRMZM2G092542
 Tai, H et al. 2017. J Exp Bot 68:403-414     Reference: February 17th, 2017
Gene Product: October 5th, 2009
Variation: October 5th, 2009
Gene Model: July 23rd, 2013
8 months agosweet1a sugars will eventually be exported transporter1a:
3.06
 GRMZM2G039365
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosps1 sucrose phosphate synthase1: cDNA encodes a 1068 amino acid leaf protein; transgenic (E. coli) directs sucrose phosphate synthesis
8.06
    Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: January 15th, 2015
8 months agosweet15a sugars will eventually be exported transporter15a:
4.05
 GRMZM2G168365
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Variation: September 1st, 2003
Gene Model: November 3rd, 2015
8 months agospp1 sucrose-phosphatase1:
8.04
    Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: August 2nd, 2013
8 months agosus1 sucrose synthase1: (was sus2, css1) sucrose synthase-1 (SUS1) of embryo and other tissues, compare sh1; SSRs phi016, 032, 042
9.04
 GRMZM2G152908
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: October 25th, 2006
Variation: October 27th, 2014
Gene Model: August 12th, 2014
8 months agosweet4b sugars will eventually be exported transporter4b:
5.04
 GRMZM2G144581
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet11 sugars will eventually be exported transporter11:
1.06
 GRMZM2G368827
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agomstr1 monosaccharide transporter1:
7.00
 GRMZM2G135739
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: July 14th, 2008
Gene Model: September 17th, 2015
8 months agomstr2 monosaccharide transporter2:
4.04
 GRMZM2G141034
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: October 19th, 2010
Gene Model: September 17th, 2015
8 months agomstr4 monosaccharide transporter4:
9.04
 GRMZM2G034061
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: July 14th, 2008
Gene Model: September 17th, 2015
8 months agosweet1b sugars will eventually be exported transporter1b:
 
 GRMZM2G153358
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet2 sugars will eventually be exported transporter2:
 
 GRMZM2G324903
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet3a sugars will eventually be exported transporter3a:
 
 GRMZM2G179679
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet3b sugars will eventually be exported transporter3b:
 
 GRMZM2G060974
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet4a sugars will eventually be exported transporter4a:
 
 GRMZM2G000812
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet6b sugars will eventually be exported transporter6b:
 
 GRMZM2G416965
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet12a sugars will eventually be exported transporter12a:
 
 GRMZM2G133322
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet12b sugars will eventually be exported transporter12b:
 
 GRMZM2G099609
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet13a sugars will eventually be exported transporter13a:
 
 GRMZM2G173669
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet13b sugars will eventually be exported transporter13b:
 
 GRMZM2G021706
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet13c sugars will eventually be exported transporter13c:
 
 GRMZM2G179349
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet14a sugars will eventually be exported transporter14a:
 
 GRMZM2G094955
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet14b sugars will eventually be exported transporter14b:
 
 GRMZM2G015976
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet15b sugars will eventually be exported transporter15b:
 
 GRMZM5G872392
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet17a sugars will eventually be exported transporter17a:
 
 GRMZM2G106462
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet17b sugars will eventually be exported transporter17b:
 
 GRMZM2G111926
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet16 sugars will eventually be exported transporter16:
 
 GRMZM2G107597
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
8 months agosweet6a sugars will eventually be exported transporter6a:
3.09
 GRMZM2G157675
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Variation: March 31st, 2005
Gene Model: November 3rd, 2015
8 months agosps2 sucrose phosphate synthase2: leaf cDNA csu328, sequence similar to sps1
3.05
 GRMZM2G140107
 Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: March 19th, 2015
Gene Model: March 18th, 2015
8 months agogst38 glutathione transferase38:
1.05
 GRMZM2G066369
 McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: February 16th, 2017
8 months agomab23 math-btb23:
6.02
 GRMZM2G143782
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agomab2 math-btb2:
 
 GRMZM2G404188
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab3 math-btb3:
 
 GRMZM2G337139
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab5 math-btb5:
 
 GRMZM2G372171
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab6 math-btb6:
 
 GRMZM2G125162
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab8 math-btb8:
 
 GRMZM2G418031
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab9 math-btb9:
 
 GRMZM2G574887
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab11 math-btb11:
 
 GRMZM2G077428
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab12 math-btb12:
 
 GRMZM2G181276
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab13 math-btb13:
 
 GRMZM2G027688
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
8 months agomab21 math-btb21:
 
 GRMZM2G109738
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agomab22 math-btb22:
 
 GRMZM2G046238
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agomab28 math-btb28:
 
 GRMZM2G041963
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agomab29 math-btb29:
 
 GRMZM2G077951
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agomab31 math-btb31:
 
    Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
8 months agomab19 math-btb19:
7.01
 GRMZM2G074323
 Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
8 months agoms45 male sterile45: abnormal microspore wall formation, tassel specific, cDNA clone
9.06
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: June 27th, 2014
Variation: June 27th, 2014
8 months agopex1 pollen extensin-like1: clone specifies repeat motif ser-pro4
2.09
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agoam1 ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)affects switch to meiotic cell cycle
5.02
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: August 11th, 2011
8 months agoan1 anther ear1: andromonoecious dwarf, intermediate stature; few tassel branches; responds to gibberellins; an1-6923 includes deletion of Bz2+
1.08
 GRMZM2G081554
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 16th, 2012
Variation: September 18th, 2015
Gene Model: November 7th, 2011
8 months agod1 dwarf plant1: andromonoecious, short, compact plants; responds to gibberellins; d1-t intermediate in height
3.03
 GRMZM2G036340
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: October 25th, 2014
Variation: October 30th, 2014
Gene Model: October 2nd, 2012
8 months agod3 dwarf plant3: like d1, plant short and compact; "d2" mutation(s) are allelic (d2 is lapsed)
9.03
 GRMZM2G093195
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 15th, 2012
Variation: May 19th, 2006
Gene Model: November 8th, 2012
8 months agod5 dwarf plant5: like d1
2.02
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: December 3rd, 2015
8 months agoig1 indeterminate gametophyte1: low male fertility, polyembryony, heterofertilization, polyploidy, androgenesis (male and female affected)
3.06 - 3.07
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: October 2nd, 2007
Variation: October 19th, 2010
8 months agoms22 male sterile22: pollen mother cells degenerate
7.02
 GRMZM2G442791
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 12th, 2012
Variation: February 12th, 2013
Gene Model: August 11th, 2012
8 months agoms8 male sterile8: pollen mother cells degenerate
8.06
 GRMZM2G119265
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: July 29th, 2013
Variation: July 29th, 2013
Gene Model: July 29th, 2013
8 months agots2 tassel seed2: like ts1, but tassel branches variably pistillate and staminate; sequence homologous to short chain alcohol dehydrogenases; SSR phi001
1.03
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agots5 tassel seed5: dominant Ts5 tassels are upright with scattered, short silks; branches mostly pistillate toward the base
4.03 - 4.05
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: September 1st, 2003
8 months agopme1 pectin methylesterase1: pollen; cDNA and genomic sequences
10.04
 GRMZM2G125356
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: October 8th, 2015
Gene Model: October 8th, 2015
8 months agoes4 embryo sac4: one of 4-5 copy gene family; pre-zygotic, embryo sac specific; required for pollen tube growth arrest and burst
 
 GRMZM2G128301
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: April 22nd, 2011
Variation: April 25th, 2011
Gene Model: April 22nd, 2011
8 months agoms32 male sterile32: like ms1
2.00 - 2.10
 GRMZM2G163233
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 2nd, 2013
Variation: December 4th, 2016
Gene Model: September 2nd, 2013
8 months agoocl4 outer cell layer4:
1.05 - 1.06
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: February 23rd, 2013
8 months agoexpb1 beta expansin1: belongs to a multigene family; most likely exists as two or more copies.
9.04
 GRMZM2G146551
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: April 24th, 2008
Variation: December 1st, 2012
Gene Model: February 10th, 2015
8 months agots3 tassel seed3: dominant Ts3 tassel has large sections of either pistillate or staminate flowers in tandem; some pollen
1.09
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: September 1st, 2003
8 months agotcl1 tapetal cell layer1: Mutant fails to form coherent middle and tapetal layers, and there are extra cells between the endothecial and inner sporogenous (AR) cells.
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: February 12th, 2013
8 months agohrl1 heirless1: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agonol1 no legacy1: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agobsl2 baseless2: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agosba1 superbase1: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agomrn1 maternally reduced endosperm1: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agobsl1 baseless1: maternal-effect dek
 
    Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
8 months agodcl101 dicer-like 101: mutant plants have 'fuzzy tassel' and reduced stature.
1.01
 GRMZM2G040762
 Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 5th, 2006
Variation: December 4th, 2014
Gene Model: November 12th, 2014
8 months agobhlh175 bHLH-transcription factor 175: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Lu, X et al. 2017. Plant Physiol Biochem 113:78-88   AT3G26744 (TAIR) Reference: February 11th, 2017
Gene Product: September 14th, 2016
8 months agoms26 male sterile26: tapetal cells abnormal, die early; microspores vacuolate early and abort after the tetrad stage
1.02 - 1.02
    Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 30th, 2013
Variation: September 27th, 2013
8 months agoals2 acetolactate synthase2: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kineticsSecond band mapped to this site. Acetolactate pyruvate-lyase from tobacco used as the dup(als2) probe
5.04
 GRMZM2G143008
 Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2013
Gene Model: July 27th, 2016
8 months agoals1 acetolactate synthase1: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kinetics
4.05
    Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2013
8 months agoAY110393  :
1.04
 GRMZM2G084783
     Variation: September 25th, 2007
Gene Model: February 10th, 2017
8 months agocipk3 calcineurin B-like-interacting protein kinase3: single copy genomic clone similar to plant protein kinase
1.04
 GRMZM2G174896
 Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: February 10th, 2017
Gene Model: February 10th, 2017
8 months agorgd1 ragged seedling1: (aka lbl1) seedling leaves narrow, thread-like, have difficulty in emerging; low temperature enhances expression
6.01 - 6.01
    Xu, J et al. 2017. Nucl Acid Res pp.doi: 10.1093/nar/gkx085     Reference: February 9th, 2017
Gene Product: December 18th, 2014
Variation: June 8th, 2015
8 months agobaf1 barren stalk fastigiate1: ear shoots often absent, or distorted and fused to culm at base; tassel branches erect, bundled, fused to culm at base
9.02
 GRMZM2G072274
 Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Variation: August 15th, 2011
Gene Model: December 8th, 2014
8 months agobd1 branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy
7.05
 GRMZM2G307119
 Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400   At5g18560 (TAIR)
LOC_Os07g47330 (MSU/TIGR)
LOC_Os01g21820 (Gramene) 		Reference: February 3rd, 2017
Gene Product: July 27th, 2009
Variation: August 13th, 2011
Gene Model: July 14th, 2011
8 months agoid1 indeterminate growth1: requires extended growth for flowering; vegetatively totipotent with gt1 and factors for perennialism
1.08
    Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: January 3rd, 2015
Variation: August 3rd, 2015
8 months agona1 nana plant1: short, erect dwarf; no response to gibberellins
3.06 - 3.08
 GRMZM2G449033
 Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: July 24th, 2012
Variation: December 22nd, 2016
Gene Model: December 20th, 2011
8 months agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
    Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: April 11th, 2007
Variation: August 20th, 2010
8 months agora3 ramosa3: branched inflorescence; mutant ears have abnormal long branches at their bases; trehalose biosynthesis
7.06
    Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: September 15th, 2013
Variation: December 3rd, 2010
8 months agowab1 Wavy auricles in blades1: dominant confers auricle tissue in blade portion of leafrecessive mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants
2.06 - 2.07
 GRMZM2G110242
 Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: September 14th, 2016
Variation: November 2nd, 2014
Gene Model: November 2nd, 2014
8 months agoub2 unbranched2: double mutant shows decrease in tassel branch number
 
    Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: December 18th, 2014
Variation: December 17th, 2014
8 months agophyB2 phytochromeB2: phyB2 mutant is early flowering. Double mutant with phyB1 is pale, narrow with elongated leaf blades and elongated internodes, and contains less anthocyanin in sheath tissues.
9.05
    Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: October 24th, 2007
Variation: January 11th, 2013
8 months agobif2 barren inflorescence2: recessive few-branched tassel, normally no pollen shed; variable expression on ear with 0-2 spikelets produced at each floral node
1.05
    Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400   AT2G34650 (TAIR) Reference: February 3rd, 2017
Gene Product: July 19th, 2012
Variation: October 23rd, 2013
8 months agoga2ox13 gibberellin 2-oxidase13:
 
 GRMZM2G031432
 Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: October 27th, 2014
Gene Model: October 30th, 2014
8 months agoconz1 constans1: homologous to photoperiod genes constans (co) from Arabiodopsis and heading date 1 (hd1) in rice. (Miller 2008)
9.03
    Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Variation: July 28th, 2008
8 months agoumc1811  :
1.06
 AC187262.4_FG007
     Variation: February 1st, 2017
Gene Model: February 1st, 2017
8 months agoumc2224  :
1.01
 GRMZM2G076062
     Variation: February 1st, 2017
Gene Model: February 1st, 2017
8 months agocsu3  : cDNA partially sequenced, weak homology to yeast heat shock protein 26, SwissProt P15992 and to leghemoglobin, GenBank accession M91075
1.05
 GRMZM2G162292
 Baysdorfer, C. 1993. Personal communication to MaizeDB     Reference: September 1st, 2003
Variation: February 15th, 2007
Gene Model: February 1st, 2017
8 months agoyab11 C2C2-YABBY-transcription factor 11: UMC 1989 map places umc67a on chromosome 5, but all other reports show chromosome 1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
 GRMZM2G141955
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: October 16th, 2015
Variation: January 31st, 2017
Gene Model: January 31st, 2017
8 months agobhlh3 bHLH-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.03
 GRMZM2G180452
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 31st, 2017
Gene Model: January 31st, 2017
8 months agockx6 cytokinin oxidase6:
1.08
 GRMZM2G404443
 Gu, R et al. 2010. J Plant Growth Reg 29:428-440     Reference: March 28th, 2014
Gene Product: April 4th, 2014
Gene Model: January 27th, 2017
8 months agonactf48 NAC-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
 GRMZM2G054252
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 27th, 2017
Gene Model: January 27th, 2017
8 months agospo1 topoisomerase-like enzyme1: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
 
 GRMZM2G129913
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Variation: June 20th, 2014
Gene Model: June 19th, 2014
8 months agospo2 topoisomerase-like enzyme2: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
 
 GRMZM5G890820
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Gene Model: June 19th, 2014
8 months agospo3 topoisomerase-like enzyme3: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
1.03
 GRMZM2G052581
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Variation: January 27th, 2017
Gene Model: June 19th, 2014
8 months agorad51b recombination protein51 gene b: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination
3.05
 GRMZM2G084762
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: August 12th, 2016
Variation: May 13th, 2012
Gene Model: June 19th, 2014
8 months agorad51a recombination protein51 gene a: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination
7.04
 GRMZM2G121543
 Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: August 12th, 2016
Variation: April 19th, 2012
Gene Model: June 19th, 2014
8 months agoglk6 G2-like-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.07
 GRMZM2G117193
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 26th, 2017
Gene Model: January 26th, 2017
8 months agol15 luteus15: like l4; lethal yellow seedling; chloroplast mRNA processing.Chloroplast PPR protein. Activates atpH translation. Stabilizes atpH and psaJ RNA termini. Binds atpI-atpH and psaJ-rpl33 intergenic regions. (A. Barkan, 2015)
6.02 - 6.03
 GRMZM2G177169
 Miranda, RG et al. 2017. RNA-Publ RNA Soc pp.doi: 10.1261/rna.059568.116   AT2G18940 (TAIR)
LOC_Os05g19380 (MSU/TIGR)
LOC_Os05g19380 (Gramene) 		Reference: January 25th, 2017
Gene Product: December 30th, 2015
Variation: November 7th, 2012
Gene Model: November 6th, 2012
8 months agoumc2243  : NCBI: putative actin family protein
1.11
 GRMZM2G053299
     Variation: January 25th, 2017
Gene Model: January 25th, 2017
8 months agoumc2244  : like Arabidopsis pantoate--beta-alanine ligase
1.12
 GRMZM5G876146
     Variation: January 25th, 2017
Gene Model: January 25th, 2017
9 months agoms10 male sterile10: like ms5; affected at microspore vacuolation
10.04 - 10.05
 GRMZM5G830329
 Somaratne, Y et al. 2017. Plant J pp.doi: 10.1111/tpj.13476   AT1G01280 (TAIR)
LOC_Os08g03682 (MSU/TIGR) 		Reference: January 14th, 2017
Gene Product: January 20th, 2017
Variation: January 19th, 2017
Gene Model: January 19th, 2017
9 months agoumc2237  : NCBI: cyclin-D4-2-like
1.07
 GRMZM2G133413
     Variation: January 19th, 2017
Gene Model: January 19th, 2017
9 months agoumc2234  :
1.06
 GRMZM2G441903
     Variation: January 18th, 2017
Gene Model: January 18th, 2017
9 months agoumc2235  :
1.06
 GRMZM2G074270
     Variation: January 18th, 2017
Gene Model: January 18th, 2017
9 months agobub1 budding unhibited by benzimidazoles homolog1:
 
 GRMZM2G105750
 Su, H et al. 2017. New Phytol pp.doi: 10.1111/nph.14415     Reference: January 16th, 2017
Gene Product: May 13th, 2014
Variation: January 16th, 2017
Gene Model: January 15th, 2017
9 months agobub3 budding unhibited by benzimidazoles homolog3: encodes WD40 repeat-like superfamily protein that is a mitotic checkpoint
9.02
 GRMZM5G899300
 Su, H et al. 2017. New Phytol pp.doi: 10.1111/nph.14415     Reference: January 16th, 2017
Variation: January 16th, 2017
Gene Model: January 15th, 2017
9 months agoumc2228  : NCBI: glucan endo-1,3-beta-glucosidase 4
1.04
 GRMZM2G125241
     Variation: January 10th, 2017
Gene Model: January 10th, 2017
9 months agoumc2229  : similar to Arabidopsis rhomboid -like 2
1.04
 GRMZM2G093962
     Variation: January 10th, 2017
Gene Model: January 10th, 2017
9 months agoplt3 phospholipid transfer protein homolog3:
3.06
 GRMZM2G126397
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: January 8th, 2017
Gene Model: January 6th, 2017
9 months agoms44 male sterile44: dominant Ms44 plants male sterile
4.08
 AC225127.3_FG003
 Fox, TW et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12689     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: January 6th, 2017
Gene Model: January 6th, 2017
9 months agoumc1664  : NCBI: putative bifunctional inhibitor/LTP/seed storage protein family
1.06
 GRMZM2G083725
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: December 2nd, 2016
Gene Model: December 2nd, 2016
9 months agoumc2226  :
1.02
 GRMZM2G114055
     Variation: January 6th, 2017
Gene Model: January 6th, 2017
9 months agoumc2227  : NCBI: similar to B. distachyon putative HLH DNA-binding domain superfamily protein (EHC Jun 2017)
1.04
 GRMZM2G412430
     Variation: January 6th, 2017
Gene Model: January 6th, 2017
9 months agomfs18 male flower specific18: cDNA sequence, associated with tassel glume vascular bundles
3.04
 EF517601.1_FG016
 Basse, C. 2005. Plant Physiol. 138:1774-1784     Reference: November 23rd, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 6th, 2017
9 months agoAY110426  : similar to Arabidopsis bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein
1.11
 GRMZM2G006047
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: July 29th, 2004
Gene Model: January 6th, 2017
9 months agonkd1 naked endosperm1: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
 
 GRMZM2G129261
 Gontarek, BC; Neelakandan, AK; Wu, H; Becraft, P. 2016. Plant Cell. 0:doi: 10.1105/tpc.16.00609     Reference: January 6th, 2017
Gene Product: January 3rd, 2015
Variation: January 3rd, 2015
Gene Model: January 2nd, 2015
9 months agonkd2 naked endosperm2: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
 
 GRMZM5G884137
 Gontarek, BC; Neelakandan, AK; Wu, H; Becraft, P. 2016. Plant Cell. 0:doi: 10.1105/tpc.16.00609     Reference: January 6th, 2017
Gene Product: January 3rd, 2015
Variation: January 3rd, 2015
Gene Model: January 2nd, 2015
9 months agoltp1 lipid transfer protein1:
 
 GRMZM2G320373
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: August 1st, 2016
9 months agoplt4 phospholipid transfer protein homolog4:
 
 GRMZM2G174680
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
9 months agoplt5 phospholipid transfer protein homolog5:
 
 GRMZM2G005991
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
9 months agoplt6 phospholipid transfer protein homolog6:
 
 GRMZM2G116167
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
9 months agonthr3 anther-specific protein 3:
7.03
 GRMZM2G073377
 Fox, TW et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12689     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: May 9th, 2009
Gene Model: July 28th, 2016
9 months agobetl9 basal endosperm transfer layer9: endosperm transfer cell specific protein regulated by mrp1 myb related protein1; RFLP gpm92
3.05
 GRMZM2G087413
 Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: October 8th, 2009
Gene Model: July 4th, 2014
9 months agoipe1 irregular pollen exine1: mutants are male sterile and exhibit a glossy outer anther surface, abnormal Ubish bodies, and defective pollen exine
1.00 - 1.05
 GRMZM2G434500
 Chen, X et al. 2017. Plant Physiol 173:307-325   AT1G12570 (TAIR) Reference: January 5th, 2017
Gene Product: November 16th, 2016
Variation: November 16th, 2016
Gene Model: November 16th, 2016
9 months agodek2 defective kernel2: discolored, scarred endosperm; lethal; cultured embryos green
1.06 - 1.12
 GRMZM2G110851
 Qi, WW et al. 2017. Genetics 205:239-249     Reference: January 4th, 2017
Gene Product: December 27th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
9 months agoub3 unbranched3: double mutant shows decrease in tassel branch number
 
    Du, YF et al. 2017. New Phytol pp.doi: 10.1111/nph.14391     Reference: January 4th, 2017
Gene Product: December 18th, 2014
Variation: December 17th, 2014
9 months agoumc2181  : similar to Arabidopsis heavy metal transport/detoxification domain-containing protein
1.08
 GRMZM2G008290
 Stuber, CW et al. 1992. Genetics 132:823-839     Reference: September 1st, 2003
Variation: January 4th, 2017
Gene Model: January 4th, 2017
9 months agohb36 Homeobox-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: homeodomain protein JUBEL1
1.10
 GRMZM2G396114
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 3rd, 2017
Gene Model: January 3rd, 2017
9 months agohb84 Homeobox-transcription factor 84: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI:putative POX domain/homeobox DNA-binding domain family protein
1.06
 GRMZM2G099319
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 30th, 2016
Gene Model: December 30th, 2016
9 months agoc3h45 C3H-transcription factor 345: NCBI: putative RNA-binding zinc finger family proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.similar to Zinc finger CCCH domain-containing protein of M. trunculata
1.04 - 1.04
 GRMZM2G003424
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 30th, 2016
Gene Model: December 30th, 2016
9 months agopolm2 polymerase II transcription-mediator2: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
9.08
 GRMZM5G844080
 Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
9 months agopolm3 polymerase II transcription-mediator3: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
9.03
 GRMZM2G053588
 Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
9 months agocdc2 cell division control protein2 homolog: cDNA sequence homologous to cdc2/cdc28 subfamily of serine/threonine protein kinases, complements yeast cdc28
1.01
 GRMZM2G008327
 Sabelli, PA et al. 2005. Maydica 50:485-496     Reference: June 24th, 2009
Gene Product: December 29th, 2016
Variation: April 23rd, 2010
Gene Model: March 30th, 2015
9 months agopolm1 polymerase II transcription-mediator1: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
 
 GRMZM2G114459
 Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
9 months agocdk8 cyclin dependent kinase8: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
5.03
 GRMZM2G166771
 Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
9 months agocyc12 cyclin12: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
7.03
 GRMZM2G408242
 Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: June 26th, 2009
Variation: December 29th, 2016
Gene Model: December 29th, 2016
9 months agoers14 ethylene receptor1-14:
5.01
 GRMZM2G102601
 Gallie, DR; Young, T. 2004. Mol Genet Genomics. 271:267-281     Reference: August 3rd, 2008
Variation: May 16th, 2014
Gene Model: December 28th, 2016
Recommended by Ed Coe:
January 8th, 2008
9 months agopex2 pollen extensin-like2: clone like pex1
4.01
 GRMZM2G478929
 Stratford, S et al. 2001. Plant Mol Biol 46:43-56     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
9 months agorxo1 reaction to X. oryzae1: necrotic or hypersensitive reaction to inoculant
6.00
 GRMZM2G334584
 Zhao, BY, et al. 2005. Proc Natl Acad Sci, USA. 102:15383-15388     Reference: May 22nd, 2009
Variation: May 13th, 2012
Gene Model: December 28th, 2016
9 months agoexpb2 beta expansin2: expressed specifically in the elongating region of maize primary root
1.05
 GRMZM2G021621
 Wu, YJ et al. 2001. Plant Physiol 126:1471-1479     Reference: May 21st, 2010
Gene Product: March 12th, 2008
Variation: December 28th, 2016
Gene Model: December 28th, 2016
9 months agorpl5a 60S ribosomal protein L5-1 homolog a: endosperm cDNA 5C05D11 (uaz189), similar to ribosomal protein
3.05
 GRMZM5G815894
 Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 9th, 2011
Gene Model: December 28th, 2016
9 months agoploc1 plastocyanin homolog1: leaf cDNA csu257, similar to plastocyanin
6.04
 GRMZM2G071450
 Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 27th, 2013
Gene Model: December 28th, 2016
9 months agocas1 cycloartenol synthase1: leaf cDNA csu265
4.10
 GRMZM2G065494
 Davis, G et al. 1996. Maize Genetics Conference Abstracts 38     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
9 months agoprl1 protease PrlC candidate1: endosperm cDNA 2C01C07, similar to bacterial oligopeptidase A
5.08
 GRMZM2G133919
 Shen, B; Carneiro, N; Torres-Jerez, I; Stevenson, B; McCreery, T; Helentjaris, T; Baysdorfer, C; Alm. 1994. Plant Mol Biol 26:1085-1101     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
9 months agoaaa1 adenosylmethionine aminotransferase1: endosperm cDNA 5C01E09 (uaz113) similar to bacterial biotin synthesis enzyme
2.02
 GRMZM5G817886
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
9 months agoras2 Ras-related protein2: Homolog of mammalian binding GTP rab2 proteins
10.04
 GRMZM2G173878
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 14th, 2011
Gene Model: December 28th, 2016
9 months agolhy1 late hypocotyl elongation protein ortholog1: myb transcription factor - core clock gene (Hayes et al. 2010)
10.03
 GRMZM2G474769
 Ko, DK, et al. 2016. PLoS Genetics. 12:e1006197     Reference: October 3rd, 2016
Gene Product: July 31st, 2016
Variation: December 28th, 2016
Gene Model: December 28th, 2016
9 months agorhn1 ras-related protein RHN1:
 
 GRMZM2G131254
 Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 14th, 2011
Gene Model: December 28th, 2016
9 months agoubi3 ubiquitin3: candidate gene for major plant and ear height QTL
 
 GRMZM2G014119
 Ding, XY et al. 2017. Euphytica 213:21   AT1G31340 (TAIR) Reference: December 28th, 2016
Gene Product: September 1st, 2003
Gene Model: December 28th, 2016
9 months agoost1 oligosaccharide transferase1: vegetative meristem cDNA 7C02F04 similar to an integral endoplasmic reticulum protein
7.02
 GRMZM2G462325
 Helentjaris, T. 1995. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
9 months agophm5822  :
2.02
    Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT1G79490 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
9 months agocbl3 calcineurin B-like3:
1.09
 GRMZM2G112672
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocrs4 chloroplast RNA splicing4: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits
 
 GRMZM2G481231
 Barkan, A. 2009. maize gene review DOI-crs4:unassigned     Reference: November 17th, 2009
Gene Product: September 15th, 2012
Variation: December 27th, 2016
Gene Model: July 15th, 2011
9 months agoumc1991  : Similar to Arabidopsis MATE efflux family protein (multidrug and toxic compound extrusion (MATE) family)NCBI: transparent testa 12 protein
1.08
 GRMZM5G842695
     Variation: December 27th, 2016
Gene Model: December 27th, 2016
9 months agogst20 glutathione transferase20:
3.08
 GRMZM2G447632
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: December 27th, 2016
9 months agogst40 glutathione transferase40:
1.09
 GRMZM2G054653
 McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: June 13th, 2014
Gene Model: December 27th, 2016
9 months agoltk2 leucine-rich transmembrane protein kinase2: belongs to a small gene family; ltk2 shares 98.6% nucleotide sequence homology with ltk3, and these genes could be products of a recent gene duplication located on chromosome 9L.
9.07
 GRMZM2G330907
 Li, ZH and Wurtzel, E. 1998. Plant Mol Biol 37:749-761     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 10th, 2013
Gene Model: December 27th, 2016
9 months agofdx1 ferredoxin1: chloroplast, light induced, N-terminal amino acid sequence of mature protein, cDNA sequence, SSR phi075
6.00
 GRMZM2G122337
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 27th, 2016
9 months agoppr*-59040 pentatricopeptide repeat*-59040: pentatricopeptide repeat-containing protein orthologous to At3g59040
 
 GRMZM2G005938
   At3g59040 (TAIR)
LOC_Os08g09270 (MSU/TIGR)
LOC_Os08g09270 (Gramene) 		Gene Product: December 27th, 2016
Variation: January 22nd, 2015
Gene Model: January 21st, 2015
9 months agoppr53 pentatricopeptide repeat53: mutants exhibit a range of chlorotic phenotypes; specifically reduce transcript levels of ndhA (cp) and rrn23 (cp)
 
 GRMZM2G438524
 Zoschke, R et al. 2016. Plant J 85:594-606   AT5G46580 (TAIR) Reference: April 28th, 2016
Gene Product: December 27th, 2016
Variation: December 9th, 2015
Gene Model: December 9th, 2015
9 months agopprsmr4 pentatricopeptide repeat smr4:
 
 GRMZM2G164202
 Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT2G17033 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
Gene Model: December 9th, 2015
9 months agoppr*-GRMZM2G475897 pentatricopeptide repeat*-GRMZM2G475897:
 
 GRMZM2G475897
 Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT1G18900 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
Gene Model: December 9th, 2015
9 months agoemp16 empty pericarp16: mutant homozyous kernels have empty pericarp and are non-viable.
 
 GRMZM2G060516
 Xiu, Z-H et al. 2016. Plant J pp.DOI: 10.1111/tpj.13122     Reference: January 16th, 2016
Gene Product: December 27th, 2016
Variation: January 16th, 2016
Gene Model: January 16th, 2016
9 months agodek35 defective kernel35: mutants have defective kernels
 
 GRMZM2G066749
 Chen, XZ et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.08.008     Reference: September 7th, 2016
Gene Product: December 27th, 2016
Variation: September 7th, 2016
Gene Model: September 7th, 2016
9 months agocbl11 calcineurin B-like11:
 
 GRMZM2G007555
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl2 calcineurin B-like2:
 
 GRMZM2G173424
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl5 calcineurin B-like5:
 
 GRMZM2G041729
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl7 calcineurin B-like7:
 
 GRMZM2G033680
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl8 calcineurin B-like8:
 
 GRMZM2G110080
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl12 calcineurin B-like12:
 
 GRMZM2G137751
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agocbl10 calcineurin B-like10:
 
 GRMZM2G116584
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
9 months agoppr521 pentatricopeptide repeat521:
 
 GRMZM2G337701
 Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: December 27th, 2016
Gene Model: December 26th, 2016
9 months agocrs3 chloroplast RNA splicing3: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits
 
 GRMZM2G053196
 Barkan, A. 2009. maize gene review DOI-crs4:unassigned     Reference: November 17th, 2009
Gene Product: September 15th, 2012
Gene Model: December 27th, 2016
9 months agocbl6 calcineurin B-like6:
10.02
 GRMZM2G010093
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Variation: March 31st, 2005
Gene Model: October 19th, 2016
9 months agobm3 brown midrib3: like bm1; has lowered activity of caffeic acid O-methyl transferase; application: modified lignin has improved digestibility in ruminants; silage corn with bm3 is in production. However, bm3 results in weaker stalks, reduced stover and grain yield, and in some cases reduced maturity; these effects appear genotype-specific
4.04
    Fornale, S et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw198     Reference: December 26th, 2016
Gene Product: February 16th, 2011
Variation: October 27th, 2015
9 months agorps8 (cp) 30S ribosomal protein S8 gene:
 
 GRMZM5G845244
 Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: September 1st, 2003
Gene Model: December 26th, 2016
9 months agopsbJ (cp)  :
 
 GRMZM5G834496
 Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: September 1st, 2003
Gene Model: December 26th, 2016
9 months agoomt1 Caffeoyl-CoA O-methyltransferase1:
6.02
 GRMZM2G127948
 Fornale, S et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw198     Reference: December 26th, 2016
Gene Product: January 5th, 2014
Variation: December 26th, 2016
Gene Model: September 17th, 2014
10 months agoumc1976  :
1.02
 GRMZM2G162535
     Variation: December 22nd, 2016
Gene Model: December 23rd, 2016
10 months agoumc1955  : NCBI: glycine-rich cell wall structural protein 2
1.08
 GRMZM2G067315
     Variation: December 22nd, 2016
Gene Model: December 22nd, 2016
10 months agocyc10 cyclin10: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
 GRMZM2G107377
 Garza-Aguilar, SM et al. 2016. Physiol Plant pp.doi: 10.1111/ppl.12537     Reference: December 21st, 2016
Gene Product: June 26th, 2009
Variation: December 21st, 2016
Gene Model: December 21st, 2016
10 months agocyc11 cyclin11: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
 GRMZM2G161382
 Garza-Aguilar, SM et al. 2016. Physiol Plant pp.doi: 10.1111/ppl.12537     Reference: December 21st, 2016
Gene Product: June 26th, 2009
Gene Model: December 21st, 2016
10 months agogst5 glutathione transferase5: cDNA, safener-induced; high activity with fluorodifen herbicide
1.11
 GRMZM2G308687
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: July 22nd, 2010
Gene Model: July 27th, 2016
10 months agogst6 glutathione transferase6: cDNA, functionally expressed in E. coli
7.01
 GRMZM2G129357
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: July 22nd, 2010
Gene Model: July 27th, 2016
10 months agogst7 glutathione transferase7: cDNA, functionally expressed in E. coli
3.05
 GRMZM2G028556
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 9th, 2010
Gene Model: July 27th, 2016
10 months agoumc1917  :
1.04
 AC213099.3_FG001
     Variation: December 20th, 2016
Gene Model: December 20th, 2016
10 months agogst8 glutathione transferase8:
 
 GRMZM2G156877
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst10 glutathione transferase10:
1.01
 GRMZM2G096153
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst11 glutathione transferase11:
1.01
 GRMZM2G119499
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst12 glutathione S-transferase12: One of 12 Type I GSTs typed by sequence similarity
1.01
 GRMZM2G096269
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: March 17th, 2006
Gene Model: July 27th, 2016
10 months agogst13 glutathione transferase13: cDNA; SSR umc2099
9.07
 GRMZM2G126781
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 6th, 2010
Gene Model: July 27th, 2016
10 months agogst14 glutathione transferase14:
1.05
 GRMZM2G175134
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst16 glutathione transferase16:
7.03
 GRMZM5G895383
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2015
10 months agogst18 glutathione transferase18:
3.05
 GRMZM2G019090
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: October 22nd, 2014
10 months agogst24 glutathione transferase24:
5.07
 GRMZM2G032856
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
10 months agogst25 glutathione transferase25:
9.08
 GRMZM2G161905
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst28 glutathione transferase28:
3.05
 GRMZM2G146475
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
10 months agogst30 glutathione transferase30:
1.04
 GRMZM2G044383
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 21st, 2010
Gene Model: July 27th, 2016
10 months agogst31 glutathione transferase31: glutathione S-transferase subunit 31; matches PCO132874 (in silico from AF244696) placed by overgo on chromosome 1
1.01
 GRMZM2G475059
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 21st, 2010
Gene Model: April 27th, 2016
10 months agogst32 glutathione transferase32:
1.04
 GRMZM2G041685
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst33 glutathione transferase33:
 
    Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
10 months agogst35 glutathione transferase35:
9.08
 GRMZM2G161891
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst23 glutathione transferase23: cDNA, SSR umc2098
7.02
 GRMZM2G416632
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
10 months agogst37 glutathione transferase37:
7.04
 GRMZM2G178079
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst39 glutathione transferase39:
1.05
 GRMZM2G028821
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst41 glutathione transferase41:
6.05
 GRMZM2G097989
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: September 1st, 2010
Gene Model: July 27th, 2016
10 months agogst42 glutathione transferase42:
1.04
 GRMZM2G025190
 Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
10 months agogst1 glutathione-S-transferase1: presence-absence of isozyme bands between inbred lines, members of a family of polymorphic bands; transcripts correlate with dimer isoforms; single copy in Southerns; SSRs phi080, phi015, umc1069
8.08 - 8.09
    Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: September 1st, 2003
10 months agogst3 glutathione transferase3: cDNA sequence, correspondence to amino terminal of maize GSTIII, low or single copy, transgenic expression in E. coli results in enzyme activity similar to maize GSTIII enzyme
3.05
    Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
10 months agogst4 glutathione S-transferase4: constitutive and major subunit;amino acid sequence, cDNA sequence, transgenic expression, single or low copy gene, SSR phi073.
3.05
    Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
10 months agoca2p6 CCAAT-HAP2-transcription factor 26:
1.08
 GRMZM5G829103
 Zhang, Z et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.08.020     Reference: August 8th, 2016
Gene Product: August 9th, 2016
Variation: December 17th, 2016
Gene Model: December 17th, 2016
10 months agobhlh132 bHLH-transcription factor 132: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.05
 GRMZM2G114873
 Rabissi, A et al. 2016. Plant Sci 253:1-12     Reference: December 15th, 2016
Gene Product: September 14th, 2016
Gene Model: September 12th, 2016
10 months agonyc1 non-yellow coloring1: plays an important role in chlorophyll content and other related traits, and different sites act on chlorophyll metabolism under different light intensities in maize seedlings
3.01
 GRMZM2G170013
 Chan, AN et al. 2017. Euphytica 213:12   AT4g13250 (TAIR)
LOC_Os01g12710 (MSU/TIGR)
Os01g0227100 (Gramene) 		Reference: December 15th, 2016
Gene Product: December 15th, 2016
Variation: December 15th, 2016
Gene Model: December 15th, 2016
10 months agoapx2 ascorbate peroxidase2: leaf cDNA, similar to plant cytosolic ascorbate peroxidase; sequence distinct from apx1
2.08
 GRMZM2G140667
 Hong, CY et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.12.064     Reference: December 14th, 2016
Gene Product: September 1st, 2003
Variation: February 16th, 2015
Gene Model: February 16th, 2015
Recommended by Ed Coe:
January 8th, 2008
10 months agoumc1849  : similar to TPR ( tetratricopeptide) domain containing protein
1.04
 GRMZM2G069618
     Variation: December 14th, 2016
Gene Model: December 14th, 2016
10 months agorel2 ramosa1 enhancer locus2: rel2 mutants dramatically increase the formation of long branches in ears of both ra1 and ra2 mutants
10.03
    Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Variation: January 13th, 2012
10 months agoumc1812  : similar to Arabidopsis yippee-like protein
1.06
 GRMZM2G169451
     Variation: September 1st, 2003
Gene Model: December 13th, 2016
10 months agolug3 leunig-related3:
1.12
 GRMZM2G036169
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug5 leunig-related5:
3.04
    Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Variation: September 25th, 2007
10 months agotpl1 topless-related1:
 
 GRMZM2G316967
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agotpl2 topless-related2:
 
 GRMZM2G030422
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug1 leunig-related1:
 
 GRMZM2G361398
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug4 leunig-related4:
 
 GRMZM2G097640
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug6 leunig-related6:
 
 GRMZM2G149708
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug7 leunig-related7:
 
 GRMZM2G111247
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug8 leunig-related8:
 
 GRMZM2G061186
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agolug2 leunig-related2:
5.08
 GRMZM2G079013
 Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
10 months agoumc1715  :
1.09
 GRMZM2G171559
     Variation: December 8th, 2016
Gene Model: December 8th, 2016
10 months agoumc1734  :
1.05
 GRMZM2G114667
     Variation: September 1st, 2003
Gene Model: December 8th, 2016
10 months agoumc1737  :
1.11
 GRMZM2G082312
     Variation: December 8th, 2016
Gene Model: December 8th, 2016
10 months agoumc1748  : similar to M. trunculata auxin-induced protein
1.06
 GRMZM2G386209
     Variation: December 8th, 2016
Gene Model: December 8th, 2016
10 months agoumc1709  :
1.06
 GRMZM2G159996
     Variation: December 7th, 2016
Gene Model: December 7th, 2016
10 months agoumc1711  :
1.02
 GRMZM2G107815
     Variation: December 7th, 2016
Gene Model: December 7th, 2016
10 months agoopr5 12-oxo-phytodienoic acid reductase5: Predicted to have cytoplasmic localization (Zhang et al. 2005)
2.04
 GRMZM2G087192
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: July 21st, 2008
Gene Model: November 27th, 2013
Recommended by Ed Coe:
May 1st, 2007
10 months agomir1 maize insect resistance1: single copy cDNA
6.02
    Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: August 9th, 2015
Variation: July 29th, 2016
10 months agozim28 ZIM-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.02
 GRMZM2G116614
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Variation: September 1st, 2003
Gene Model: December 6th, 2016
10 months agomyb100 MYB-transcription factor 100: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
 GRMZM2G143046
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 6th, 2016
Gene Model: December 6th, 2016
10 months agosci1 subtilisin-chymotrypsin inhibitor homolog1: cDNA from germinating embryo infected with Fusarium moniliforme; similar to subtilisin-chymotrypsin inhibitor
8.05
    Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Variation: August 25th, 2015
10 months agofht1 flavanone 3-hydroxylase1: (aka f3h) single copy cDNA similar to Antirrhinum homolog
2.01 - 2.02
    Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: June 8th, 2012
Variation: September 1st, 2003
10 months agomybr88 MYB-related-transcription factor 88: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.09
 GRMZM2G064328
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: December 6th, 2016
10 months agoaos1 allene oxide synthase1: expression induction by herbivory and methyl jasmonate
9.06
 GRMZM2G067225
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Variation: September 24th, 2010
Gene Model: October 29th, 2015
10 months agoopr3 12-oxo-phytodienoic acid reductase3:
 
 GRMZM2G156712
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: June 29th, 2012
Gene Model: November 27th, 2013
10 months agoopr4 12-oxo-phytodienoic acid reductase4: Cytoplasmic
8.05
    Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: November 5th, 2010
10 months agoaos2 allene oxide synthesis2:
 
 GRMZM2G072653
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Gene Model: October 29th, 2015
10 months agoacs2 1-aminocyclopropane-1-carboxylate synthase2:
2.02
 GRMZM2G164405
 Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: May 16th, 2016
Variation: May 3rd, 2007
Gene Model: January 21st, 2016
10 months agoexpa4 alpha-expansin4:
1.11
 GRMZM2G368886
 Wu, YJ et al. 2001. Plant Physiol 126:222-232     Reference: May 21st, 2010
Variation: December 1st, 2016
Gene Model: December 1st, 2016
10 months agoumc1626  : similar to Arabidopsis purple acid phosphatase 24
1.05
 GRMZM5G801886
     Variation: September 25th, 2007
Gene Model: November 30th, 2016
11 months agorf4 restorer of fertility4: dominant Rf4 restores fertility to cms-C; complementary with Rf5 and Rf6
8.01 - 8.01
    Liu, YM et al. 2016. PeerJ 4:e2719     Reference: November 23rd, 2016
Variation: September 1st, 2003
11 months agoemp4 empty pericarp4: mitochondrion pentatricopeptide repeat (PPR) protein involved in specific expression of mitochondrial transcripts; impaired differentiation of basal endosperm transfer cells
1.10
 GRMZM2G092198
 Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6   LOC_Os03g51840 (MSU/TIGR)
LOC_Os03g51840 (Gramene) 		Reference: November 21st, 2016
Gene Product: September 15th, 2012
Variation: November 21st, 2016
Gene Model: November 29th, 2011
11 months agoemp9 empty pericarp9:
 
    Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6     Reference: November 21st, 2016
Variation: November 21st, 2016
11 months agoemp8 empty pericarp8:
 
    Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6     Reference: November 21st, 2016
Variation: November 21st, 2016
11 months agoumc1605  : NCBI: ankyrin repeat domain-containing protein 2
1.12
 GRMZM5G821637
     Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agoumc1611  :
1.05
 GRMZM2G132077
     Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agorcc1 regulator of chromosome condensation1:
 
 GRMZM2G302245
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agoabk1 aurora b kinase1:
 
 GRMZM2G132116
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agocdc202 cell division cycle202:
 
 GRMZM2G130425
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agorcc2 regulator of chromosome condensation2:
 
 GRMZM2G003565
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agorcc3 regulator of chromosome condensation3:
 
 GRMZM2G135770
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
11 months agocdc201 cell division cycle201:
4.06
 GRMZM2G063192
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: March 31st, 2005
Gene Model: November 18th, 2016
11 months agoumc1590  :
1.06
 GRMZM2G176962
     Variation: November 17th, 2016
Gene Model: November 17th, 2016
11 months agoumc1601  : NCBI: protein trichome birefringence-like 28 NCBI: putative DUF231 domain containing family protein
1.05
 GRMZM2G038855
     Variation: November 17th, 2016
Gene Model: November 17th, 2016
11 months agoumc1538a  :
1.11
 GRMZM5G831951
     Variation: September 1st, 2003
Gene Model: November 16th, 2016
11 months agoumc1553  : NCBI type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like
1.11
 GRMZM2G371210
     Variation: September 1st, 2003
Gene Model: November 16th, 2016
11 months agoumc1558  : NCBI: similar to Arabidopsis major facilitator protein
1.05
 GRMZM2G047187
     Variation: November 16th, 2016
Gene Model: November 16th, 2016
11 months agoalf18 Alfin-like-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.03
 GRMZM2G008259
 Zhou, W et al. 2016. Genes Genom pp.DOI: 10.1007/s13258-016-0491-6     Reference: November 16th, 2016
Variation: September 25th, 2007
Gene Model: November 16th, 2016
11 months agonactf43 NAC-transcription factor43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: NAC domain-containing protein 67-like
1.05
 GRMZM2G082709
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: November 15th, 2016
11 months agoiaa4 Aux/IAA-transcription factor4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.10
 GRMZM2G159285
 Ludwig, YC et al. 2014. PLoS One 9:e107346     Reference: September 10th, 2014
Variation: November 15th, 2016
Gene Model: November 15th, 2016
11 months agoumc1500  : NCBI: DNA-binding protein HEXBP-like
1.11
 GRMZM2G069218
     Variation: September 1st, 2003
Gene Model: November 14th, 2016
11 months agosbt1 subtilisin1: expressed exclusively in the in the aleurone layer of the maize kernel within a short developmental time frame
 
 GRMZM2G437435
 Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
11 months agosbt2 subtilisin2: expressed in the in the basal kernel in very early stages of development; also weakly expressed in unpollinated female flowers.
 
 GRMZM2G039538
 Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
11 months agosbt3 subtilisin3: paralog of sbt2
 
 GRMZM2G363552
 Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
11 months agoumc1479  :
1.03
 GRMZM2G042032
     Variation: November 10th, 2016
Gene Model: November 10th, 2016
11 months agoumc1484  :
1.01
 GRMZM2G107532
     Variation: November 10th, 2016
Gene Model: November 10th, 2016
11 months agoumc1486  :
1.07
 GRMZM2G389567
     Variation: September 1st, 2003
Gene Model: November 10th, 2016
11 months agoumc1469  :
1.05
 GRMZM2G466982
     Variation: September 1st, 2003
Gene Model: November 9th, 2016
11 months agoumc1472  : NCBI: similar to Arabidopsis putative nucleolar protein 5-2
1.04
 GRMZM2G124576
     Variation: November 9th, 2016
Gene Model: November 9th, 2016
11 months agoumc1452  :
1.04 - 1.04
 GRMZM2G107463
     Variation: November 8th, 2016
Gene Model: November 8th, 2016
11 months agoumc1461  :
1.05
 AC202185.4_FG004
     Variation: September 1st, 2003
Gene Model: November 8th, 2016
11 months agoumc1467  :
1.02
 GRMZM2G134367
     Variation: November 8th, 2016
Gene Model: November 8th, 2016
11 months agoubl1 U6 biogenesis like1: plays an important role in kernel and seedling development by influencing pre-mRNA splicing
 
 GRMZM2G156575
 Li, JK et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.016     Reference: November 7th, 2016
Gene Product: November 8th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
11 months agomyb83 MYB-transcription factor 83: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.07
    Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: November 4th, 2016
11 months agoumc1421  : NCBI: pyruvate kinase isozyme A, chloroplastic-like
1.11
 GRMZM2G078200
     Variation: September 1st, 2003
Gene Model: November 4th, 2016
11 months agoumc1431  : NCBI: similar to Arabidopsis plantacyanin
1.09
 GRMZM2G004012
     Variation: November 4th, 2016
Gene Model: November 4th, 2016
11 months agoumc1446  : NCBI: fatty acid elongase
1.08
 GRMZM2G162508
     Variation: November 4th, 2016
Gene Model: November 4th, 2016
11 months agoumc1790a  : Identified as "hornerin" at NCBI
1.04
 GRMZM2G125304
     Variation: October 5th, 2016
Gene Model: November 4th, 2016
11 months agozmm6 Zea mays MADS6: single copy; identified by cDNA hybridization in situ; early expression in male and female inflorescences, differentially in one member of a spikelet-primordium pair
1.06
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: April 1st, 2011
Variation: August 8th, 2008
11 months agopebp5 phosphatidylethanolamine-binding protein:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: January 31st, 2011
11 months agopebp6 phosphatidylethanolamine-binding protein6:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 15th, 2010
11 months agopebp10 phosphatidylethanolamine-binding protein10:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 8th, 2010
11 months agopebp13 phosphatidylethanolamine-binding protein13:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 10th, 2010
11 months agopebp16 phosphatidylethanolamine-binding protein16:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 15th, 2010
11 months agopebp20 phosphatidylethanolamine-binding protein20:
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 13th, 2010
11 months agopebp24 phosphatidylethanolamine-binding protein24:
 
 GRMZM2G440005
 Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 14th, 2010
Gene Model: July 28th, 2016
11 months agopebp26 phosphatidylethanolamine-binding protein26:
 
 GRMZM2G400167
 Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 14th, 2010
Gene Model: July 28th, 2016
11 months agotsh4 tassel sheath4: tsh4 mutant tassels have one to five long tassel branches, instead of ~13 observed in non-mutant W22. In place of tassel branches, long bract leaves were present, clustered at the base of the tassel.
7.03
 GRMZM2G307588
 Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
Variation: October 8th, 2011
Gene Model: October 6th, 2011
11 months agosbp17 SBP-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
11 months agosbp20 SBP-transcription factor 20: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
11 months agosbp27 SBP-transcription factor 27: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
11 months agosbp29 SBP-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
11 months agosbp3 (GRASSIUS) SBP-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
    Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
11 months agozmm29 Zea mays MADS29: single copy gene that co-segregates and shares 97% nt sequence identity with zmm18; probably an ortholog of rice GLOBOSA-like gene, OSMADS4; strongly expressed in male and female inflorescences and developing kernels.
8.03
 GRMZM2G152862
 Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: September 1st, 2003
Variation: August 27th, 2013
Gene Model: July 2nd, 2014
11 months agoumc140a  :
1.09
 GRMZM2G108861
 Winkler, RG and Helentjaris, T. 1993. MNL 67:110-111     Reference: September 1st, 2003
Variation: November 2nd, 2016
Gene Model: November 2nd, 2016
11 months agofl1 floury endosperm1: (was o4) endosperm opaque, soft; dosage effect with fl1-ref allele, but o4 allele is recessive
2.04
 GRMZM2G094532
 Wang, GF et al. 2016. J Exp Bot pp.doi: 10.1093/jxb/erw396     Reference: October 31st, 2016
Gene Product: July 8th, 2013
Variation: September 16th, 2010
Gene Model: July 8th, 2013
11 months agosk1 silkless ears1: pistils abort, no silks
2.03 - 2.04
 GRMZM2G021786
 Hayward, AP et al. 2016. Sci Adv 2:e1600991   AT3G22250 (TAIR)
LOC_Os04g44354 (MSU/TIGR) 		Reference: October 31st, 2016
Gene Product: October 31st, 2016
Variation: October 31st, 2016
Gene Model: October 31st, 2016
11 months agoumc1403  : NCBI:putative glycosyl hydrolase family 10
1.03
 GRMZM2G108032
     Variation: October 29th, 2016
Gene Model: October 30th, 2016
11 months agosbp16 SBP-transcription factor16: NCBI: squamosa promoter-binding-like protein 15 Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
 GRMZM2G169270
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 18th, 2014
Variation: September 1st, 2003
Gene Model: October 29th, 2016
11 months agoumc1396  :
1.06
 GRMZM2G005652
     Variation: September 1st, 2003
Gene Model: October 28th, 2016
11 months agoumc1395  : NCBI: cyclin-D5-2-like
1.05
 GRMZM2G329655
     Variation: September 1st, 2003
Gene Model: October 27th, 2016
11 months agoumc1397  : similar to Arabidopsis mannose-1-phosphate guanylyltransferase
1.03
 GRMZM2G160506
     Variation: October 27th, 2016
Gene Model: October 27th, 2016
11 months agorth2 roothair defective2: root hairs elongate 1/5-1/4 of normal; plants are vigorous and show little nutritional deficiency
5.04 - 5.09
    Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Variation: September 1st, 2003
11 months agorth3 roothair defective3: like rth1, but "stocking cap" roothair initials under electron microscope
1.03
    Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Variation: June 30th, 2012
11 months agolhcb9 light harvesting chlorophyll binding protein9: cDNA sequence is a classII lhcb, unlike previously characterized lhcb genes which are classI (Viret et al 1993)
1.08
 GRMZM2G414192
 Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: January 8th, 2005
Variation: October 27th, 2016
Gene Model: October 27th, 2016
11 months agotps2 terpene synthase2:
 
 GRMZM2G046615
 Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: May 28th, 2012
Variation: May 28th, 2012
Gene Model: May 28th, 2012
11 months agotps3 terpene synthase3:
 
 GRMZM2G064406
 Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: May 28th, 2012
Variation: May 28th, 2012
Gene Model: May 28th, 2012
11 months agocyp19 cytochrome P-450 19:
 
 GRMZM2G102079
 Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: September 26th, 2016
Gene Model: September 26th, 2016
11 months agocyp20 cytochrome P-450 20:
 
 GRMZM2G139467
 Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: September 26th, 2016
Gene Model: September 26th, 2016
11 months agorth6 roothairless6: mutant roothairs do not elongate; encodes a D-type cellulose synthase
 
 GRMZM2G436299
 Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Gene Product: October 7th, 2016
Variation: October 7th, 2016
Gene Model: October 7th, 2016
11 months agoumc1386b  : NCBI: serine/threonine-protein kinase Nek2-like
1.05
 GRMZM2G052650
     Variation: October 27th, 2016
Gene Model: October 27th, 2016
11 months agoet*-N1322C etchedN1322C:
3.05 - 3.09
    Neuffer, MG and England, DJ. 1995. MNL 69:43-46     Reference: September 1st, 2003
Variation: October 26th, 2016
11 months agosudh1 succinate dehydrogenase1:
7.00
 GRMZM2G064799
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh2 succinate dehydrogenase2: chimeric protein, succinate dehydrogenase iron-sulfur protein and ribosomal protein S14, mitochondrial
4.05
 GRMZM2G302259
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: July 28th, 2016
11 months agoumc1374  : NCBI: similar to Arabidopsis 26S proteasome regulatory subunit N3
1.07 - 1.07
 GRMZM2G119761
     Variation: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh3 succinate dehydrogenase3:
 
 GRMZM2G056912
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh4 succinate dehydrogenase4:
 
 GRMZM2G079888
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh5 succinate dehydrogenase5:
 
 GRMZM2G109271
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh6 succinate dehydrogenase6:
 
 GRMZM2G398876
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh7 succinate dehydrogenase7:
 
 GRMZM2G134134
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh8 succinate dehydrogenase8:
 
 GRMZM2G023760
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh9 succinate dehydrogenase9:
 
 GRMZM2G160685
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh10 succinate dehydrogenase10:
 
 GRMZM2G076524
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh11 succinate dehydrogenase11:
 
 GRMZM2G306945
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
11 months agosudh12 succinate dehydrogenase12:
 
 GRMZM2G146965
 Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
12 months agoumc1323  : NCBI: F-box/LRR-repeat protein 17-like
1.05
 GRMZM2G100121
     Variation: October 18th, 2016
Gene Model: October 20th, 2016
12 months agoumc1331  : similar to glycine-rich RNA-binding protein 8 of Chlamydomonas
1.11
 GRMZM5G874478
     Variation: October 19th, 2016
Gene Model: October 20th, 2016
12 months agoumc1335  : similar to Arabidopsis ABC transporter G family member 35 (NCBI)
1.06 - 1.07
 GRMZM2G477872
     Variation: October 19th, 2016
Gene Model: October 20th, 2016
12 months agoumc1356  : NCBI: NEP1-interacting protein-like 1
1.07
 GRMZM2G112617
     Variation: October 20th, 2016
Gene Model: October 20th, 2016
12 months agomyb38 myb transcription factor38: cDNA isolated by homology to C1, sequence distinct from C1
 
 GRMZM2G084583
 Agarwal, T et al. 2016. Sci. Rep. 6:28502     Reference: June 23rd, 2016
Gene Product: September 1st, 2003
Variation: October 20th, 2016
Gene Model: February 23rd, 2015

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