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CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The most recent updates can be found on our curation site or by clicking the Most Recent Data option in the menu below.


         Recommended Genes


Most recent data | Six months | One year | All time

New or updated genes since one year ago. The cutoff date is August 20th, 2016

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
yesterdaywrky111 WRKY-transcription factor 111: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Hu, SL et al. 2017. Plant Sci 263:132-141     Reference: August 19th, 2017
Gene Product: July 24th, 2017
Variation: July 24th, 2017
yesterdaytar1 tryptophan aminotransferase related1:
6.05
GRMZM2G127160
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: June 4th, 2012
yesterdayvt2 vanishing tassel2: inflorescence development; TRP-depenedent auxin synthesis
 
GRMZM2G127308
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791   AT1G70560 (TAIR) Reference: August 19th, 2017
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
yesterdayyuc2 Yucca2:
 
GRMZM2G159393
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: September 12th, 2012
yesterdayyuc4 Yucca4: up-regulated by light irradiation in the 0-1mm tip region
 
GRMZM2G141383
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
yesterdayyuc7 yucca7:
 
GRMZM2G480386
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
yesterdayyuc8 yucca8:
 
GRMZM2G017193
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
yesterdayyuc9 yucca9:
 
GRMZM2G333478
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: August 19th, 2017
yesterdaytar2 tryptophan aminotransferase related2:
 
GRMZM2G066345
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 19th, 2017
yesterdaytar3 tryptophan aminotransferase related3:
6.05
GRMZM2G141810
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: April 30th, 2011
Gene Model: August 22nd, 2013
yesterdayyuc5 Yucca5: transcribed in the root apex (0-5mm)
7.02
GRMZM2G132489
Poulet, A; Kriechbaumer, V. 2017. Int J Mol Sci 18:1791     Reference: August 19th, 2017
Gene Product: September 12th, 2012
Gene Model: June 17th, 2016
2 days agozrp2 Zea root protein2: cDNA expressed in roots and stems
1.07
GRMZM2G106980
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: July 28th, 2016
2 days agoburp8 BURP domain-containing protein-RD22-like8:
4.05
GRMZM2G147756
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agopop1 putative organelle permease1 :
 
GRMZM2G078154
    Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp1 BURP domain-containing protein-RD22-like1: Water deficit caused an 18-fold increase in the expression; expression is not influenced by ABA
 
GRMZM2G446170
Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp2 BURP domain-containing protein-RD22-like2: Water deficit caused a 1.6-fold increase in the expression; expression up-regulated by ABA.
 
GRMZM5G800586
Phillips, K; Ludidi, N. 2017. Sci. Rep. 7:8821     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp3 BURP domain-containing protein-RD22-like3:
 
GRMZM2G032145
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp5 BURP domain-containing protein-RD22-like5:
 
GRMZM2G108422
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp6 BURP domain-containing protein-RD22-like6:
 
GRMZM2G113229
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp7 BURP domain-containing protein-RD22-like7:
 
GRMZM2G146665
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp9 BURP domain-containing protein-RD22-like9:
 
GRMZM2G406170
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
2 days agoburp4 BURP domain-containing protein-RD22-like4:
7.03
GRMZM2G078779
Gan, D et al. 2011. Mol Biol Rep 38:4553-4563     Reference: August 18th, 2017
Gene Product: August 18th, 2017
Variation: August 18th, 2017
Gene Model: August 18th, 2017
3 days agocsu323  : similar to Arabidopsis 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1.04
GRMZM2G036543
Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 17th, 2017
3 days agoumc1297  : similar to Arabidopsis haloacid dehalogenase-like hydrolase domain-containing protein
1.05
GRMZM2G086869
    Variation: October 12th, 2016
Gene Model: August 17th, 2017
4 days agoincw1 cell wall invertase1: full-length cDNA, similar to tobacco and carrot cell-wall invertase; Northerns specific to cell suspension and developing endosperm 28-32 DAP; expressed protein cross-reacts with antibodies to carrot cell-wall invertase; low copy number
5.04
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: May 27th, 2015
4 days agomn1 miniature seed1: small, somewhat defective kernel, fully viable; invertase reduced
2.04
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: April 13th, 2015
4 days agocsu452  :
1.04
GRMZM2G077897
    Variation: September 1st, 2003
Gene Model: August 16th, 2017
4 days agoles22 lesion22: (was Les*-J2552, les29) dominant leaf lesions,early-medium timing, small size, white color; porphyria
1.04
GRMZM2G044074
Mei, Y et al. 2016. Plant Physiol pp.DOI: 10.1104/pp.16.00172     Reference: May 3rd, 2016
Gene Product: September 1st, 2003
Variation: April 1st, 2015
Gene Model: August 16th, 2017
4 days agoumc1103  :
7.04
GRMZM2G414043
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Variation: August 16th, 2017
Gene Model: August 16th, 2017
4 days agosbp13 SBP-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: December 18th, 2014
4 days agohct12 hydroxycinnamoyltransferase12:
 
GRMZM2G179703
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708     Reference: August 16th, 2017
Gene Product: November 7th, 2015
Gene Model: May 18th, 2016
4 days agodek36 defective kernel36: mutant kernels have a small and collapsed appearance at maturity, with a drastic size reduction in both embryo and endosperm; encodes an E+ subgroup PPR protein
 
GRMZM5G892151
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   At4g21300 (TAIR) Reference: August 16th, 2017
Gene Product: December 27th, 2016
Variation: March 13th, 2017
Gene Model: March 13th, 2017
4 days agoincw5 invertase cell wall5:
 
GRMZM2G095725
Liu, J et al. 2017. Plant Physiol pp.DOI: 10.1104/pp.17.00708   LOC_Os04g33740 (MSU/TIGR) Reference: August 16th, 2017
Gene Product: January 14th, 2013
Variation: August 16th, 2017
Gene Model: August 16th, 2017
5 days agons2 narrow sheath2: duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: June 29th, 2005
5 days agowox9c WUSCHEL related homeobox 9c: late embryo in outer layer of suspensor through leaf 4 stage
 
GRMZM2G409881
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
5 days agowox9b WUSCHEL related homeobox 9b: expressed in late embryo stages;in suspensor and also, unlike wox9c, in the shoot apical meristem (SAM)
 
GRMZM2G031882
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: September 6th, 2007
Gene Model: December 21st, 2015
5 days agosyd1 splayed ATPase1:
6.05
GRMZM2G467799
Nelissen, H et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00269     Reference: July 2nd, 2015
Variation: September 1st, 2003
Gene Model: August 15th, 2017
5 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: February 20th, 2015
5 days agoatg13c autophagy13c:
2.03
GRMZM5G825909
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: July 29th, 2004
Gene Model: August 15th, 2017
5 days agowox9a WUSCHEL related homeobox 9a: Locus hb50 designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G133972
Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: January 31st, 2011
Gene Model: December 21st, 2015
5 days agopik1 phosphatidylinositol 3-kinase1:
4.05
   Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: September 1st, 2003
Variation: September 25th, 2007
5 days agowox4 wuschel-related homeobox4: cDNA ortholog of Arabidopsis wuschel-related homeobox gene
 
   Nardmann, J et al. 2007. Mol Biol Evol 24:2474-2484     Reference: August 15th, 2017
Variation: May 1st, 2016
5 days agoatg12 autophagy12: Mutants are phenotypically normal and fertile when grown under nutrient-rich conditions. However, when nitrogen-starved, seedling growth is severely arrested, and as the plants mature, they show enhanced leaf senescence and stunted ear development.
 
GRMZM5G842517
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
5 days agovps2 vacuolar protein sorting2:
 
GRMZM2G179662
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Gene Product: August 15th, 2017
Gene Model: August 15th, 2017
5 days agoatg8b autophagy8b:
10.06
GRMZM2G419694
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: March 31st, 2005
Gene Model: August 15th, 2017
5 days agoatg16L autophagy16L:
1.10
GRMZM2G078252
Li, F et al. 2015. Plant Cell 27:1389-1408     Reference: August 15th, 2017
Variation: August 15th, 2017
Gene Model: August 15th, 2017
6 days agozmm14 Zea mays MADS14: during spikelet development zmm4 probably works as a selector gene which is involved in distinguishing the upper and lower floret
1.02
GRMZM2G099522
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: August 28th, 2013
Gene Model: August 14th, 2017
6 days agodhar2 dehydroascorbate reductase like2:
 
GRMZM2G005710
    Gene Product: March 28th, 2013
Gene Model: August 14th, 2017
10 days agoc2 colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins
4.08
   Eloy, NB et al. 2016. Plant Physiol 173:998-1016     Reference: August 10th, 2017
Gene Product: September 1st, 2003
Variation: November 14th, 2013
10 days agoAY110435  :
6.05
AC204292.4_FG006
    Variation: July 29th, 2004
Gene Model: August 10th, 2017
12 days agoIDPC175  : Sequence shows similarity to Arabidopsis HSP18.2
1.03
GRMZM2G481529
    Variation: August 8th, 2017
Gene Model: August 8th, 2017
12 days agobnlg1953  : similar to Arabidopsis C2H2-like zinc finger protein
1.02
GRMZM2G171073
    Variation: September 1st, 2003
Gene Model: August 8th, 2017
12 days agodng1 DNA glycosylase superfamily protein1:
1.02
GRMZM2G005844
    Variation: August 8th, 2017
Gene Model: July 11th, 2017
12 days agommp66  : Similar to Arabidopsis and Medicago trunculata Phosphatidylinositol-4-phosphate 5-kinase
1.03
GRMZM2G073591
    Variation: August 8th, 2017
Gene Model: August 8th, 2017
12 days agorte1 rotten ear1: mutants show distinct defects in vegetative and reproductive development, eventually causing widespread sterility in its tassel and ear.
1.05
GRMZM2G166159
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: July 21st, 2014
Gene Model: July 19th, 2014
12 days agorte2 rotten ear2: mutants strongly enhance the phenotype of rte1 mutants in soils with low boron content, producing shorter plants that fail to form all reproductive structures
 
GRMZM2G082203
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
12 days agorte3 rotten ear3: phylogenetically related to Class II clade boron transporters
 
GRMZM2G051753
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Variation: June 24th, 2017
Gene Model: June 24th, 2017
12 days agorte4 rotten ear4: phylogenetically related to Class II clade boron transporters
 
GRMZM2G374989
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
12 days agorte5 rotten ear5: phylogenetically related to Class II clade boron transporters
 
GRMZM2G302559
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
12 days agorte6 rotten ear6: phylogenetically related to Class II clade boron transporters
 
GRMZM2G454327
Chatterjee, M et al. 2017. Genetics 206:2041-2051     Reference: August 8th, 2017
Gene Product: June 24th, 2017
Gene Model: June 24th, 2017
15 days agodhn13 dehydrin13:
1.09
GRMZM2G169372
Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Variation: October 13th, 2016
Gene Model: October 14th, 2016
15 days agodhn6 dehydrin6:
3.07
GRMZM2G031308
Chen, J et al. 2002. Unpublished submission to Genbank Jan 2002     Reference: July 15th, 2008
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
15 days agorps15 ribosomal proteinS15: cDNA sequences, SSR umc1564
5.02
GRMZM5G869564
    Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: August 5th, 2017
15 days agodhn3 dehydrin3:
4.06
GRMZM2G373522
    Gene Product: August 5th, 2017
Variation: June 18th, 2011
Gene Model: October 16th, 2016
15 days agodhn7 dehydrin7:
 
GRMZM2G002786
Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: August 5th, 2017
Variation: February 9th, 2014
Gene Model: July 27th, 2016
15 days agostk4 serine-threonine kinase4: Expression responds to available phosphate, and its expression up-regulated under phosphate starvation.
 
GRMZM2G156013
Azad, I; Alemzadeh, A. 2017. Molecular Cell Biology Research Communications 6:65-75     Reference: August 5th, 2017
Gene Product: May 13th, 2014
Variation: August 5th, 2017
Gene Model: August 5th, 2017
15 days agodhn14 dehydrin14:
 
GRMZM2G448511
Liu, Y et al. 2017. Sci. Rep. 7:7361     Reference: August 5th, 2017
Gene Product: August 5th, 2017
Gene Model: August 5th, 2017
16 days agoy1 yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb)
6.01
GRMZM2G300348
Swarts, KL et al. 2017. Science 357:512-515     Reference: August 4th, 2017
Gene Product: December 14th, 2011
Variation: August 26th, 2014
Gene Model: September 22nd, 2011
16 days agorpe1 Ribulose-phosphate 3-epimerase1:
1.02
       Variation: August 4th, 2017
16 days agommp135  : similar to Arabidopsis no pollen germination related 1
1.02
GRMZM2G015219
    Variation: August 4th, 2017
Gene Model: August 4th, 2017
16 days agoras11E1 ras-related protein11E1:
 
GRMZM2G164527
    Variation: January 24th, 2011
Gene Model: August 4th, 2017
18 days agoroa1 replication origin activator1: cDNA Z29368, homology with yeast and vertebrate DNA licensing activity; orthologs in barley and Arabidopsis, highly conserved
 
GRMZM2G100639
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Variation: January 21st, 2011
Gene Model: June 1st, 2017
18 days agomcm2 minichromosome maintenance2: a cell cycle gene regulated by tb1
3.05
GRMZM2G112074
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071   AT4G02060 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Variation: July 31st, 2017
Gene Model: July 30th, 2017
18 days agomcm1 minichromosome maintenance1:
 
GRMZM2G065205
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047   AT4G02060 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 30th, 2017
18 days agomcm6 minichromosome maintenance6: Essential for both vegetative as well as reproductive growth and development in plants.
 
GRMZM2G021069
Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G44635 (TAIR) Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
18 days agomcm7 minichromosome maintenance7:
 
GRMZM2G139894
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
18 days agomcm4 minichromosome maintenance4:
 
GRMZM2G066101
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
18 days agomcm5 minichromosome maintenance5:
5.08
GRMZM2G075978
Sabelli, PA et al. 2009. Proc Natl Acad Sci, USA 106:4042??4047     Reference: July 31st, 2017
Gene Product: August 2nd, 2017
Gene Model: July 31st, 2017
19 days agobnlg149  :
1.00
GRMZM5G833153
    Variation: September 1st, 2003
Gene Model: August 1st, 2017
19 days agokrp17 kinesin heavy chain17:
1.01
GRMZM2G092232
    Variation: September 1st, 2003
Gene Model: August 1st, 2017
19 days agoaic1 auxin import carrier1: cDNA encoding a protein with a deduced amino acid showing 73% identity to AtAUX1.
1.05
GRMZM2G129413
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 21st, 2015
19 days agopin4 PIN-formed protein4: auxin efflux carriter similar to Arabidopsis PIN1 (Forestan et al 2012), but from PIN clade not found in all flowering plants save for the Brassicacease (O'Connor 2014 et al
4.08
GRMZM2G171702
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
19 days agoaic2 auxin import carrier2:
 
GRMZM2G045057
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114   AT2G21050 (TAIR) Reference: August 1st, 2017
Gene Product: September 1st, 2003
Variation: August 1st, 2017
Gene Model: August 1st, 2017
19 days agopin2 PIN-formed protein2: see pin1
5.06
GRMZM2G074267
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: June 11th, 2007
Gene Model: June 7th, 2012
19 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
GRMZM2G398650
Huang, C-F et al. 2017. Proc Natl Acad Sci, USA pp.doi: 10.1073/pnas.1709171114     Reference: August 1st, 2017
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: June 7th, 2012
20 days agocg1 corngrass1: semidominant Cg1 plants have narrow leaves, extreme tilleringCg1 encodes two tandem miR156 genes that are overexpressed in the meristem and lateral organs. George Chuck, 2007
3.02
GRMZM2G022489
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: June 17th, 2016
Variation: August 25th, 2011
Gene Model: April 5th, 2013
Recommended by George Chuck:
September 25th, 2007
20 days agopcna2 proliferating cell nuclear antigen2: a cell cycle gene regulated by tb1
4.07
GRMZM2G108712
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 1st, 2003
Variation: August 23rd, 2014
Gene Model: August 23rd, 2014
Recommended by Ed Coe:
January 8th, 2008
20 days agogt1 grassy tillers1: numerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialismputative transcription factor that reduces branching, and is induced by shade
1.04
GRMZM2G005624
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
20 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
20 days agotu1 tunicate1: dominant Tu1 ears develop long glumes enclosing individual kernels; tassels develop large, coarse glumes and sex reversal; both inflorescences become grossly vegetative and sterile in homozygotes
4.08 - 4.08
GRMZM2G370777
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: June 12th, 2012
Variation: February 3rd, 2011
Gene Model: May 9th, 2012
20 days agonot1 neighbor of tga1: compared to tga1, expressed much higher in maize than teosinte; INDEL probe (Preston et al 2011)
 
AC233751.1_FG002
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
20 days agotga1 teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte
4.05
GRMZM2G101511
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: December 18th, 2014
Variation: May 7th, 2015
Gene Model: October 28th, 2011
20 days agophyB1 phytochromeB1: phyB1 mutants have elongated mesocotyl under red light. Double mutant with phyB2 is pale, narrow with elongated leaf blades, elongated internodes, less anthocyanin in sheath tissues, and earlier flowering time.
1.03
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: October 24th, 2007
Variation: February 1st, 2015
20 days agozap1 zea apetala homolog1:
2.10
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Variation: February 2nd, 2011
20 days agozmm2 Zea mays MADS2: cDNA similar to zag1 (Schmidt et al., 1993), and to AGAMOUS of Arabidopsis; zmm2 and zag1, like zmm1 and zag2, are possibly duplications phylogenetically; expression preferentially in the tassel
8.03
   Kelliher, T et al. 2014. Frontiers Plant Sci 5:347     Reference: August 8th, 2014
Gene Product: September 1st, 2003
Variation: July 31st, 2017
20 days agozag1 Zea AGAMOUS homolog1: amino acid sequence, deduced from cDNA to inflorescence mRNA, 61% identical to Arabidopsis floral homeotic gene protein AG1; expression strong in female inflorescence; possibly pt1; SSR umc1187
6.05
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: September 1st, 2003
Variation: January 2nd, 2015
20 days agozag2 Zea AGAMOUS homolog2: amino acid sequence, deduced from cDNA sequence, has 49% identity to Arabidopsis, floral homeotic gene product; expression restricted to female inflorescence; near ts4
3.05 - 3.05
   Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: April 1st, 2011
Variation: October 22nd, 2014
20 days agoyab12 C2C2-YABBY-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G167824
Studer, AJ et al. 2017. Genetics pp.doi: 10.1534/genetics.117.300071     Reference: July 31st, 2017
Gene Product: October 16th, 2015
Gene Model: July 3rd, 2012
20 days agofen1 flap endonuclease1: required for DNA repair
6.07
GRMZM2G121262
Dresselhaus, T et al. 2006. Plant Physiol 140:512-527   AT5G26680 (TAIR) Reference: July 31st, 2017
Gene Product: July 31st, 2017
Variation: July 31st, 2017
Gene Model: July 31st, 2017
24 days agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
   Tan, BC, et al. 2017. Genetics. 206:135-150     Reference: July 27th, 2017
Gene Product: September 20th, 2012
Variation: October 5th, 2012
24 days agohac101b histone acetyltransferase101b:
1.05
GRMZM2G335438
    Gene Product: November 6th, 2003
Variation: September 1st, 2003
Gene Model: July 27th, 2017
24 days agodrl2 drooping leaf2: mutant enhances the phenotype of ifa1 mutants (a.k.a. drl1)
9.06
GRMZM2G102218
Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 12th, 2017
Gene Model: October 16th, 2015
24 days agoifa1 indeterminate floral apex1: mutants have perturbed floral and inflorescence meristems as well as droopy leaves with increased angle
 
GRMZM2G088309
Strable, J, et al. 2017. Plant Cell. 0:doi: 10.1105/tpc.16.00477   AT1G69180 (TAIR)
LOC_Os03g11600 (MSU/TIGR)
Reference: July 27th, 2017
Gene Product: October 16th, 2015
Variation: July 13th, 2017
Gene Model: October 16th, 2015
24 days agohyd6 hydroxylase6: beta-carotene hydroxylase
 
GRMZM5G826824
Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
Gene Model: July 27th, 2017
24 days agoimd4 isopropylmalate dehydrogenase4:
 
GRMZM2G120857
    Gene Product: September 1st, 2003
Gene Model: July 27th, 2017
26 days agomyb3  : single copy; encodes WD-repeat protein
5.04
GRMZM2G099334
Carey, C; Strahle, JT; Selinger, D; Chandler, V. 2004. Plant Cell. 16:450-464     Reference: June 7th, 2004
Gene Product: July 25th, 2017
Variation: May 28th, 2015
Gene Model: May 28th, 2015
26 days agomyb89 MYB-transcription factor 89: homology to R2R3 Myb genes
 
GRMZM2G040924
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 24th, 2016
26 days agomybr36 MYB-related-transcription factor 36: single copy genomic; similar to R2R3 Myb genes
2.02
GRMZM2G014534
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 25th, 2017
Gene Model: June 23rd, 2016
26 days agomyb14 MYB-transcription factor 14: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: July 25th, 2017
26 days agoomt2 Caffeoyl CoA O-methyltransferase2:
9.02
GRMZM2G099363
Yang, Q et al. 2017. Nature Genetics pp.doi: 10.1038/ng.3919     Reference: July 25th, 2017
Gene Product: January 5th, 2014
Variation: May 13th, 2016
Gene Model: September 17th, 2014
26 days agofdx3 ferredoxin3: ubiquitous, cDNA clone, gene specific probe, amino acid sequence; SSR umc1064, pFD3
1.11
GRMZM2G053458
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 29th, 2015
Gene Model: July 25th, 2017
26 days agofbxl1 F-box domain and LRR containing protein1: encodes an F-box domain and a leucine-rich-repeat domain protein
 
GRMZM2G481291
Yang, Q et al. 2017. Nature Genetics pp.doi: 10.1038/ng.3919     Reference: July 25th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
26 days agorlk1 receptor-like protein kinase1: encodes an S-locus receptor-like protein kinase;
 
GRMZM2G099324
Yang, Q et al. 2017. Nature Genetics pp.doi: 10.1038/ng.3919     Reference: July 25th, 2017
Gene Product: July 1st, 2015
Variation: July 25th, 2017
Gene Model: July 25th, 2017
26 days agopipf1 Ping-Pong family plant transposase1: encodes a PIF/Ping-Pong family plant transposase
 
GRMZM2G440198
Yang, Q et al. 2017. Nature Genetics pp.doi: 10.1038/ng.3919     Reference: July 25th, 2017
Gene Product: July 25th, 2017
Variation: July 25th, 2017
Gene Model: July 25th, 2017
26 days agomyb45 MYB-transcription factor 45: single copy genomic clone asg8 contains myb motifNCBI: myb domain protein 4r1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.01
GRMZM2G051793
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: July 25th, 2017
Gene Model: April 7th, 2017
27 days agote1 terminal ear1: stalked ear appendages at tip; varying to infolded ears
3.05
   Mendes-Moreira, P et al. 2015. PLoS One 10:e0124543     Reference: April 30th, 2015
Gene Product: September 1st, 2003
Variation: July 24th, 2017
27 days agowrky122 WRKY-transcription factor 122: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Hong, CY et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.12.064     Reference: December 14th, 2016
Gene Product: July 24th, 2017
Variation: December 14th, 2016
27 days agowrky29 WRKY-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
27 days agowrky98 WRKY-transcription factor 98: NCBI: probable WRKY transcription factor 12 (similarity to Arabidpsis gene)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.06
GRMZM2G377217
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: July 24th, 2017
Variation: March 15th, 2017
Gene Model: March 15th, 2017
27 days agowrky16 WRKY-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.08
GRMZM2G063216
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: July 24th, 2017
Gene Model: December 6th, 2016
27 days agonl3 narrow leaf3: mutant leaves are ~12% narrower
 
   Brewbaker, JL. 2010. MNL 84:in press     Reference: July 24th, 2017
Variation: January 21st, 2011
27 days agolw5 lemon white5: Duplicate factor for lemon endosperm/white seedling with lw6 (Stinard, MNL 86).
 
   Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
27 days agolw6 lemon white6: Duplicate factor for lemon endosperm/white seedling with lw5 (Stinard, MNL 86).
 
   Stinard, PS. 2013. MNL 86:29-31     Reference: March 10th, 2014
Variation: July 24th, 2017
29 days agoga20ox1 gibberellin 20-oxidase1:
1.12
AC203966.5_FG005
Nelissen, H et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12801     Reference: July 22nd, 2017
Gene Product: October 28th, 2014
Gene Model: October 27th, 2014
30 days agobt1 brittle endosperm1: mature kernel collapsed, angular, often translucent and brittle (alleles sh3, sh5)
5.04
   Xiao, QL et al. 2017. FEBS J pp.doi: 10.1111/febs.14179     Reference: July 21st, 2017
Gene Product: February 24th, 2015
Variation: January 28th, 2014
31 days agobnlg2238  :
1.04
GRMZM2G016480
    Variation: September 1st, 2003
Gene Model: July 20th, 2017
31 days agobnlg2295  :
1.04
GRMZM2G143703
    Variation: September 29th, 2010
Gene Model: July 20th, 2017
31 days agoko1 kaurene oxidase1:
 
GRMZM2G059308
Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
31 days agoko2 kaurene oxidase2:
 
GRMZM2G161472
Mao, HJ et al. 2017. Biotechnol Lett pp.doi: 10.1007/s10529-017-2401-7     Reference: July 20th, 2017
Gene Product: October 27th, 2014
Gene Model: October 27th, 2014
32 days agocct1 CO CO-LIKE TIMING OF CAB1 protein domain1: photoperiod response locus; confers later flowering in teosintes under longer day lengths; many maize inbred lines, including some adapted to tropical regions, have cct1 alleles insensitive to photoperiod (Hung et al 2012)
 
GRMZM2G381691
Wang, C et al. 2017. New Phytol pp.doi: 10.1111/nph.14688   AT5G24930 (TAIR)
LOC_Os07g15770 (MSU/TIGR)
Os07g0261200 (Gramene)
Reference: July 19th, 2017
Gene Product: July 17th, 2012
Variation: July 19th, 2017
Gene Model: July 17th, 2012
33 days agolox3 lipoxygenase3:
3.06
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: November 14th, 2014
33 days agots1 tassel seed1: tassel pistillate and pendant; if removed, small ear with irregular kernel placement develops
2.04 - 2.05
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
33 days agolox10 lipoxygenase10: green leaf volatiles, circadian, herbivore defense; sequence predicts plastidic location; images show location in non-chlorophyll containing organelles
4.09
GRMZM2G018424
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 6th, 2014
Gene Model: October 23rd, 2013
33 days agolox6 lipoxygenase6:
2.02
GRMZM2G040095
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
33 days agolox1 lipoxygenase1: Full length cDNA is expressed in E. coli (Kim et al. 2003)
3.06
   Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: July 24th, 2008
33 days agolox2 lipoxygenase2:
3.06
GRMZM2G156861
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: July 18th, 2017
Gene Model: June 10th, 2014
33 days agolox4 lipoxygenase4:
1.09
GRMZM2G109056
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
33 days agolox5 lipoxygenase5:
5.02
GRMZM2G102760
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 11th, 2014
Gene Model: June 10th, 2014
33 days agolox7 lipoxygenase7:
10.04
GRMZM2G070092
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: April 23rd, 2009
Gene Model: June 10th, 2014
33 days agolox9 lipoxygenase9:
1.02
GRMZM2G017616
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 12th, 2014
Gene Model: October 23rd, 2013
33 days agolox11 lipoxygenase11:
5.04
GRMZM2G009479
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Variation: June 10th, 2014
Gene Model: June 10th, 2014
33 days agolox12 lipoxygenase12: single copy, required for resistance to Fusarium stalk and ear rot
3.04
GRMZM2G106748
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: November 13th, 2014
Variation: August 15th, 2014
Gene Model: June 10th, 2014
33 days agolox13 lipoxygenase13:
 
GRMZM5G822593
Ogunola, OF et al. 2017. PLoS One 12:e0181265     Reference: July 18th, 2017
Gene Product: June 11th, 2014
Gene Model: July 18th, 2017
36 days agopspb2 photosystem II oxygen evolving polypeptide2: sequence highly similar to OEC23 oxygen evolving complex protein of photosystem II; located peripheral to lumenal side of thylakoid (Huang et al 2013)
 
GRMZM2G047954
Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
36 days agopspb1 photosystem II oxygen evolving polypeptide1: sequence similar to OEC23 photosystem II polypeptide; located by Huang et al 2013 to thylakoid peripheral on lumen side
 
GRMZM2G016677
Huang, M et al. 2013. J Proteome Res 12:491-504     Reference: August 5th, 2014
Gene Product: September 1st, 2003
Gene Model: July 15th, 2017
37 days agobnlg1564  :
1.07
GRMZM5G821828
    Variation: September 1st, 2003
Gene Model: July 14th, 2017
38 days agoumc1627  : cDNA sequences; SSR umc1627; see also loci probed by umc171 and npi472
8.03
GRMZM2G156857
Sheen, J et al. 1987. Plant Mol Biol 9:217-226     Reference: September 1st, 2003
Variation: July 13th, 2017
Gene Model: July 14th, 2015
39 days agobnlg1484  :
1.03
GRMZM2G019567
    Variation: September 1st, 2003
Gene Model: July 12th, 2017
39 days agobnlg1556  :
1.07
GRMZM2G028726
    Variation: September 1st, 2003
Gene Model: July 12th, 2017
40 days agobnlg1014  :
1.01
GRMZM2G020548
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
40 days agobnlg1025  :
1.07
GRMZM2G078088
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
40 days agobnlg1331  :
1.09
GRMZM2G466385
    Variation: September 1st, 2003
Gene Model: July 11th, 2017
42 days agoelfg1 elongation factor gamma1: endosperm cDNA 5C04C04 (uaz161), similar to Trypanosoma translation factor
6.04
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 9th, 2017
42 days agoelfa11 elongation factor alpha11:
 
AC233866.1_FG006
    Variation: July 9th, 2017
Gene Model: July 8th, 2017
43 days agoms7 male sterile7: like ms2; tapetal cell dysfunction
7.02
GRMZM5G890224
Zhang, DF et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12786   AT5G22260 (TAIR)
LOC_Os09g27620 (MSU/TIGR)
Os09g0449000 (Gramene)
Reference: July 6th, 2017
Gene Product: July 8th, 2017
Variation: July 6th, 2017
Gene Model: July 6th, 2017
43 days agoiaa28 Aux/IAA-transcription factor 28: gene product physically interacts with LA1 (Dong et al 2013)Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Dong, Z, et al. 2013. Plant Physiol. 163:1306-1322     Reference: November 22nd, 2013
Variation: July 8th, 2017
43 days agodof47 C2C2-Dof-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Chen, Y; Cao, J. 2014. Plant Mol Biol Rep pp.doi: 10.1007/s11105-014-0835-9     Reference: November 26th, 2014
Variation: July 8th, 2017
43 days agoelfa1 elongation factor alpha1: (was csu116) multiple copies; leaf cDNA csu116, partial sequence identical to a tomato elongation factor
8.03
GRMZM2G151193
Berberich, T et al. 1995. Plant Mol Biol 29:611-615     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: July 8th, 2017
43 days agoeif2 elongation initiation factor2: etiolated leaf cDNA 6C02E11(uaz224) similar to eIF-2 gamma chain
7.04
GRMZM2G107654
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: July 8th, 2017
Gene Model: January 13th, 2015
43 days agocyp13 cytochrome P450 13: encodes CYP97A
 
GRMZM5G837869
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Variation: July 8th, 2017
Gene Model: April 8th, 2013
44 days agoccamk1 calcium/calmodulin dependent protein kinase1: involved in ABA signaling (Ma et al 2012)
 
GRMZM2G062772
Ma, F; et al. 2012. J Exp Bot. 63:4835-47     Reference: April 23rd, 2013
Gene Product: December 3rd, 2013
Variation: July 7th, 2017
Gene Model: April 23rd, 2013
44 days agoarftf11 ARF-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
44 days agoarftf23 ARF-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
44 days agoarftf26 ARF-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Petsch, KA et al. 2015. Plant Cell pp.doi: 10.1105/tpc.15.00194     Reference: July 27th, 2015
Variation: July 7th, 2017
44 days agofea4 fasciated ear4: Mutants are semidwarfed with fasciated ears and tassels as well as greatly enlarged vegetative and inflorescence meristems.
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: January 27th, 2015
Variation: July 7th, 2017
44 days agouce1 ubiquitin conjugating enzyme1: endosperm cDNA 2C06C11 (uaz102), similar to plant ubiquitin conjugating enzymes
1.08
GRMZM2G053764
Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 7th, 2017
Gene Model: July 7th, 2017
44 days agoimp1 importin1: leaf cDNA csu244 similar to importin
8.03
   Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 7th, 2017
44 days agombd119 methyl binding domain119:
1.06
GRMZM2G301098
Springer, N; Kaeppler, SM. 2005. Plant Physiol 138:92-104     Reference: February 3rd, 2010
Gene Product: December 24th, 2015
Variation: February 6th, 2010
Gene Model: July 7th, 2017
44 days agocax3 calcium exchanger3: Expression affected by ABP4, auxin, and Ca++. Homolog of Arabidopsis CAX1 involved in auxin transduction pathway.
3.09
GRMZM2G011592
Jurisic-Knezev, D; Bergougnoux, V; Milde, D; Fellner, M. 2014. Botany. 92:332-339     Reference: June 5th, 2014
Variation: July 7th, 2017
Gene Model: June 6th, 2014
44 days agouce6 ubiquitin conjugating enzyme6:
 
GRMZM2G018447
    Gene Product: September 1st, 2003
Variation: July 7th, 2017
Gene Model: July 7th, 2017
44 days agoao2 aldehyde oxidase2:
5.01
GRMZM5G899851
Owens, BF, et al. 2014. Genetics. 198:1699-1716     Reference: January 1st, 2015
Gene Product: October 4th, 2014
Gene Model: July 7th, 2017
44 days agoabh4 abscisic acid 8'-hydroxylase4:
7.02
GRMZM2G065928
Vallabhaneni, R; Wurtzel, E. 2010. Arch Biochem Biophys. 504:112-7     Reference: February 15th, 2013
Gene Product: February 15th, 2013
Variation: March 31st, 2005
Gene Model: July 7th, 2017
44 days agocenH3 centromeric histone H3:
6.06
GRMZM2G158526
Gent, JI; Wang, N; Dawe, RK. 2017. Genome Biol. 18:121     Reference: July 7th, 2017
Gene Product: December 24th, 2015
Variation: November 7th, 2012
Gene Model: October 24th, 2011
45 days agocpps2 copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005)
1.04
GRMZM2G044481
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 16th, 2012
Variation: December 28th, 2015
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
45 days agoga2ox1 gibberellin 2-oxidase1: Bolduc and Hake (Plant Cell 21:1647-58, 2009) identify this ga2ox as ga2ox1 by phylogeny. See Supplemental Figure 6. Comparison of syntenic regions containing ga2ox1 in different grasses. They also show that it is a direct target of KN1.
 
GRMZM2G078798
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 27th, 2014
Variation: November 20th, 2012
Gene Model: November 20th, 2012
45 days agobnl9.11b(lts)  :
1.04
GRMZM2G067371
    Gene Product: September 1st, 2003
Gene Model: July 6th, 2017
45 days agobhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G165042
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: July 6th, 2017
45 days agopif3 phytochrome interacting factor3: ortholog of Arabidopsis PIF3; nuclear localized protein; transgenic expression in rice suggest role in stress response (Gao Y et al 2015)
 
GRMZM2G387528
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT1G09530 (TAIR)
LOC_Os05g04740 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: September 14th, 2016
Gene Model: May 26th, 2015
45 days agoga20ox5 gibberellin 20-oxidase5:
 
GRMZM2G060940
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: October 28th, 2014
Variation: July 6th, 2017
Gene Model: October 27th, 2014
45 days agokao2 kaurenoic acid oxidase2:
 
GRMZM2G089803
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039     Reference: July 6th, 2017
Gene Product: August 15th, 2012
Gene Model: October 29th, 2014
45 days agobrc1 brassinosteroid catabolism1: member of BR catabolic gene family
 
GRMZM2G107322
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
45 days agobrc2 brassinosteroid catabolism2: member of BR catabolic gene family
 
GRMZM5G852663
Hu, SL et al. 2017. Frontiers Plant Sci 8:1039   AT2G26710 (TAIR)
LOC_Os02g11020 (MSU/TIGR)
Reference: July 6th, 2017
Gene Product: July 6th, 2017
Gene Model: July 6th, 2017
46 days agouaz248a(his3)  :
1.04
GRMZM2G176358
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 5th, 2017
Gene Model: July 5th, 2017
46 days agouaz248b(his3)  :
5.05
GRMZM2G176358
Shen, B; Carneiro, N; Torres-Jerez, I; Stevenson, B; McCreery, T; Helentjaris, T; Baysdorfer, C; Alm. 1994. Plant Mol Biol 26:1085-1101     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: July 5th, 2017
51 days agosdg110b  :
2.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
51 days agocrr8 cytokinin response regulator8:
1.02
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: April 25th, 2008
51 days agocrr2 cytokinin response regulator2: single copy, cDNA and genomic sequences; SSRs umc1569, umc1344; induced by cytokinin, and inorganic nitrogen
10.07
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: October 1st, 2015
51 days agocrr1 cytokinin response regulator1: single copy,cDNA and genomic sequences; induced in leaf by cytokinin, and inorganic nitrogen; SSR umc1622
2.01 - 2.01
GRMZM2G040736
Deji, A et al. 2002. Biosci Biotechnol Biochem 66: 1853-1858     Reference: July 14th, 2007
Gene Product: June 30th, 2017
Gene Model: October 23rd, 2013
51 days agoarr1 ARR-B-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agoarr2 ARR-B-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agoarr4 ARR-B-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agoarr5 ARR-B-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agoarr6 ARR-B-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agoarr7 ARR-B-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
51 days agosdg128 set domain gene128: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   LOC_Os09g04890 (MSU/TIGR) Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
51 days agomez1 enhancer of zeste1:
6.01
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: June 30th, 2017
Variation: July 3rd, 2015
51 days agomez2 enhancer of zeste2:
9.04
GRMZM5G875502
Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: July 28th, 2016
51 days agomez3 enhancer of zeste3:
1.03
GRMZM2G043484
Springer, N et al. 2002. Plant Physiol 128:1332-1345     Reference: January 5th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2014
Gene Model: September 2nd, 2014
51 days agosdg101 set domain gene101:
7.02
AC233961.1_FG001
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
51 days agosdg102 set domain gene102:
2.04
GRMZM2G147619
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg104 SET domain-containing protein SET104:
2.03
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
51 days agosdg105 set domain gene105:
8.05 - 8.05
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
51 days agosdg106 set domain gene106:
2.07
GRMZM2G409213
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg107 set domain gene107:
2.03
GRMZM2G357972
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg108 set domain gene108:
4.04
GRMZM2G149153
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg110a set domain gene110a:
7.02
GRMZM2G130910
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg111 set domain gene111:
6.06
GRMZM2G117458
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg113 set domain gene113:
3.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
51 days agosdg115 set domain gene115:
3.08
GRMZM2G033350
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg116 set domain gene116:
2.07
GRMZM2G105869
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg118 set domain gene118:
8.06
GRMZM2G054380
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg119 set domain gene119:
2.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: September 1st, 2003
51 days agosdg123 SET domain protein123: histone methylation; one of 3 with disrupted (S-ET) domains among 22 SET domain proteins
1.08
GRMZM2G080462
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: February 2nd, 2015
Gene Model: February 2nd, 2015
51 days agosdg129 set domain gene129:
5.03
GRMZM2G305124
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: September 1st, 2003
Gene Model: June 29th, 2017
51 days agosdg122 set domain gene122:
1.02
GRMZM2G091916
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
51 days agocrr7 cytokinin response regulator7:
 
GRMZM2G096171
Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
51 days agoatx3 arabidopsis trithorax homolog3:
 
GRMZM2G372928
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
51 days agoatx4 arabidopsis trithorax homolog4:
 
GRMZM2G085266
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
51 days agoatx5 arabidopsis trithorax homolog5:
 
GRMZM2G179814
Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g46700 (MSU/TIGR)
Reference: June 29th, 2017
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
51 days agosdg117 set domain gene117:
 
GRMZM2G172427
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
51 days agosdg127 set domain gene127:
 
GRMZM2G473138
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
51 days agosdg130 set domain gene130:
 
GRMZM2G457881
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: June 29th, 2017
Gene Model: June 29th, 2017
51 days agoarr8 ARR-B-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.08
GRMZM2G479110
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: June 30th, 2017
Variation: June 30th, 2017
Gene Model: June 30th, 2017
51 days agocrr5 cytokinin response regulator5:
3.05
   Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Variation: March 31st, 2005
51 days agosdg103 SET domain group 103:
 
GRMZM2G074094
Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Gene Model: June 29th, 2017
51 days agocrr4 cytokinin response regulator4:
8.06
GRMZM2G319187
Asakura, Y, et al. 2003. Plant Mol Biol. 52:331-341     Reference: August 9th, 2004
Gene Product: June 30th, 2017
Gene Model: December 19th, 2015
51 days agoasg75  : NCBI: similar to Arabidopsis lipase class 3 family protein
1.04
GRMZM5G882821
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: September 19th, 2009
Gene Model: June 30th, 2017
58 days agoali1 aladin1:
 
       Variation: June 23rd, 2017
65 days agoumc2236  : similar to Arabidopsis glutamate decarboxylase 1 based on LOC100501579
1.06
GRMZM2G017110
    Variation: June 16th, 2017
Gene Model: June 16th, 2017
66 days agoumc2230  : NCBI:probable xyloglucan endotransglucosylase/hydrolase protein 27
1.05
GRMZM2G070271
    Variation: January 10th, 2017
Gene Model: June 15th, 2017
66 days agoumc2231  : NCBI: vacuolar amino acid transporter 1-like
1.05
GRMZM2G017170
    Variation: January 10th, 2017
Gene Model: June 15th, 2017
67 days agoumc1948  :
1.01
GRMZM2G172758
    Variation: May 10th, 2016
Gene Model: June 14th, 2017
67 days agosirk1 sucrose-induced receptor kinase1: expression is altered in response to drought stress
 
GRMZM2G161664
Aquino, B et al. 2017. Frontiers Plant Sci pp.doi: 10.3389/fpls.2017.00852   AT5G10020 (TAIR) Reference: June 14th, 2017
Gene Product: July 1st, 2015
Gene Model: June 13th, 2017
68 days agoumc1603  :
1.05
GRMZM2G127739
    Variation: November 17th, 2016
Gene Model: June 13th, 2017
72 days agofha2 FHA-transcription factor 2:
1.06
GRMZM2G424241
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: June 9th, 2017
72 days agoumc1111  : Seed specific protein Bn15D14A
1.11
GRMZM2G163912
    Variation: September 21st, 2016
Gene Model: June 9th, 2017
72 days agoumc1123  :
1.06
GRMZM5G854901
    Variation: September 1st, 2003
Gene Model: June 9th, 2017
72 days agoumc1128  : CDPK-related kinase 3-like
1.07
GRMZM2G031893
    Variation: September 1st, 2003
Gene Model: June 9th, 2017
73 days agoAY110479  :
1.11
GRMZM2G087612
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
73 days agoAY110632  :
1.03
GRMZM2G032047
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
73 days agoAY110640  : similar to Arabidopsis RNA pseudouridine synthase 5
1.03
GRMZM2G158261
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
73 days agoBE639426  :
1.10
GRMZM2G301071
    Variation: July 29th, 2004
Gene Model: June 8th, 2017
74 days agohagtf3 GNAT-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: June 7th, 2017
74 days agoAY110052  :
1.03
GRMZM2G141799
    Variation: September 25th, 2007
Gene Model: June 7th, 2017
74 days agoAY110159  : similar to M. trunculata Chloroplast inner envelope protein
1.07 - 1.08
GRMZM5G888696
    Variation: July 29th, 2004
Gene Model: June 7th, 2017
74 days agoAY110296  : similar to M. trunculata Ubiquitin and WLM domain-containing protein
1.06
GRMZM2G115981
    Variation: March 21st, 2006
Gene Model: June 7th, 2017
74 days agoAY110396  :
1.05
GRMZM2G110572
    Variation: July 29th, 2004
Gene Model: June 7th, 2017
75 days agoAI855190  :
1.05
GRMZM2G443525
    Variation: July 29th, 2004
Gene Model: June 6th, 2017
75 days agoAY109916  :
1.12
GRMZM2G422649
    Variation: July 29th, 2004
Gene Model: June 6th, 2017
75 days agocap2 calcium pump2: paralog of cap1; calcium-transporting ATPase
1.03
GRMZM2G428096
Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: June 6th, 2017
Gene Model: June 6th, 2017
76 days agocat1 catalase1: electrophoretic mobility; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
5.03
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
76 days agosod4 superoxide dismutase4: electrophoretic mobility; cytosolic; Cu-Zn dimeric; intralocus hybrid bands occur; two similar sequences X17564 (sod4), X17565(sod4A)
1.04
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: February 12th, 2007
Variation: April 20th, 2005
76 days agocipk8 calcineurin B-like-interacting protein kinase8:
 
GRMZM2G383240
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: June 2nd, 2017
Variation: June 2nd, 2017
Gene Model: June 2nd, 2017
76 days agogsr1 glutathione reductase1: single copy leaf cDNA csu111, similar to pea glutathione reductase
1.01
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: January 30th, 2015
76 days agouce4 ubiquitin conjugating enzyme4:
2.01
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: July 29th, 2004
76 days agocbl1 calcineurin B-like1:
 
GRMZM2G107575
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
76 days agocbl9 calcineurin B-like9:
 
GRMZM2G015324
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
76 days agoapx4 ascorbate peroxidase4:
 
GRMZM2G316256
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: September 1st, 2003
Variation: June 5th, 2017
Gene Model: June 5th, 2017
76 days agoucp1 uncoupling protein1:
 
GRMZM5G852877
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
76 days agoucp2 uncoupling protein2:
 
GRMZM2G165629
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Gene Model: June 5th, 2017
76 days agoznf3 zinc finger protein3:
 
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
76 days agoznf4 zinc finger protein4:
 
GRMZM2G048154
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
76 days agoznf5 zinc finger protein5:
 
GRMZM2G001205
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
76 days agoznf6 zinc finger protein6:
 
GRMZM5G804618
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: April 4th, 2017
Gene Model: June 5th, 2017
76 days agocbl4 calcineurin B-like2:
6.06
GRMZM2G001221
Tai, F, et al. 2016. Plant Cell, Tissue and Organ Culture (PCTOC). 124:459-469     Reference: June 5th, 2017
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
76 days agompk3 MAP kinase3: transcript and protein activity upregulated by ABA and H2O2
1.03
GRMZM2G017792
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: July 9th, 2013
Variation: July 12th, 2013
Gene Model: July 9th, 2013
76 days agoucp3 uncoupling protein homolog3:
 
GRMZM2G000510
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: June 5th, 2017
Variation: June 5th, 2017
Gene Model: June 5th, 2017
78 days agoorc2 origin recognition complex2: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM2G117238
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
78 days agoorc4 origin recognition complex4: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM5G876520
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Gene Model: June 3rd, 2017
Recommended by Marty Sachs:
March 7th, 2007
78 days agocda1 cytidine deaminase1:
7.02
GRMZM2G082924
Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
78 days agocda2 cytidine deaminase2:
2.06
GRMZM2G008216
Xu, JH; Messing, J. 2006. BMC Genetics. 7:52     Reference: August 26th, 2008
Gene Product: August 26th, 2008
Variation: February 7th, 2009
Gene Model: June 3rd, 2017
78 days agohat1 histone acetyltransferase1: cDNA, genomic and peptide sequence; antibody cross-reactivity
7.02
GRMZM5G851405
Lusser, A et al. 1999. Nucl Acid Res 27:4427-4435     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 28th, 2009
Gene Model: June 3rd, 2017
78 days agomaf1 MFP1 attachment factor1: cDNA
 
GRMZM2G479245
Gindullis, F et al. 1999. Plant Cell 115:1755-1767     Reference: October 11th, 2010
Gene Product: September 1st, 2003
Gene Model: June 3rd, 2017
78 days agofcr1 ferric-chelate reductase (NADH)1: member of a multi-gene family
3.06
GRMZM2G133213
Bagnaresi, P et al. 1999. Biochem J 338:499-505     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: July 9th, 2008
Gene Model: June 3rd, 2017
78 days agohmt1 homocysteine S-methyltransferase 1:
 
   Ranocha, P et al. 2001. Plant J 25:575-584     Reference: September 1st, 2003
Gene Product: July 19th, 2004
Variation: June 3rd, 2017
78 days agoork1 outward rectifying potassium channel1:
4.05
GRMZM2G156255
Philippar, K, et al. 2003. J Biol Chem. 278:16973-81     Reference: July 14th, 2006
Gene Product: February 19th, 2008
Variation: February 19th, 2008
Gene Model: June 3rd, 2017
79 days agoorc3 origin recognition complex3: member of a complex having a role in recognition and binding to origins of DNA replication; evidence from yeast two-hybrid assays and expression profiles
 
GRMZM2G381822
Witmer, X et al. 2003. Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5. Nucl Acid Res 31:619-628     Reference: September 1st, 2003
Variation: November 6th, 2010
Gene Model: June 2nd, 2017
Recommended by Marty Sachs:
March 7th, 2007
79 days agotel2 telomere maintenance2:
 
GRMZM2G144166
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Gene Model: June 1st, 2017
79 days agohag101 histone acetyl transferase GNAT/MYST 101: single copy; enzyme activity confirmed by assay of recombinant protein
5.03
GRMZM2G046021
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: November 6th, 2003
Variation: June 2nd, 2017
Gene Model: July 27th, 2016
79 days agodek38 defective kernel38: mutants are embryonic lethal, has a defective basal endosperm transfer (BETL) layer, and results in a smaller seed with highly underdeveloped endosperm.
 
GRMZM2G048851
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170   At2g39910 (TAIR) Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: May 2nd, 2017
Gene Model: May 2nd, 2017
79 days agotti1 tel2-interacting protein1:
 
GRMZM2G056403
Garcia, NS et al. 2017. Proc Natl Acad Sci, USA 114:5165-5170     Reference: June 1st, 2017
Gene Product: June 2nd, 2017
Variation: June 1st, 2017
Gene Model: June 1st, 2017
80 days agoeng1 endo-1,3-1,4-beta-D-glucanase1: coleoptile enzyme, orthologous to rice enzyme; located in cell wall, IAA- stimulated coleoptile growth inhibited by antibody
4.05
GRMZM2G073079
Thomas, B et al. 1998. Plant Physiol 117: 1525     Reference: March 16th, 2006
Variation: May 20th, 2009
Gene Model: June 1st, 2017
Recommended by Ed Coe:
January 8th, 2008
80 days agorab30 responsive to abscisic acid30: cDNA and protein elicited by ABA
1.01
GRMZM2G472236
Burr, B et al. 1991. MNL 65:105-110     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: May 2nd, 2011
Gene Model: June 1st, 2017
80 days agomtl3 metallothionein3: cDNA highly expressed during microsporogenesis, one (or two) copies, high sequence homology with type 2 metallothionein.
4.05
GRMZM2G099340
Charbonnel-Campaa, L et al. 2000. Gene 254:199-208     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
80 days agohvp1 human viral protein homolog1: endosperm cDNA 5C02B04, similar to a virus transcription activator
9.02
GRMZM5G852396
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
80 days agosin1 sin homolog1: endosperm cDNA 5C01E06, similar to yeast SIN3
 
GRMZM2G319104
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 1st, 2017
80 days agosmk2 small kernel2: mutants are recessive embryo-lethal small kernel
4.10
GRMZM2G023528
Yang, Y-Z, et al. 2017. Plant Physiol. 0:doi: 10.1104/pp.16.01295     Reference: June 1st, 2017
Gene Product: April 14th, 2017
Variation: April 14th, 2017
Gene Model: April 14th, 2017
80 days agohxa102 histone acetyltransferase complex component102:
1.10
GRMZM2G177974
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: January 4th, 2005
Variation: September 29th, 2010
Gene Model: June 1st, 2017
80 days agoric1 ras-related protein RIC1:
 
GRMZM2G106960
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 12th, 2011
Gene Model: June 1st, 2017
80 days agoara3 ras-related protein ARA-3:
 
GRMZM2G061900
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
80 days agorgp2 ras-related protein RGP2:
 
GRMZM2G093186
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 17th, 2011
Gene Model: June 1st, 2017
80 days agosqsh1 squalene synthase homolog1: Designation as sqsh1 based on high homology to sqs1 sequence; existence of several cDNAs indicates a functional gene (EHC Jan 2011)
 
GRMZM2G029396
    Variation: January 27th, 2011
Gene Model: June 1st, 2017
80 days agocnh1 carbon-nitrogen hydrolase homolog1:
9.07
GRMZM2G169365
Guo, M; Rupe, M; Danilevskaya, O; Yang, X; Hut, ZH. 2003. Plant J. 36:30-44     Reference: November 12th, 2010
Variation: March 24th, 2011
Gene Model: June 1st, 2017
80 days agopsei5 cystatin5:
6.05
GRMZM2G024264
Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
80 days agopsei10 cystatin10:
8.06
GRMZM2G030717
Massonneau, A; Condamine, P; Wisniewski, J; Zivy, M; Rogowsky, P. 2005. Biochim Biophys Acta. 1729:186-199     Reference: February 20th, 2009
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: June 1st, 2017
80 days agorpl44 ribosomal protein L44: vegetative meristem cDNA 7C02A07
7.03
GRMZM2G009412
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: January 24th, 2009
Gene Model: June 1st, 2017
81 days agobk2 brittle stalk2: brittle plant parts after 4-leaf stage
9.04 - 9.05
GRMZM2G109326
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: March 6th, 2012
Variation: March 6th, 2012
Gene Model: March 5th, 2012
81 days agobt2 brittle endosperm2: like bt1; endosperm ADPG pyrophosphorylase subunit; with sh2 complements E. coli glgC
4.05
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: November 12th, 2013
81 days agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: November 4th, 2014
Variation: October 10th, 2014
81 days agowx1 waxy1: amylopectin (stained red by iodine) replaces amylose (blue staining) in endosperm and pollen; extensive allelic series; application: highly branched starch has gelling properties, used for food gels, adhesives, and other industrial purposes; SSRs phi022, 027, 061NCBI: granule-bound starch synthase 1, chloroplastic/amyloplastic
9.03
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: June 4th, 2008
Variation: March 4th, 2017
81 days agomrp1 Myb related protein1: transforms aleurone cells into endosperm transfer cells and required to maintain transfer cell phenotype
8.05
   Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
81 days agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
GRMZM2G137954
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   LOC_Os02g19820 (MSU/TIGR) Reference: May 31st, 2017
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
81 days agoubr1 ubiquitin receptor1: Orthologous to Arabidopsis DA1
 
GRMZM2G017845
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763     Reference: May 31st, 2017
Gene Product: October 11th, 2012
Variation: October 11th, 2012
Gene Model: October 10th, 2012
81 days agolimtf4 LIM-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
GRMZM2G099328
Xie, GN et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12763   AT4G36860 (TAIR) Reference: May 31st, 2017
Gene Product: May 31st, 2017
Variation: May 31st, 2017
Gene Model: May 31st, 2017
82 days agoAY103944  : similar to Arabidopsis poly(A) binding protein 8
2.04
GRMZM2G352129
    Variation: September 25th, 2007
Gene Model: May 30th, 2017
82 days agoAI714808  : similar to Arabidopsis protein phosphatase methylesterase 1
2.04
GRMZM2G005346
    Variation: July 29th, 2004
Gene Model: May 30th, 2017
82 days agoAW036917  :
6.05
GRMZM2G106218
    Variation: July 29th, 2004
Gene Model: May 30th, 2017
83 days agoereb94 AP2-EREBP-transcription factor 94: strongly expressed in the maize endosperm; might act as a key regulator of starch synthesis in maize (Li et al., 2017)
 
   Li, H et al. 2017. J Plant Physiol 216:11-16     Reference: May 29th, 2017
Variation: May 9th, 2017
84 days agomab27 math-btb27:
 
GRMZM2G161569
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 28th, 2017
Gene Model: February 14th, 2017
85 days agorap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
GRMZM2G700665
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 27th, 2017
Gene Model: November 20th, 2012
85 days agopebp8 phosphatidylethanolamine-binding protein8: florigen activity: complements Arabidopsis FT mutants, promoting flowering at short days. Requires functional id1 gene.(Lazakis et al 2011)
 
GRMZM2G179264
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: May 6th, 2011
Variation: June 19th, 2015
Gene Model: May 6th, 2011
85 days agod8 dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins.
1.09
GRMZM2G144744
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: February 12th, 2007
Variation: August 29th, 2007
Gene Model: May 11th, 2011
85 days agozfl1 zea floricaula/leafy1: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
10.06
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 20th, 2007
85 days agozfl2 Zea floricaula leafy2: zfl1 and zfl2 double mutants exhibit a disruption of floral organ identity and patterning, as well as defects in inflorescence architecture and in the vegetative to reproductive phase transition.
2.02
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: October 9th, 2014
85 days agodlf1 delayed flowering1: tall late plant with additional nodes and leaves at flowering; no apparent response to day length
 
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Variation: February 6th, 2011
85 days agomads1 MADS1: transcripts detected in egg cells and invivo zygotes of maize, also expressed in synergids and antipodal cells. during flower development expressed in all ear spikelet organ primordia at intermediate stages
9.07
   Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: September 1st, 2003
Variation: April 15th, 2008
85 days agocca1 circadian clock associated1: myb transcription factor - clock gene
 
GRMZM2G014902
Romero-Navarro, JA et al. 2017. Nature Genetics 49:476-480     Reference: May 27th, 2017
Gene Product: July 31st, 2016
Variation: March 18th, 2011
Gene Model: July 30th, 2016
86 days agomab20 math-btb20:
 
GRMZM2G009724
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 26th, 2017
Gene Model: February 14th, 2017
86 days agocki4 cyclin-dependent kinase inhibitor4:
 
GRMZM2G358931
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 26th, 2017
Gene Model: March 7th, 2017
88 days agomab1 math-btb1:
 
AC195147.3_FG001
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
88 days agomab15 math-btb15:
 
GRMZM2G148213
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 24th, 2017
Gene Model: February 13th, 2017
89 days agosca1 short chain alcohol dehydrogenase1: single copy leaf cDNA, csu149, similar to ts2
5.00
GRMZM2G332976
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 1st, 2003
Variation: July 27th, 2013
Gene Model: June 23rd, 2015
89 days agoao3 aldehyde oxidase3: associated with ABA levels in silks of water-stressed plants (Setter et al 2011)
1.11
GRMZM2G019799
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 5th, 2013
Gene Model: February 5th, 2013
89 days agozep1 zeaxanthin epoxidase1:
2.04
GRMZM2G127139
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: August 29th, 2011
Gene Model: April 8th, 2013
89 days agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
GRMZM2G012966
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: October 3rd, 2011
Gene Model: October 3rd, 2011
89 days agolw1 lemon white1: white seedling, pale yellow endosperm; some alleles have zebra or luteus phenotypes
1.10
GRMZM2G027059
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 20th, 2012
Variation: March 10th, 2016
Gene Model: January 8th, 2014
89 days agops1 pink scutellum1: (aka vp7, lyc1, lycB) some alleles viviparous; endosperm and scutellum pink, seedling white with pink flush
5.04 - 5.04
   Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: March 30th, 2011
89 days agovp5 viviparous5: like vp2cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070
1.02 - 1.02
   Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Variation: March 4th, 2014
89 days agovp9 viviparous9: (was y7, z1, zds1) like vp2; vp9-4889 dormant, pale aleurone, pale green seedling
7.02
GRMZM2G454952
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Variation: March 25th, 2017
Gene Model: March 8th, 2013
89 days agoaox1 alternative oxidase1: primers give PCR product closely similar to alternative oxidase in other species
2.02
AC233960.1_FG002
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: February 22nd, 2012
Gene Model: February 17th, 2012
89 days agocmk1 cytidine methyl kinase1: encodes 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [a.k.a. 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase]
3.06
GRMZM5G859195
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 9th, 2014
Gene Model: October 4th, 2014
89 days agonced3 nine-cis-epoxycarotenoid dioxygenase3:
 
GRMZM5G858784
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: September 20th, 2012
89 days agonced5 nine-cis-epoxycarotenoid dioxygenase5:
 
GRMZM2G417954
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 1st, 2011
Gene Model: September 20th, 2012
89 days agodxs3 deoxy xylulose synthase3:
 
GRMZM2G173641
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
89 days agohds1 hydroxymethylbutenyl diphosphate synthase1:
 
GRMZM2G137409
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: December 10th, 2011
89 days agoaox2 alternative oxidase2: primers give PCR product closely similar to alternative oxidase in other species
 
GRMZM2G125669
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: February 22nd, 2012
Variation: March 1st, 2012
Gene Model: February 17th, 2012
89 days agoccd8 carotenoid cleavage dioxygenase8: Mutants have mild branching, short stature, small ear size, and narrow-stalk
 
GRMZM2G446858
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Variation: September 21st, 2012
Gene Model: September 20th, 2012
89 days agocrti1 carotene isomerase1: enclodes carotene isomerase1
 
GRMZM2G108457
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
89 days agocrti2 carotene isomerase2: encodes carotene isomerase2
 
GRMZM2G106531
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
89 days agoggps1 geranylgeranyl pyrophosphate synthase1: part of multigene family encoding geranylgeranyl diphosphate synthase
 
AC194970.5_FG001
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
89 days agoggps2 geranylgeranyl pyrophosphate synthase2: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G102550
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
89 days agoggps3 geranylgeranyl pyrophosphate synthase3: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G102550
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
89 days agoippi1 isopentenyl pyrophosphate isomerase1: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
GRMZM2G108285
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
89 days agoippi2 isopentenyl pyrophosphate isomerase2: part of multigene family encoding isopentenyl pyrophosphate isomerase
 
GRMZM2G145029
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: April 8th, 2013
89 days agoggps4 geranylgeranyl pyrophosphate synthase4: part of multigene family encoding geranylgeranyl diphosphate synthase
 
GRMZM2G005909
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: April 8th, 2013
Gene Model: April 8th, 2013
89 days agocyp14 cytochrome P450 14: encodes CYP97C
 
GRMZM5G837869
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: June 3rd, 2015
Variation: June 3rd, 2015
Gene Model: April 8th, 2013
89 days agovde1 violaxanthin de-epoxidase1: Encodes violaxanthin de-epoxidase. Based on sequence similarity to Arabiodopsis gene.
 
GRMZM2G027219
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 13th, 2011
Gene Model: April 9th, 2013
89 days agocrti3 carotene isomerase3: enclodes carotene isomerase
 
GRMZM2G144273
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Gene Model: September 29th, 2014
89 days agonced2 nine-cis-epoxycarotenoid dioxygenase2:
 
GRMZM2G407181
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
89 days agonced6 nine-cis-epoxycarotenoid dioxygenase6:
 
GRMZM2G110192
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
89 days agonced8 nine-cis-epoxycarotenoid dioxygenase8:
 
GRMZM2G150363
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
89 days agonced9 nine-cis-epoxycarotenoid dioxygenase9:
 
GRMZM5G838285
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
89 days agoccd7 carotenoid cleavage dioxygenase7:
 
GRMZM2G158657
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851   AT2G44990 (TAIR) Reference: May 23rd, 2017
Gene Product: September 20th, 2012
Gene Model: October 4th, 2014
89 days agomecs1 methyl erythritol cyclodiphosphate synthase1:
 
GRMZM5G835542
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
89 days agomecs2 methyl erythritol cyclodiphosphate synthase2:
 
AC209374.4_FG002
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: October 4th, 2014
Gene Model: October 4th, 2014
89 days agomab24 math-btb24:
 
GRMZM2G103251
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
89 days agomab25 math-btb25:
 
GRMZM2G088086
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
89 days agomab26 math-btb26:
 
GRMZM2G161610
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 23rd, 2017
Gene Model: February 14th, 2017
89 days agodxs1 deoxy xylulose synthase 1: leaf specific; function inferred from Medicago trunculata gene sequence and expression pattern (Walter 2002)
6.05
GRMZM2G137151
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: June 20th, 2012
Gene Model: December 9th, 2011
89 days agodxs2 deoxy xylulose synthase 2: root specific; function inferred from sequence and expression pattern comparison with Medicago trunculata genes
9.03
GRMZM2G493395
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
89 days agodxr1 deoxy xylulose reductoisomerase1: enzyme catalyzes the first committed step of the plastidial pathway to apocarotenoids during mycorrhizal establishment
3.04
GRMZM2G056975
Gonzalez-Jorge, S et al. 2016. Plant Physiol 171:1837-1851     Reference: May 23rd, 2017
Gene Product: December 10th, 2011
Variation: May 11th, 2005
Gene Model: December 9th, 2011
91 days agoptac14 plastid transcriptionally active14: Ortholog of Arabidopsis PTAC14. Associates with Plastid Encoded RNA polymerase (PEP). Required for PEP-mediated transcription. (A. Barkan, 2015)ortholog of Arabidopsis PTAC14, a PEP-associated protein, required for PEP-mediated transcription; cpRNA defects in maize similar to other PEP-deficient mutants
 
GRMZM5G807767
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: May 21st, 2017
Gene Model: February 17th, 2015
91 days agoppr102 pentatricopeptide repeat102:
 
GRMZM2G012174
  At5g50280 (TAIR)
LOC_Os05g22870 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
91 days agoznfn1 zinc finger protein1:
 
GRMZM2G086277
  At5g52010 (TAIR)
LOC_Os06g07020 (MSU/TIGR)
Gene Product: April 4th, 2017
Gene Model: May 21st, 2017
91 days agoppr36 pentatricopeptide repeat36:
 
GRMZM2G333678
  AT4G19191 (TAIR)
LOC_Os11g14980 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
91 days agoppr61 pentatricopeptide repeat61:
 
GRMZM2G341479
  AT1G09220 (TAIR)
LOC_Os02g49830 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 21st, 2017
3 months agopsa2 photosystemI2: thylakoid lumen protein with protein disulfided isomerase activity; mutants lack photosystem I core complex polypeptidesDnaJ-type zinc finger domain protein found in thylakoid lumen. Required for Photosystem I assembly. (A. Barkan, 2015)
 
GRMZM2G021687
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2014
Gene Model: September 18th, 2014
3 months agopsa3 photosystemI3: Mutants have a pale green seedling phenotype; lacks photosystem I core complex polypeptides
 
GRMZM2G051403
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT3G55250 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
3 months agohcf148 high chlorophyll fluorescence148: Ortholog of Arabidopsis Y3IP1. PSI assembly factor, cooperates with Ycf3. (A. Barkan, 2015)mutants lack photosystem I, pale green seedling lethal; the Arabidopsis ortholog, Y3IP1, is a PSI assembly factor and cooperates with Ycf3
3.06
GRMZM2G002165
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524     Reference: May 20th, 2017
Variation: December 30th, 2015
Gene Model: February 17th, 2015
3 months agopyg7 pale yellowgreen7: mutants are pale yellow green; encodes an assembly factor that interacts with PSA3
 
GRMZM5G809292
Shen, J et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.00524   AT1G22700 (TAIR) Reference: May 20th, 2017
Gene Product: May 20th, 2017
Variation: May 20th, 2017
Gene Model: May 20th, 2017
3 months agoppr6 pentatricopeptide repeat6:
 
GRMZM2G093291
  At5g27270 (TAIR)
LOC_Os06g02120 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
3 months agoppr13 pentatricopeptide repeat13:
 
GRMZM2G099604
  At2g02980 (TAIR)
LOC_Os03g58100 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
3 months agoppr100 pentatricopeptide repeat100:
 
GRMZM2G428579
  At2g01860 (TAIR)
LOC_Os02g02590 (MSU/TIGR)
Gene Product: December 27th, 2016
Gene Model: May 20th, 2017
3 months agoak2 ankyrin repeat protein2:
4.10
GRMZM2G019838
  At5g40160 (TAIR)
LOC_Os06g13000 (MSU/TIGR)
Variation: September 25th, 2007
Gene Model: May 20th, 2017
3 months agomab17 math-btb17:
 
GRMZM2G166049
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 17th, 2017
Gene Model: February 14th, 2017
3 months agocki2 cyclin-dependent kinase inhibitor2:
 
GRMZM2G037926
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 17th, 2017
Gene Model: March 7th, 2017
3 months agoumc1509  : NCBI: similar to Arabidopsis PATATIN-like protein 5
4.02
GRMZM2G154523
    Variation: May 16th, 2017
Gene Model: May 16th, 2017
3 months agostk3 serine-threonine kinase3: pollen-specific expression
 
GRMZM2G301647
Wang, H et al. 2017. Genome pp.doi: 10.1139/gen-2016-0089     Reference: January 9th, 2017
Gene Product: May 13th, 2014
Variation: May 16th, 2017
Gene Model: January 9th, 2017
3 months agochlh1 Mg chelatase subunit H 1:
 
GRMZM2G323024
Zoschke, R; Chotewutmontri, P; Barkan, A. 2017. Adv Frontiers Plant Sci. 8:385   AT5G13630 (TAIR)
LOC_Os03g20700 (MSU/TIGR)
Reference: May 15th, 2017
Gene Product: June 11th, 2007
Gene Model: May 15th, 2017
3 months agorpl16 (cp) 50S ribosomal protein L16 gene:
 
   Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288     Reference: May 15th, 2017
Gene Product: September 1st, 2003
3 months agoppr103 pentatricopeptide repeat-containing protein103: required for the accumulation of plastid ribosomes
 
GRMZM2G170896
Hammani, K et al. 2016. Nucl Acid Res 44:4278-4288   AT5G03800 (TAIR) Reference: May 15th, 2017
Gene Product: December 27th, 2016
Variation: April 21st, 2016
Gene Model: April 21st, 2016
3 months agopin15 PIN-formed protein15: similar to rice OsPIN1b and OsPIN1d
 
GRMZM2G403601
Li, ZX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12751   LOC_Os11g04190 (MSU/TIGR) Reference: May 13th, 2017
Gene Product: April 21st, 2014
Gene Model: May 13th, 2017
3 months agodmc1 disrupted meiotic cDNA homolog1:
 
GRMZM2G109618
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 12th, 2017
Gene Model: January 27th, 2017
3 months agomab4 math-btb4:
 
GRMZM2G081441
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 12th, 2017
Gene Model: February 13th, 2017
3 months agopza03527  :
3.03
       Variation: May 11th, 2017
3 months agodbb1 double B-box zinc finger protein1:
2.04
GRMZM2G018876
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agomre11a meiotic recombination protein 11 homolog A:
 
GRMZM2G106056
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Variation: May 10th, 2017
Gene Model: January 27th, 2017
3 months agomab10 math-btb10:
 
GRMZM2G154437
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
3 months agomab14 math-btb14:
 
GRMZM2G052985
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 13th, 2017
3 months agomab16 math-btb16:
 
GRMZM2G172210
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 14th, 2017
3 months agodbb2 double B-box zinc finger protein2:
 
GRMZM2G131982
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb3 double B-box zinc finger protein3: similar to Arabidopsis light-regulated zinc finger protein 1
 
GRMZM5G834596
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb5 double B-box zinc finger protein5:
 
GRMZM2G118884
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb7 double B-box zinc finger protein7:
 
GRMZM2G110541
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb8 double B-box zinc finger protein8:
 
GRMZM2G070446
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb9 double B-box zinc finger protein9:
 
GRMZM2G116475
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb10 double B-box zinc finger protein10:
 
GRMZM2G143718
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb11 double B-box zinc finger protein11:
 
GRMZM2G028594
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb12 double B-box zinc finger protein12:
 
GRMZM2G098442
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb6 double B-box zinc finger protein6:
5.05
GRMZM2G095299
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agodbb4 double B-box zinc finger protein4:
4.05
GRMZM2G019335
Li, W-L et al. 2017. Funct Integr Genomics pp.doi: 10.1007/s10142-017-0562-z     Reference: May 10th, 2017
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 months agogcs1 generative cell specific1:
 
GRMZM2G412911
Moiseeva, YM et al. 2017. Russian Journal of Developmental Biology. 48:117-121   AT4G11720 (TAIR)
LOC_Os05g18730 (MSU/TIGR)
Reference: April 10th, 2017
Variation: May 9th, 2017
Gene Model: April 10th, 2017
3 months agodof21 C2C2-Dof-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.02
GRMZM2G162749
Peng, J et al. 2017. Frontiers Plant Sci 8:685     Reference: May 6th, 2017
Variation: January 6th, 2017
Gene Model: January 6th, 2017
3 months agocncr1 cinnamoyl CoA reductase1: Mutant results in plants with improved cell wall digestibility
1.07
GRMZM2G131205
Smith, RA et al. 2017. Biotechnol Biofuels. 10:109     Reference: May 5th, 2017
Gene Product: September 1st, 2003
Variation: May 5th, 2017
Gene Model: June 23rd, 2016
3 months agomab7 math-btb7:
 
GRMZM2G110531
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 13th, 2017
3 months agomab18 math-btb18:
 
GRMZM2G060765
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
3 months agomab30 math-btb30:
 
GRMZM2G319215
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Variation: May 4th, 2017
Gene Model: February 14th, 2017
3 months agocki3 cyclin-dependent kinase inhibitor3:
 
GRMZM2G157510
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: May 4th, 2017
Gene Model: March 7th, 2017
3 months agomac1 multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications!
10.03
GRMZM2G027522
Wang, C-J, et al. 2012. Development. 139:2594-2603     Reference: May 2nd, 2017
Gene Product: August 2nd, 2012
Variation: August 10th, 2012
Gene Model: July 26th, 2012
Recommended by Chung-Ju Rachel Wang:
December 19th, 2013
3 months agosm1 salmon silks1: silks salmon color with P1-rr and P1-wr, brown with P1-ww
6.05 - 6.05
GRMZM2G031311
Casas, MI et al. 2016. Plant Cell 28:1297-1309     Reference: May 1st, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
3 months agosm2 salmon silk2: like sm1; silks salmon color with P1-rr and P1-wr, brown with P1-ww
2.07
GRMZM2G180283
Casas, MI et al. 2016. Plant Cell 28:1297-1309     Reference: May 1st, 2017
Gene Product: May 26th, 2016
Variation: May 26th, 2016
Gene Model: May 26th, 2016
3 months agoprh17 protein phosphatase homolog17: responds to Pi starvation
 
GRMZM2G164352
Wang, J et al. 2017. PLoS One 12:e0176538     Reference: April 28th, 2017
Gene Product: September 1st, 2003
Variation: April 28th, 2017
Gene Model: April 28th, 2017
3 months agorca1 RUBISCO activase1: single copy leaf cDNA csu901 smilar to RUBISCO activaseencodes the beta form of RUBISCO activase
4.00
GRMZM2G162282
Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: October 28th, 2014
Variation: September 1st, 2003
Gene Model: February 11th, 2014
3 months agokn1 knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf
1.10
   Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Variation: December 6th, 2013
3 months agonip1a NOD26-like membrane intrinsic protein1: leaf cDNA csu177 similar to rice nodulin
5.04
GRMZM2G041980
Bouchet, S et al. 2017. Heredity 118:249-259     Reference: April 27th, 2017
Gene Product: September 1st, 2003
Variation: June 2nd, 2015
Gene Model: June 2nd, 2015
3 months agonod1 narrow odd dwarf1: mutants are small plants with narrow leaves
 
GRMZM2G027821
Rosa, M et al. 2017. Plant Cell 29:474-490   AT4G35920 (TAIR)
LOC_Os03g06120 (MSU/TIGR)
Reference: April 27th, 2017
Gene Product: March 4th, 2017
Variation: March 4th, 2017
Gene Model: March 4th, 2017
3 months agobz1 bronze1: modifies purple aleurone and plant color to pale or reddish brown; anthers yellow-fluorescent; allele bz1-m4 = sh1-bz1-m4; SSR phi017NCBI: UDPG-flavonoid 3-oxy glucosyl transferase
9.02
   Pan, QC et al. 2017. Sci. Rep. 7:1205     Reference: April 26th, 2017
Gene Product: September 1st, 2003
Variation: June 25th, 2015
3 months agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
   Pan, QC et al. 2017. Sci. Rep. 7:1205     Reference: April 26th, 2017
Gene Product: October 25th, 2006
Variation: October 13th, 2014
3 months agobnl10.13a  : NCBI: probable serine/threonine-protein kinase PIX13
10.05
GRMZM2G142832
Matz, EC et al. 1992. MNL 66:107     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
3 months agohb91 Homeobox-transcription factor 91: Tests with B-A translocations indicated that this probe did not map to chromosomes 4L or 6L.NCBI: Homeodomain leucine zipper family IV proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.07
GRMZM2G122897
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
3 months agonpi285a(cac)  :
10.02
GRMZM2G350841
Hulbert, SH and Bennetzen, JL. 1991. Mol Gen Genet 226:377-382     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
3 months agoumc130  :
10.03
GRMZM2G125931
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 25th, 2017
Gene Model: April 25th, 2017
3 months agophp20075a(gast)  : NCBI: GAST1 protein
10.01
GRMZM2G172596
Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 25th, 2017
3 months agoumc259a  :
10.05
AC233888.1_FG001
    Variation: April 25th, 2017
Gene Model: April 25th, 2017
4 months agotps23 terpene synthase23: part of defense response to herbivory by western maize rootworm and Spodoptera littoralis but not expressed highly in most North American maize
10.03
GRMZM2G127336
Tamiru, A et al. 2017. Ecology and Evolution. 7:2835-2845     Reference: April 22nd, 2017
Gene Product: July 21st, 2008
Variation: March 21st, 2017
Gene Model: August 22nd, 2012
4 months agoumc95  : NCBI: Putative calmodulin-binding family protein
9.05
GRMZM5G880028
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
4 months agonta1 N-terminal amidase1: NCBI: CemA-like proton extrusion protein-related
9.08
GRMZM2G110258
Anderson, L, et al. 2004. Genetics. 166:1923-1933   At4g34090 (TAIR)
LOC_Os03g01920 (MSU/TIGR)
Reference: February 12th, 2011
Variation: April 21st, 2017
Gene Model: April 21st, 2017
4 months agoasg12a  : genomic clone, single copyNCBI: putative glycosyl hydrolase family 10 protein
9.07
GRMZM2G048375
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: April 21st, 2017
Gene Model: April 21st, 2017
4 months agocsu634  : protein phosphatase 2C-like (Alexandrov et al.)
9.05
GRMZM2G006429
    Variation: April 20th, 2017
Gene Model: April 20th, 2017
4 months agonpi414a  : similar to Arabidopsis NADH dehydrogenase
8.08
GRMZM2G069260
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 19th, 2017
Gene Model: April 19th, 2017
4 months agocsu31a  : partially sequenced cDNA to leaf mRNANCBI: Tat pathway signal sequence
8.06
GRMZM2G154508
Heredia-Diaz, O et al. 1994. MNL 68:30-34     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 19th, 2017
4 months agoagrr21  : NCBI: protein CURVATURE THYLAKOID 1C, chloroplastic
8.09
GRMZM2G302639
Armstrong, CL et al. 1992. Theor Appl Genet 84:755-762     Reference: September 1st, 2003
Variation: September 25th, 2007
Gene Model: April 19th, 2017
4 months agosi606065d12  :
1.03
GRMZM2G149481
    Gene Product: April 19th, 2017
Gene Model: April 19th, 2017
4 months agoatl1 auxin transporter-like1: mutant tassels have reduced branch numbers; bald tip on ears with fewer spikelets per row, and agravitropic root growth
 
GRMZM2G128918
Huang, P et al. 2017. Nature Plants 3:17054   AT2G38120 (TAIR)
LOC_Os01g63770 (MSU/TIGR)
Reference: April 19th, 2017
Gene Product: April 19th, 2017
Variation: April 19th, 2017
Gene Model: March 12th, 2015
4 months agorip1 ribosome-inactivating protein1: electrophoretic mobility, seed-specific, abundant 32kD endosperm protein (b32 protein), cytosolic, inactivates rabbit (not maize or wheat) ribosomes; cDNA ZmRIP3, SSR phi014, phi060, umc1202
8.03
GRMZM2G063536
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: April 19th, 2005
Gene Model: April 18th, 2017
4 months agocsu454(gst)  :
1.01
GRMZM2G096247
    Gene Product: September 1st, 2003
Variation: August 9th, 2010
Gene Model: April 18th, 2017
4 months agoumc1149  : NCBI: Glutathione S-transferase family
8.06
GRMZM2G105005
    Gene Product: September 1st, 2003
Variation: April 18th, 2017
Gene Model: April 18th, 2017
4 months agorop7 Rho-related protein from plants 7: cDNA, plasma membrane targeting, SSR umc1950In Maize Genetics Conference Abstracts rop7 was called rop1. These abstracts are indeed discussing rop7.
8.05
AC209819.3_FG012
Christensen, T, et al. 2003. Plant Physiol. 133:1791-1808     Reference: March 26th, 2004
Gene Product: April 1st, 2004
Variation: April 18th, 2017
Gene Model: January 1st, 2015
4 months agogst9 glutathione transferase9:
9.07
GRMZM2G126763
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
4 months agogst15 glutathione transferase15:
8.05
GRMZM2G150474
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
4 months agogst17 glutathione transferase17:
5.05
GRMZM2G064255
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2017
4 months agogst21 glutathione transferase21:
3.05
GRMZM2G428168
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
4 months agogst22 glutathione transferase22:
10.04
GRMZM2G330635
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 18th, 2010
Gene Model: April 18th, 2017
4 months agogst26 glutathione transferase26:
4.05
GRMZM2G363540
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
4 months agogst34 glutathione transferase34:
 
GRMZM2G149182
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: April 18th, 2017
4 months agoumc1457  : NCBI: universal stress protein family
8.03
GRMZM5G887068
    Variation: April 14th, 2017
Gene Model: April 14th, 2017
4 months agosut1 sucrose transporter1: mutant plants are deficient in leaf sucrose unloading to pholem; mature leaves hyperaccumulate carbohydrates and display leaf chlorosis with premature senescence
1.02
GRMZM2G034302
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 16th, 2013
Gene Model: April 16th, 2013
4 months agoumc124a(chk)  : "NCBI: choline/ethanolamine kinase; putative choline kinase 2"
8.03
GRMZM2G087146
Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 14th, 2017
Gene Model: April 14th, 2017
4 months agosxd1 sucrose export defective1: vitamin E synthesis; anthocyanin accumulates in a non-clonal pattern at tip and margins of leaves soon after emergence from whorl; reduced plant height
5.04
   Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: December 1st, 2012
Variation: August 7th, 2012
4 months agokch6 potassium channel6:
8.03
AC234152.1_FG002
Philippar, K et al. 1999. Proc Natl Acad Sci, USA 96:12186-12191     Reference: October 20th, 2008
Gene Product: February 20th, 2008
Variation: April 14th, 2017
Gene Model: April 14th, 2017
4 months agosut3 sucrose transporter3:
1.08
GRMZM2G083248
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
4 months agotdy1 tie-dyed1: Leaf blades develop variegated chlorotic and green regions; chlorotic regions hyperaccumulate carbohydrates.(Braun 2008)
6.07
GRMZM2G321778
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Variation: September 14th, 2011
Gene Model: July 14th, 2011
4 months agotdy2 tie-dyed2: leaves yellow in patches simulating tie-dyed or zebra patterns
 
GRMZM5G840560
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 5th, 2012
Variation: September 4th, 2012
Gene Model: September 4th, 2012
4 months agosut4 sucrose transporter4:
5.09
GRMZM2G145107
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: February 17th, 2017
Gene Model: April 17th, 2013
4 months agosut2 sucrose transporter2: mutants grow slower and have increased sugar content in leaves
3.04
GRMZM2G307561
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: February 20th, 2017
Gene Model: April 17th, 2013
4 months agosut5 sucrose transporter5:
 
GRMZM2G081589
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
4 months agosut6 sucrose transporter6:
 
GRMZM2G106741
Braun, DM; Slewinski, TL. 2009. Plant Physiol 149:71-81     Reference: April 14th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: November 3rd, 2015
4 months agosut7 sucrose transporter7: single copy cDNA; transcripts observed in mature leaf blades of young plants, and at reproductive stage in various tissues including leaf sheaths, culms, husks, pedicels, with little transcript detected in silks and developing kernels.
9.07
GRMZM2G087901
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: April 17th, 2013
4 months agocps5 chloroplast protein synthesis5: NCBI: putative leucine--tRNA ligase, mitochondrialChloroplast protein synthesis 5: chloroplast leucyl-tRNA synthetase (A. Barkan, 2015)
8.02
GRMZM5G858471
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 12th, 2017
4 months agorpl40 50S ribosomal protein L40: npi220b was called npi553 but is listed in the database as npi220b
8.01
GRMZM2G157007
Sisco, PH. 1991. Crop Sci 31:1263-1266     Reference: September 1st, 2003
Variation: April 12th, 2017
Gene Model: April 12th, 2017
4 months agomyb23 MYB-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: April 11th, 2017
4 months agoumc168  : NCBI: similar to Arabidopsis aldehyde dehydrogenase 22A1
7.06
GRMZM2G135341
Senior, ML et al. 1996. MNL 70:50-54     Reference: September 1st, 2003
Variation: April 11th, 2017
Gene Model: April 11th, 2017
4 months agoafd1 absence of first division1: male and female sterility; early meiosis
6.07
GRMZM2G059037
Ren, J et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2892-6   AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene)
Reference: April 10th, 2017
Gene Product: July 30th, 2009
Variation: August 11th, 2011
Gene Model: July 14th, 2011
4 months agofdr1 first division restitution1: confers high anther fertility in haploids
 
   Ren, J et al. 2017. Theor Appl Genet pp.doi: 10.1007/s00122-017-2892-6     Reference: April 10th, 2017
Variation: September 6th, 2013
4 months agohb48 Homeobox-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
4 months agohb76 Homeobox-transcription factor 76: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tsuda, K et al. 2017. Plant Cell pp.doi: 10.1105/tpc.16.00967     Reference: April 7th, 2017
Variation: April 7th, 2017
4 months agoumc1710  : NCBI: similar to Arabidopsis PLAC8 family protein
7.04
GRMZM2G008687
    Variation: April 7th, 2017
Gene Model: April 7th, 2017
4 months agoasg34a(msd)  :
7.02
GRMZM2G054267
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 7th, 2017
4 months agoasg49  : NCBI: Pentatricopeptide repeat-containing protein
7.03
GRMZM2G003869
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: April 7th, 2017
Gene Model: April 7th, 2017
4 months agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
   Li, CX et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12739     Reference: April 6th, 2017
Gene Product: December 18th, 2014
Variation: November 8th, 2007
4 months agonpi393  :
6.03
GRMZM2G158668
Stuber, CW et al. 1992. Genetics 132:823-839     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 6th, 2017
4 months agoumc132a(chk)  : NCBI: putative choline kinase 2
6.07
GRMZM2G014303
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
4 months agoumc21  : NCBI: Protein-tyrosine-phosphatase IBR5
6.05
GRMZM2G174170
Rocheford, TR. 1994. Proc Annu Corn Sorghum Ind Res Conf 49:239-249     Reference: September 1st, 2003
Variation: April 6th, 2017
Gene Model: April 6th, 2017
4 months agoumc59a  : NPI linkage catalog of 1/25/91 places this probe on chromosome 7.NCBI: WAT1-related protein
6.02
GRMZM2G134930
Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: April 5th, 2017
Gene Model: April 5th, 2017
4 months agoln1 linoleic acid1: lower ratio of oleate to linoleate in kernelembryo oil content and composition,cloned by chromosome walk to high oil QTL; maybe allele of ln1 (Zheng 2008)
6.04 - 6.04
GRMZM2G169089
Karn, A et al. 2017. G3 7:1157-1164     Reference: April 4th, 2017
Gene Product: July 22nd, 2008
Variation: August 16th, 2014
Gene Model: August 15th, 2014
4 months agopsa1 photosystemI1: Required for PSI accumulation. Harbors NifU domain implicated in Fe-S cluster assembly. Ortholog of Arabidopsis Nfu-IVa. (A. Barkan, 2015)lacks photosystem I core complex polypeptides; harbors NifU domain implicated in Fe-S cluster assemblyNCBI: NFU3 NifU-like protein 3
6.02
GRMZM2G100976
Belcher, S et al. 2015. Biochem Biophys Acta 1847:1004-1016     Reference: December 1st, 2015
Variation: April 4th, 2017
Gene Model: April 4th, 2017
4 months agozfp30 putative zinc finger protein30:
4.09
GRMZM2G116079
    Gene Product: April 4th, 2017
Variation: May 19th, 2015
Gene Model: May 19th, 2015
4 months agoznf2 Zinc finger nuclease2: located between sh1 and bz1 (Hawkins et al., 2014)
9.01
GRMZM2G478553
Hawkins, JS et al. 2014. Plant J 79:375-384     Reference: September 25th, 2015
Gene Product: April 4th, 2017
Variation: September 25th, 2015
Gene Model: September 25th, 2015
4 months agorzfl1 RING zinc finger protein-like1:
9.06
   Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: April 4th, 2017
Variation: September 25th, 2007
4 months agotsh1 tassel sheath1: leaves develop at base of tassel branches and spikelet pairstsh1 was positionally cloned by Whipple et al, 2010. It was initially mapped between umc2059 and bnlg1740. The position was narrowed using a larger population, synteny with rice provided two candidate genes, one was selected based on sequencing differences from progenitors for three independent EMS alleles.
6.07
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: April 4th, 2017
Variation: October 6th, 2011
4 months agorhcp1 ring hc protein1: expressed during brace root initiation and regulated by abiotic stresses.
 
GRMZM2G024690
Li, W-L et al. 2017. J Integrative Agric 16: 60345-60347     Reference: April 3rd, 2017
Gene Product: April 4th, 2017
Variation: April 3rd, 2017
Gene Model: April 3rd, 2017
4 months agotan1 tangled1: (was py1) leaves short, pointed, fine white streaks; displays abnormally oriented cell divisions and altered growth and development throughout the plant
6.05
   Martinez, P; Luo, A; Sylvester, AW; Rasmussen, CG. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1619252114     Reference: April 2nd, 2017
Variation: June 29th, 2005
4 months agorgh3 rough endosperm3: Mature rgh3 seeds show a rough, etched, or pitted endosperm surface as well as a reduced seed size
 
GRMZM5G849788
Gault, CM, et al. 2017. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1616173114     Reference: April 2nd, 2017
Gene Product: December 29th, 2011
Variation: December 29th, 2011
Gene Model: April 29th, 2013
4 months agohct5 hydroxycinnamoyltransferase5: up-regulated in the Rp1-D21 mutant lines
2.04
GRMZM2G158083
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: November 7th, 2015
Gene Model: November 7th, 2015
4 months agocesa9 cellulose synthase9: cDNA
2.06
   Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
4 months agocesa13 cellulose synthase13: NCBI: cellulose synthase A catalytic subunit 4 [UDP-forming]-like
 
GRMZM2G037413
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: October 7th, 2016
Gene Model: April 1st, 2017
4 months agocml1 coumarate ligase1:
5.04
GRMZM2G075333
Xiao, WH et al. 2017. Plant Sci pp.doi: 10.1016/j.plantsci.2017.03.012     Reference: April 1st, 2017
Gene Product: April 1st, 2017
Gene Model: June 23rd, 2016
4 months agodek10 defective kernel10: collapsed endosperm; lethal; cultured embryos green, curled, stubby; encodes a E-subgroup PPR protein
4.06 - 4.11
GRMZM2G087226
Qi, WW et al. 2017. Genetics 205:1489-1501     Reference: March 31st, 2017
Gene Product: December 27th, 2016
Variation: February 20th, 2017
Gene Model: February 20th, 2017
4 months agomybr51 MYB-related-transcription factor 51:
5.09
GRMZM2G379167
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 31st, 2017
4 months agocol12 2C2-CO-like-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: zinc finger protein CONSTANS-LIKE 16
5.07
GRMZM2G041991
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: March 31st, 2017
Gene Model: March 31st, 2017
4 months agogrf9 growth-regulating factor9: NCBI: growth-regulating factor 9-like
5.08 - 5.08
GRMZM5G893117
Zhang, D et al. 2008. Plant Sci 175:809-817     Reference: July 6th, 2015
Variation: March 30th, 2017
Gene Model: March 30th, 2017
4 months agoumc126a  : NCBI: probable WRKY transcription factor 51
5.06
   Sachs, MM pp.87-102 in Basra, AS. 1994.Harwood Academic Publishers     Reference: September 1st, 2003
Variation: March 30th, 2017
4 months agod11 dwarf11: dominant mutant that appears to inhibit GA biosynthesis.
 
   Wang, YJ et al. 2017. Plant Mol Biol Rep pp.DOI: 10.1007/s11105-017-1028-0     Reference: March 30th, 2017
Variation: June 18th, 2013
4 months agoumc1482  : NCBI: NF-180
5.04
GRMZM2G037865
    Variation: September 1st, 2003
Gene Model: March 29th, 2017
4 months agoemp17 empty pericarp17: mutants abolish the C-to-U editing of ccmB-43 and rps4-335 sites in mitochondria
 
AC212684.3_FG012
Yang, Y-Z et al. 2017. New Phytol pp.doi: 10.1111/nph.14424     Reference: January 26th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: January 26th, 2017
4 months agoemp10 empty pericarp10: mutant effects the cis-splicing of nad2 intron 1 and seed development
 
GRMZM2G078416
Cai, MJ et al. 2017. Plant J pp.doi: 10.1111/tpj.13551     Reference: March 28th, 2017
Gene Product: December 27th, 2016
Variation: March 28th, 2017
Gene Model: March 28th, 2017
4 months agorz474a(dnaj)  : NCBI: putative dnaJ chaperone family protein
5.03
GRMZM2G134980
    Variation: March 24th, 2017
Gene Model: March 24th, 2017
5 months agoipt5 isopentenyl transferase5: encodes an isopentenyl transferase
5.01
AC210013.4_FG005
Vyroubalova, S, et al. 2009. Plant Physiol. 151:433-447     Reference: March 25th, 2014
Gene Product: March 19th, 2014
Variation: September 1st, 2003
Gene Model: March 23rd, 2017
5 months agovps1 vesicular transport protein1: NCBI: similar to Aabidopsis Vps51/Vps67 family (components of vesicular transport) protein
5.02
GRMZM2G023858
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 23rd, 2017
Gene Model: March 23rd, 2017
5 months agoasg73  :
5.02
GRMZM2G122863
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: March 23rd, 2017
Gene Model: March 23rd, 2017
5 months agowee1 wee1: cDNA single copy, deduced protein 50% identity to protein kinase domain of human Wee1; SSR umc1255
4.11
GRMZM5G878541
Sun, YM, et al. 1999. Proc Natl Acad Sci, USA. 96:4180-4185     Reference: May 24th, 2010
Variation: March 21st, 2017
Gene Model: March 17th, 2017
5 months agopco131924a  : NCBI: similar to Arabdopsis L-ascorbate peroxidase
5.05
       Variation: March 21st, 2017
5 months agoms2 male sterile2: like ms1; affected between vacuolation and pore formation
9.03
   Kang, D et al. 2017. Plant Breed pp.DOI: 10.1111/pbr.12468     Reference: March 17th, 2017
Variation: August 23rd, 2013
5 months agotcptf2 TCP-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.09
GRMZM2G003944
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: March 17th, 2017
Gene Model: March 17th, 2017
5 months agophp20608a  :
4.10
GRMZM2G101818
Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: March 17th, 2017
Gene Model: March 17th, 2017
5 months agocyp8 cytochrome P-450 8: developing inflorescence, cDNA clone, assayed in transgenic yeast microsomes
1.08
   Sun, XC et al. 2017. doi: 10.1038/ncomms14752   LOC_Os10g26340 (MSU/TIGR) Reference: March 16th, 2017
Gene Product: September 1st, 2003
Variation: October 24th, 2012
5 months agocyp21 cytochrome P-450 21:
 
GRMZM2G054603
    Gene Product: August 18th, 2015
Gene Model: March 16th, 2017
5 months agocyc13 cyclin13:
4.07
GRMZM2G075117
    Gene Product: June 26th, 2009
Variation: March 15th, 2017
Gene Model: March 15th, 2017
5 months agolg2 liguleless2: like lg1, less extreme
3.06
   Kong, FY et al. 2017. Molecular Plant 10:516-519     Reference: March 14th, 2017
Gene Product: August 22nd, 2014
Variation: August 20th, 2014
5 months agomatl1 matrilineal1: encodes a pollen-specific phospholipase; novel edits lead to a 6.7% haploid induction rate
 
GRMZM2G471240
Kelliher, T, et al. 2017. Nature. 542:105-109     Reference: March 14th, 2017
Gene Product: March 14th, 2017
Variation: February 10th, 2017
Gene Model: January 25th, 2017
5 months agoumc1511  :
4.05
GRMZM2G004878
    Variation: March 10th, 2017
Gene Model: March 11th, 2017
5 months agogras28 GRAS-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: DELLA protein GAI-like
4.04
GRMZM2G342217
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 11th, 2017
5 months agoglk22 G2-like-transcription factor 22: NCBI: Putative MYB DNA-binding domain superfamily proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.04
GRMZM2G315506
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 10th, 2017
5 months agophp20725a  : NCBI: plant viral-response family protein
4.02
GRMZM2G076435
Llaca, V et al. 1997. Maize Genetics Conference Abstracts 39     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 10th, 2017
5 months agocki1 cyclin-dependent kinase inhibitor1:
1.08
GRMZM2G116885
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Variation: December 6th, 2016
Gene Model: December 6th, 2016
5 months agokri1 ketol-acid reductoisomerase1: endosperm cDNA 5C05H04 similar to plant branched chain amino acid synthesis enzyme (aka uaz269)cdo Probe is an oat leaf cDNA. Minor band maps to this site.
1.04
GRMZM2G161868
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 8th, 2017
Gene Model: March 8th, 2017
5 months agocki6 cyclin-dependent kinase inhibitor6:
4.07
GRMZM2G084570
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
5 months agocki7 cyclin-dependent kinase inhibitor7:
 
GRMZM2G343769
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
5 months agocki8 cyclin-dependent kinase inhibitor8:
 
GRMZM2G154414
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
5 months agocki5 cyclin-dependent kinase inhibitor5:
5.07
GRMZM2G101613
Xiao, QL et al. 2017. Sci. Rep. 7:43818     Reference: March 7th, 2017
Gene Product: March 8th, 2017
Gene Model: March 7th, 2017
5 months agocap1 calcium pump1: anoxic root cDNA, low or single copy, complements yeast mutants defective in Ca++-pumps
8.05
   Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: September 1st, 2003
5 months agocrp1 chloroplast RNA processing1: Chloroplast PPR protein. Activates translation of petA and psaC genes. Stabilizes petB-petD intergenic RNA termini. Binds petA, psaC, petD 5'UTRs. (A. Barkan, 2015)pale green seedling lethal, high chlorophyll leaf fluorescence;cytochromeb6/f and PSI deficient; protein translation
7.03 - 7.06
   Ferrari, R et al. 2017. Frontiers in Plant Science 8:163   AT5G42310 (TAIR)
LOC_Os07g36390 (MSU/TIGR)
LOC_Os07g36390 (Gramene)
Reference: March 7th, 2017
Gene Product: December 27th, 2016
Variation: July 23rd, 2009
5 months agoumc1641  : NCBI: chaperone protein dnaJ 49-like
3.09
GRMZM2G064031
    Variation: March 7th, 2017
Gene Model: March 7th, 2017
5 months agoumc17a  : NCBI plasma membrane associated protein
3.08
GRMZM2G057283
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: March 7th, 2017
Gene Model: March 7th, 2017
5 months agocap3 calcium pump3: paralog of cap1; calcium-transporting ATPase
 
GRMZM2G162426
Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Variation: May 20th, 2015
Gene Model: May 20th, 2015
5 months agocap4 calcium pump4: paralog of cap1; calcium-transporting ATPase
 
AC233878.1_FG004
Subbaiah, C et al. 2017. Mol Plant-Microbe Interact pp.doi: 10.1094/MPMI-02-17-0026-R     Reference: March 7th, 2017
Gene Product: May 20th, 2015
Gene Model: May 26th, 2015
5 months agoprh16 putative protein phosphatase 2C 16:
2.01
GRMZM2G056572
    Variation: February 17th, 2017
Gene Model: March 6th, 2017
5 months agoumc1539  : NCBI: selenoprotein family protein
3.05 - 3.06
GRMZM2G109429
    Variation: March 3rd, 2017
Gene Model: March 3rd, 2017
5 months agonactf132 NAC-transcription factor 132: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Estermann, MA et al. 2017. Mol Breed 37:12     Reference: March 3rd, 2017
Gene Product: September 22nd, 2015
Variation: March 3rd, 2017
5 months agonactf49 NAC-transcription factor 49: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Estermann, MA et al. 2017. Mol Breed 37:12     Reference: March 3rd, 2017
Gene Product: September 22nd, 2015
Variation: March 3rd, 2017
5 months agozar3 Zea mays ARGOS homolog3: putative auxin response gene regulating organ size
 
GRMZM2G137546
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: April 14th, 2014
5 months agozar1 Zea mays ARGOS1: affects yield, and response to drought
 
GRMZM2G446201
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: April 14th, 2014
5 months agozar8 Zea mays ARGOS8: Over-expression can lead to improved drought tolerance
 
GRMZM2G354338
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agozar6 Zea mays ARGOS6:
 
GRMZM2G162250
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agozar7 Zea mays ARGOS7:
 
GRMZM2G113583
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agozar9 Zea mays ARGOS9:
 
GRMZM2G082943
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agozar5 Zea mays ARGOS5:
 
GRMZM2G175995
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agozar4 Zea mays ARGOS4:
 
GRMZM2G066029
Bruce, W et al. 2017. Patent Application 20170037424     Reference: March 2nd, 2017
Gene Product: August 3rd, 2015
Gene Model: August 1st, 2015
5 months agogts1 Glutamine--tRNA ligase cytoplasmic1:
3.03
GRMZM2G048012
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 2nd, 2017
Gene Model: March 2nd, 2017
5 months agobnl8.15  : NCBI: putative E3 ubiquitin-protein ligase LIN
3.01
GRMZM2G153127
Armstrong, CL et al. 1992. Theor Appl Genet 84:755-762     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 1st, 2017
5 months agoumc32a  : NCBI: putative ubiquitin-conjugating enzyme E2 25
3.01
GRMZM2G123519
Grant, D and Helentjaris, T. 1995. RFLP probe sequence submission to dbSTS     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 1st, 2017
5 months agocsu32a  : NCBI: heme-binding protein 2 alex heme-binding protein 2 precursor
3.02
GRMZM2G093405
Savidan, YH et al. 1995. pp.86-92 in Taba, S. 1995.CIMMYT Maize Program     Reference: September 1st, 2003
Variation: March 1st, 2017
Gene Model: March 1st, 2017
5 months agotcptf43 TCP-transcription factor 43: Mapped upper band to this site.Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.simiiar to Arabidosis transcription factor TCP2
2.10
GRMZM2G020805
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: February 28th, 2017
Gene Model: February 28th, 2017
5 months agosid1 sister of indeterminate spikelet1: inflorescence architecture, apparent target of tasselseed4 microRNA (Chuck et al 2008),
 
GRMZM2G176175
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: February 27th, 2017
Variation: October 17th, 2014
Gene Model: October 16th, 2014
Recommended by Lisa Harper:
September 2nd, 2008
5 months agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
GRMZM5G862109
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: February 27th, 2017
Variation: December 4th, 2013
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
5 months agoereb53 AP2-EREBP-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Lowe, KS et al. 2016. Plant Cell pp.10.1105/tpc.16.00124   LOC_Os1g67410 (MSU/TIGR) Reference: October 1st, 2016
Gene Product: February 27th, 2017
5 months agodwil1 dwarf & irregular leaf1: mutant plants have shorter internodes, shorter, wider and wrinkled leaves, as well as smaller leaf angle
 
GRMZM2G013657
Jiang, F et al. 2012. PLoS One 7:e37040     Reference: March 12th, 2013
Gene Product: February 27th, 2017
Variation: March 18th, 2013
Gene Model: March 12th, 2013
5 months agoemp6 empty pericarp6: mutant causes early arrest in grain development leading to an empty pericarp phenotype.similar to Arabidopsis ubiquitin thiolesterase
2.07
GRMZM2G048392
Chettoor, AM et al. 2014. J Integr Plant Biol pp.DOI: 10.1111/jipb.12234     Reference: July 4th, 2014
Gene Product: July 4th, 2014
Variation: February 24th, 2017
Gene Model: February 24th, 2017
5 months agotms5 thermosensitive male-sterile5: mutants were fertile at 24C, but male sterile at 32C; exhibit fertility transition at 28C
4.01
GRMZM2G147727
Li, J et al. 2017. Journal of Genetics and Genomics pp.doi: 10.1016/j.jgg.2017.02.002   LOC_Os02g12290 (MSU/TIGR)
Os02g0214300 (Gramene)
Reference: February 24th, 2017
Variation: February 24th, 2017
Gene Model: February 24th, 2017
5 months agoask2 aspartate kinase2: lysine-threonine resistance
2.06
GRMZM2G052935
Wang, X et al. 2007. J Exp Bot 58:2653-2660     Reference: September 9th, 2010
Gene Product: September 1st, 2003
Variation: September 9th, 2010
Gene Model: February 23rd, 2017
5 months agocsu337  :
2.05
GRMZM2G164440
Baysdorfer, C. 1996. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: February 23rd, 2017
5 months agoumc131  : similar to predicted 2,3-dimethylmalate lyase-like isoform 2 of B. distachyon / phosphoenolpyruvate carboxylase-like protein of Arabidopsis
2.05
GRMZM2G024933
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: February 22nd, 2017
Gene Model: February 22nd, 2017
6 months agopal2 phenylalanine ammonia lyase2:
2.04 - 2.04
GRMZM2G441347
Rius, SP et al. 2016. Frontiers Plant Sci pp.doi: 10.3389/fpls.2016.00523     Reference: May 6th, 2016
Gene Product: September 1st, 2003
Variation: February 21st, 2017
Gene Model: February 21st, 2017
6 months agomads68 MADS-transcription factor 68: Ortholog of rice MADS47; regulates zein gene transcription by interacting with o2 (Qiao et al., 2016)
1.02
GRMZM2G059102
Qi, WW et al. 2016. BMC Biotechnology 16:58   LOC_Os03g08754 (MSU/TIGR) Reference: February 20th, 2017
Variation: April 15th, 2016
Gene Model: April 15th, 2016
6 months agortcs1 rootless concerning crown and seminal roots1: root system reduced solely to a primary root yet plants can be carried to seed; cyclin cDNAs absent; naphthalene acetic acid induces adventitious roots
1.02
GRMZM2G092542
Tai, H et al. 2017. J Exp Bot 68:403-414     Reference: February 17th, 2017
Gene Product: October 5th, 2009
Variation: October 5th, 2009
Gene Model: July 23rd, 2013
6 months agosweet1a sugars will eventually be exported transporter1a:
3.06
GRMZM2G039365
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosps1 sucrose phosphate synthase1: cDNA encodes a 1068 amino acid leaf protein; transgenic (E. coli) directs sucrose phosphate synthesis
8.06
   Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: January 15th, 2015
6 months agosweet15a sugars will eventually be exported transporter15a:
4.05
GRMZM2G168365
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Variation: September 1st, 2003
Gene Model: November 3rd, 2015
6 months agospp1 sucrose-phosphatase1:
8.04
   Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: August 2nd, 2013
6 months agosus1 sucrose synthase1: (was sus2, css1) sucrose synthase-1 (SUS1) of embryo and other tissues, compare sh1; SSRs phi016, 032, 042
9.04
GRMZM2G152908
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: October 25th, 2006
Variation: October 27th, 2014
Gene Model: August 12th, 2014
6 months agosweet4b sugars will eventually be exported transporter4b:
5.04
GRMZM2G144581
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet11 sugars will eventually be exported transporter11:
1.06
GRMZM2G368827
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agomstr1 monosaccharide transporter1:
7.00
GRMZM2G135739
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: July 14th, 2008
Gene Model: September 17th, 2015
6 months agomstr2 monosaccharide transporter2:
4.04
GRMZM2G141034
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: October 19th, 2010
Gene Model: September 17th, 2015
6 months agomstr4 monosaccharide transporter4:
9.04
GRMZM2G034061
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Variation: July 14th, 2008
Gene Model: September 17th, 2015
6 months agosweet1b sugars will eventually be exported transporter1b:
 
GRMZM2G153358
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet2 sugars will eventually be exported transporter2:
 
GRMZM2G324903
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet3a sugars will eventually be exported transporter3a:
 
GRMZM2G179679
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet3b sugars will eventually be exported transporter3b:
 
GRMZM2G060974
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet4a sugars will eventually be exported transporter4a:
 
GRMZM2G000812
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet6b sugars will eventually be exported transporter6b:
 
GRMZM2G416965
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet12a sugars will eventually be exported transporter12a:
 
GRMZM2G133322
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet12b sugars will eventually be exported transporter12b:
 
GRMZM2G099609
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet13a sugars will eventually be exported transporter13a:
 
GRMZM2G173669
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet13b sugars will eventually be exported transporter13b:
 
GRMZM2G021706
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet13c sugars will eventually be exported transporter13c:
 
GRMZM2G179349
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet14a sugars will eventually be exported transporter14a:
 
GRMZM2G094955
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet14b sugars will eventually be exported transporter14b:
 
GRMZM2G015976
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet15b sugars will eventually be exported transporter15b:
 
GRMZM5G872392
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet17a sugars will eventually be exported transporter17a:
 
GRMZM2G106462
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet17b sugars will eventually be exported transporter17b:
 
GRMZM2G111926
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet16 sugars will eventually be exported transporter16:
 
GRMZM2G107597
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Gene Model: November 3rd, 2015
6 months agosweet6a sugars will eventually be exported transporter6a:
3.09
GRMZM2G157675
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: November 4th, 2015
Variation: March 31st, 2005
Gene Model: November 3rd, 2015
6 months agosps2 sucrose phosphate synthase2: leaf cDNA csu328, sequence similar to sps1
3.05
GRMZM2G140107
Sosso, D et al. 2015. Nature Genetics 47:1489-1493     Reference: February 17th, 2017
Gene Product: September 1st, 2003
Variation: March 19th, 2015
Gene Model: March 18th, 2015
6 months agogst38 glutathione transferase38:
1.05
GRMZM2G066369
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: February 16th, 2017
6 months agomab23 math-btb23:
6.02
GRMZM2G143782
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agomab2 math-btb2:
 
GRMZM2G404188
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab3 math-btb3:
 
GRMZM2G337139
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab5 math-btb5:
 
GRMZM2G372171
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab6 math-btb6:
 
GRMZM2G125162
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab8 math-btb8:
 
GRMZM2G418031
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab9 math-btb9:
 
GRMZM2G574887
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab11 math-btb11:
 
GRMZM2G077428
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab12 math-btb12:
 
GRMZM2G181276
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab13 math-btb13:
 
GRMZM2G027688
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 13th, 2017
6 months agomab21 math-btb21:
 
GRMZM2G109738
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agomab22 math-btb22:
 
GRMZM2G046238
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agomab28 math-btb28:
 
GRMZM2G041963
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agomab29 math-btb29:
 
GRMZM2G077951
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agomab31 math-btb31:
 
   Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
6 months agomab19 math-btb19:
7.01
GRMZM2G074323
Juranic, M et al. 2012. Plant Cell 24:4974-4991     Reference: February 14th, 2017
Gene Product: June 6th, 2014
Gene Model: February 14th, 2017
6 months agots4 tasselseed4: encodes miRNA that targets ts6 and sid1; tassel compact silky mass, upright, with pistillate and staminate florets; ear silky and proliferated
3.05 - 3.05
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: June 17th, 2016
Variation: October 17th, 2014
Recommended by George Chuck:
September 25th, 2007
6 months agoms45 male sterile45: abnormal microspore wall formation, tassel specific, cDNA clone
9.06
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: June 27th, 2014
Variation: June 27th, 2014
6 months agopex1 pollen extensin-like1: clone specifies repeat motif ser-pro4
2.09
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
6 months agoam1 ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)affects switch to meiotic cell cycle
5.02
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: August 11th, 2011
6 months agoan1 anther ear1: andromonoecious dwarf, intermediate stature; few tassel branches; responds to gibberellins; an1-6923 includes deletion of Bz2+
1.08
GRMZM2G081554
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 16th, 2012
Variation: September 18th, 2015
Gene Model: November 7th, 2011
6 months agod1 dwarf plant1: andromonoecious, short, compact plants; responds to gibberellins; d1-t intermediate in height
3.03
GRMZM2G036340
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: October 25th, 2014
Variation: October 30th, 2014
Gene Model: October 2nd, 2012
6 months agod3 dwarf plant3: like d1, plant short and compact; "d2" mutation(s) are allelic (d2 is lapsed)
9.03
GRMZM2G093195
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 15th, 2012
Variation: May 19th, 2006
Gene Model: November 8th, 2012
6 months agod5 dwarf plant5: like d1
2.02
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: December 3rd, 2015
6 months agoig1 indeterminate gametophyte1: low male fertility, polyembryony, heterofertilization, polyploidy, androgenesis (male and female affected)
3.06 - 3.07
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: October 2nd, 2007
Variation: October 19th, 2010
6 months agoms22 male sterile22: pollen mother cells degenerate
7.02
GRMZM2G442791
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: August 12th, 2012
Variation: February 12th, 2013
Gene Model: August 11th, 2012
6 months agoms23 male sterile23: pollen mother cells degenerate
8.01 - 8.02
GRMZM2G021276
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 14th, 2016
Variation: December 4th, 2016
Gene Model: December 4th, 2016
6 months agoms8 male sterile8: pollen mother cells degenerate
8.06
GRMZM2G119265
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: July 29th, 2013
Variation: July 29th, 2013
Gene Model: July 29th, 2013
6 months agots2 tassel seed2: like ts1, but tassel branches variably pistillate and staminate; sequence homologous to short chain alcohol dehydrogenases; SSR phi001
1.03
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
6 months agots5 tassel seed5: dominant Ts5 tassels are upright with scattered, short silks; branches mostly pistillate toward the base
4.03 - 4.05
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: September 1st, 2003
6 months agopme1 pectin methylesterase1: pollen; cDNA and genomic sequences
10.04
GRMZM2G125356
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: October 8th, 2015
Gene Model: October 8th, 2015
6 months agoes4 embryo sac4: one of 4-5 copy gene family; pre-zygotic, embryo sac specific; required for pollen tube growth arrest and burst
 
GRMZM2G128301
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: April 22nd, 2011
Variation: April 25th, 2011
Gene Model: April 22nd, 2011
6 months agoms32 male sterile32: like ms1
2.00 - 2.10
GRMZM2G163233
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 2nd, 2013
Variation: December 4th, 2016
Gene Model: September 2nd, 2013
6 months agoocl4 outer cell layer4:
1.05 - 1.06
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 1st, 2003
Variation: February 23rd, 2013
6 months agoexpb1 beta expansin1: belongs to a multigene family; most likely exists as two or more copies.
9.04
GRMZM2G146551
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: April 24th, 2008
Variation: December 1st, 2012
Gene Model: February 10th, 2015
6 months agots3 tassel seed3: dominant Ts3 tassel has large sections of either pistillate or staminate flowers in tandem; some pollen
1.09
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: September 1st, 2003
6 months agotcl1 tapetal cell layer1: Mutant fails to form coherent middle and tapetal layers, and there are extra cells between the endothecial and inner sporogenous (AR) cells.
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: February 12th, 2013
6 months agohrl1 heirless1: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agonol1 no legacy1: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agobsl2 baseless2: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agosba1 superbase1: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agomrn1 maternally reduced endosperm1: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agobsl1 baseless1: maternal-effect dek
 
   Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Variation: July 29th, 2016
6 months agodcl101 dicer-like 101: mutant plants have 'fuzzy tassel' and reduced stature.
1.01
GRMZM2G040762
Zhou, LZ et al. 2017. Molecular Plant pp.doi: 10.1016/j.molp.2017.01.012     Reference: February 13th, 2017
Gene Product: September 5th, 2006
Variation: December 4th, 2014
Gene Model: November 12th, 2014
6 months agobhlh175 bHLH-transcription factor 175: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Lu, X et al. 2017. Plant Physiol Biochem 113:78-88   AT3G26744 (TAIR) Reference: February 11th, 2017
Gene Product: September 14th, 2016
6 months agoms26 male sterile26: tapetal cells abnormal, die early; microspores vacuolate early and abort after the tetrad stage
1.02 - 1.02
   Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 30th, 2013
Variation: September 27th, 2013
6 months agoals2 acetolactate synthase2: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kineticsSecond band mapped to this site. Acetolactate pyruvate-lyase from tobacco used as the dup(als2) probe
5.04
GRMZM2G143008
Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2013
Gene Model: July 27th, 2016
6 months agoals1 acetolactate synthase1: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kinetics
4.05
   Svitashev, SK et al. 2015. Plant Physiol 169:931-945     Reference: February 10th, 2017
Gene Product: September 1st, 2003
Variation: September 18th, 2013
6 months agoAY110393  :
1.04
GRMZM2G084783
    Variation: September 25th, 2007
Gene Model: February 10th, 2017
6 months agocipk3 calcineurin B-like-interacting protein kinase3: single copy genomic clone similar to plant protein kinase
1.04
GRMZM2G174896
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: February 10th, 2017
Gene Model: February 10th, 2017
6 months agorgd1 ragged seedling1: (aka lbl1) seedling leaves narrow, thread-like, have difficulty in emerging; low temperature enhances expression
6.01 - 6.01
   Xu, J et al. 2017. Nucl Acid Res pp.doi: 10.1093/nar/gkx085     Reference: February 9th, 2017
Gene Product: December 18th, 2014
Variation: June 8th, 2015
6 months agobaf1 barren stalk fastigiate1: ear shoots often absent, or distorted and fused to culm at base; tassel branches erect, bundled, fused to culm at base
9.02
GRMZM2G072274
Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Variation: August 15th, 2011
Gene Model: December 8th, 2014
6 months agobd1 branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy
7.05
GRMZM2G307119
Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400   At5g18560 (TAIR)
LOC_Os07g47330 (MSU/TIGR)
LOC_Os01g21820 (Gramene)
Reference: February 3rd, 2017
Gene Product: July 27th, 2009
Variation: August 13th, 2011
Gene Model: July 14th, 2011
6 months agoid1 indeterminate growth1: requires extended growth for flowering; vegetatively totipotent with gt1 and factors for perennialism
1.08
   Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: January 3rd, 2015
Variation: August 3rd, 2015
6 months agona1 nana plant1: short, erect dwarf; no response to gibberellins
3.06 - 3.08
GRMZM2G449033
Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: July 24th, 2012
Variation: December 22nd, 2016
Gene Model: December 20th, 2011
6 months agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: April 11th, 2007
Variation: August 20th, 2010
6 months agora3 ramosa3: branched inflorescence; mutant ears have abnormal long branches at their bases; trehalose biosynthesis
7.06
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: September 15th, 2013
Variation: December 3rd, 2010
6 months agowab1 Wavy auricles in blades1: dominant confers auricle tissue in blade portion of leafrecessive mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants
2.06 - 2.07
GRMZM2G110242
Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: September 14th, 2016
Variation: November 2nd, 2014
Gene Model: November 2nd, 2014
6 months agoub2 unbranched2: double mutant shows decrease in tassel branch number
 
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: December 18th, 2014
Variation: December 17th, 2014
6 months agophyB2 phytochromeB2: phyB2 mutant is early flowering. Double mutant with phyB1 is pale, narrow with elongated leaf blades and elongated internodes, and contains less anthocyanin in sheath tissues.
9.05
   Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: October 24th, 2007
Variation: January 11th, 2013
6 months agobif2 barren inflorescence2: recessive few-branched tassel, normally no pollen shed; variable expression on ear with 0-2 spikelets produced at each floral node
1.05
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400   AT2G34650 (TAIR) Reference: February 3rd, 2017
Gene Product: July 19th, 2012
Variation: October 23rd, 2013
6 months agoga2ox13 gibberellin 2-oxidase13:
 
GRMZM2G031432
Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Gene Product: October 27th, 2014
Gene Model: October 30th, 2014
6 months agoconz1 constans1: homologous to photoperiod genes constans (co) from Arabiodopsis and heading date 1 (hd1) in rice. (Miller 2008)
9.03
   Jamann, TM; Sood, S; Wisser, RJ; Holland, JB. 2017. PLoS One. 12:e0168910     Reference: February 3rd, 2017
Variation: July 28th, 2008
6 months agoumc1811  :
1.06
AC187262.4_FG007
    Variation: February 1st, 2017
Gene Model: February 1st, 2017
6 months agoumc2224  :
1.01
GRMZM2G076062
    Variation: February 1st, 2017
Gene Model: February 1st, 2017
6 months agocsu3  : cDNA partially sequenced, weak homology to yeast heat shock protein 26, SwissProt P15992 and to leghemoglobin, GenBank accession M91075
1.05
GRMZM2G162292
Baysdorfer, C. 1993. Personal communication to MaizeDB     Reference: September 1st, 2003
Variation: February 15th, 2007
Gene Model: February 1st, 2017
6 months agoyab11 C2C2-YABBY-transcription factor 11: UMC 1989 map places umc67a on chromosome 5, but all other reports show chromosome 1Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G141955
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: October 16th, 2015
Variation: January 31st, 2017
Gene Model: January 31st, 2017
6 months agobhlh3 bHLH-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.03
GRMZM2G180452
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 31st, 2017
Gene Model: January 31st, 2017
6 months agockx6 cytokinin oxidase6:
1.08
GRMZM2G404443
Gu, R et al. 2010. J Plant Growth Reg 29:428-440     Reference: March 28th, 2014
Gene Product: April 4th, 2014
Gene Model: January 27th, 2017
6 months agonactf48 NAC-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G054252
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 27th, 2017
Gene Model: January 27th, 2017
6 months agospo1 topoisomerase-like enzyme1: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
 
GRMZM2G129913
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Variation: June 20th, 2014
Gene Model: June 19th, 2014
6 months agospo2 topoisomerase-like enzyme2: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
 
GRMZM5G890820
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Gene Model: June 19th, 2014
6 months agospo3 topoisomerase-like enzyme3: Homolog of SPO11, which generates double-stranded breaks along meiotic chromosomes
1.03
GRMZM2G052581
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: June 19th, 2014
Variation: January 27th, 2017
Gene Model: June 19th, 2014
6 months agorad51b recombination protein51 gene b: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination
3.05
GRMZM2G084762
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: August 12th, 2016
Variation: May 13th, 2012
Gene Model: June 19th, 2014
6 months agorad51a recombination protein51 gene a: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination
7.04
GRMZM2G121543
Sidhu, GK et al. 2017. BMC Genomics 18:106     Reference: January 27th, 2017
Gene Product: August 12th, 2016
Variation: April 19th, 2012
Gene Model: June 19th, 2014
6 months agoglk6 G2-like-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.07
GRMZM2G117193
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 26th, 2017
Gene Model: January 26th, 2017
6 months agol15 luteus15: like l4; lethal yellow seedling; chloroplast mRNA processing.Chloroplast PPR protein. Activates atpH translation. Stabilizes atpH and psaJ RNA termini. Binds atpI-atpH and psaJ-rpl33 intergenic regions. (A. Barkan, 2015)
6.02 - 6.03
GRMZM2G177169
Miranda, RG et al. 2017. RNA-Publ RNA Soc pp.doi: 10.1261/rna.059568.116   AT2G18940 (TAIR)
LOC_Os05g19380 (MSU/TIGR)
LOC_Os05g19380 (Gramene)
Reference: January 25th, 2017
Gene Product: December 30th, 2015
Variation: November 7th, 2012
Gene Model: November 6th, 2012
6 months agoumc2243  : NCBI: putative actin family protein
1.11
GRMZM2G053299
    Variation: January 25th, 2017
Gene Model: January 25th, 2017
6 months agoumc2244  : like Arabidopsis pantoate--beta-alanine ligase
1.12
GRMZM5G876146
    Variation: January 25th, 2017
Gene Model: January 25th, 2017
7 months agoms10 male sterile10: like ms5; affected at microspore vacuolation
10.04 - 10.05
GRMZM5G830329
Somaratne, Y et al. 2017. Plant J pp.doi: 10.1111/tpj.13476   AT1G01280 (TAIR)
LOC_Os08g03682 (MSU/TIGR)
Reference: January 14th, 2017
Gene Product: January 20th, 2017
Variation: January 19th, 2017
Gene Model: January 19th, 2017
7 months agoumc2237  : NCBI: cyclin-D4-2-like
1.07
GRMZM2G133413
    Variation: January 19th, 2017
Gene Model: January 19th, 2017
7 months agoumc2234  :
1.06
GRMZM2G441903
    Variation: January 18th, 2017
Gene Model: January 18th, 2017
7 months agoumc2235  :
1.06
GRMZM2G074270
    Variation: January 18th, 2017
Gene Model: January 18th, 2017
7 months agobub1 budding unhibited by benzimidazoles homolog1:
 
GRMZM2G105750
Su, H et al. 2017. New Phytol pp.doi: 10.1111/nph.14415     Reference: January 16th, 2017
Gene Product: May 13th, 2014
Variation: January 16th, 2017
Gene Model: January 15th, 2017
7 months agobub3 budding unhibited by benzimidazoles homolog3: encodes WD40 repeat-like superfamily protein that is a mitotic checkpoint
9.02
GRMZM5G899300
Su, H et al. 2017. New Phytol pp.doi: 10.1111/nph.14415     Reference: January 16th, 2017
Variation: January 16th, 2017
Gene Model: January 15th, 2017
7 months agoumc2228  : NCBI: glucan endo-1,3-beta-glucosidase 4
1.04
GRMZM2G125241
    Variation: January 10th, 2017
Gene Model: January 10th, 2017
7 months agoumc2229  : similar to Arabidopsis rhomboid -like 2
1.04
GRMZM2G093962
    Variation: January 10th, 2017
Gene Model: January 10th, 2017
7 months agostk2 serine-threonine kinase2: Sequence orthologous to rice stk2, in maize BAC contig overlapping b0178I03 and b0004G18 (Alleman 2006)
2.04
GRMZM2G179268
Alleman, M, et al. 2006. Nature. 442:295-298     Reference: August 7th, 2006
Gene Product: May 13th, 2014
Gene Model: January 9th, 2017
Recommended by Ed Coe:
May 1st, 2007
7 months agoplt3 phospholipid transfer protein homolog3:
3.06
GRMZM2G126397
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: January 8th, 2017
Gene Model: January 6th, 2017
7 months agoplt2 phospholipid transfer protein homolog2: amino acid sequence, deduced from coleoptile cDNA; SSR locus umc1010
3.09
   Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: September 1st, 2003
7 months agoms44 male sterile44: dominant Ms44 plants male sterile
4.08
AC225127.3_FG003
Fox, TW et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12689     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: January 6th, 2017
Gene Model: January 6th, 2017
7 months agoumc1664  : NCBI: putative bifunctional inhibitor/LTP/seed storage protein family
1.06
GRMZM2G083725
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: December 2nd, 2016
Gene Model: December 2nd, 2016
7 months agoumc2226  :
1.02
GRMZM2G114055
    Variation: January 6th, 2017
Gene Model: January 6th, 2017
7 months agoumc2227  : NCBI: similar to B. distachyon putative HLH DNA-binding domain superfamily protein (EHC Jun 2017)
1.04
GRMZM2G412430
    Variation: January 6th, 2017
Gene Model: January 6th, 2017
7 months agoplt1 phospholipid transfer protein homolog1: amino acid sequence, deduced from coleoptile cDNA, homologous to phospholipid transfer proteins
3.06
GRMZM2G127949
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: March 17th, 2015
Gene Model: March 6th, 2015
7 months agomfs18 male flower specific18: cDNA sequence, associated with tassel glume vascular bundles
3.04
EF517601.1_FG016
Basse, C. 2005. Plant Physiol. 138:1774-1784     Reference: November 23rd, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 6th, 2017
7 months agoAY110426  : similar to Arabidopsis bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein
1.11
GRMZM2G006047
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: July 29th, 2004
Gene Model: January 6th, 2017
7 months agonkd1 naked endosperm1: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
 
GRMZM2G129261
Gontarek, BC; Neelakandan, AK; Wu, H; Becraft, P. 2016. Plant Cell. 0:doi: 10.1105/tpc.16.00609     Reference: January 6th, 2017
Gene Product: January 3rd, 2015
Variation: January 3rd, 2015
Gene Model: January 2nd, 2015
7 months agonkd2 naked endosperm2: double mutants have multiple (2-5) layers of peripheral endosperm cells that lack starch granules or other features of starchy endosperm
 
GRMZM5G884137
Gontarek, BC; Neelakandan, AK; Wu, H; Becraft, P. 2016. Plant Cell. 0:doi: 10.1105/tpc.16.00609     Reference: January 6th, 2017
Gene Product: January 3rd, 2015
Variation: January 3rd, 2015
Gene Model: January 2nd, 2015
7 months agoltp1 lipid transfer protein1:
 
GRMZM2G320373
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: August 1st, 2016
7 months agoplt4 phospholipid transfer protein homolog4:
 
GRMZM2G174680
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
7 months agoplt5 phospholipid transfer protein homolog5:
 
GRMZM2G005991
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
7 months agoplt6 phospholipid transfer protein homolog6:
 
GRMZM2G116167
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Gene Model: January 6th, 2017
7 months agonthr3 anther-specific protein 3:
7.03
GRMZM2G073377
Fox, TW et al. 2017. Plant Biotechnol J pp.doi: 10.1111/pbi.12689     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: May 9th, 2009
Gene Model: July 28th, 2016
7 months agobetl9 basal endosperm transfer layer9: endosperm transfer cell specific protein regulated by mrp1 myb related protein1; RFLP gpm92
3.05
GRMZM2G087413
Wei, KF; Zhong, XJ. 2014. BMC Plant Biology 4:281     Reference: January 6th, 2017
Gene Product: September 1st, 2003
Variation: October 8th, 2009
Gene Model: July 4th, 2014
7 months agoipe1 irregular pollen exine1: mutants are male sterile and exhibit a glossy outer anther surface, abnormal Ubish bodies, and defective pollen exine
1.00 - 1.05
GRMZM2G434500
Chen, X et al. 2017. Plant Physiol 173:307-325   AT1G12570 (TAIR) Reference: January 5th, 2017
Gene Product: November 16th, 2016
Variation: November 16th, 2016
Gene Model: November 16th, 2016
7 months agodek2 defective kernel2: discolored, scarred endosperm; lethal; cultured embryos green
1.06 - 1.12
GRMZM2G110851
Qi, WW et al. 2017. Genetics 205:239-249     Reference: January 4th, 2017
Gene Product: December 27th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
7 months agoub3 unbranched3: double mutant shows decrease in tassel branch number
 
   Du, YF et al. 2017. New Phytol pp.doi: 10.1111/nph.14391     Reference: January 4th, 2017
Gene Product: December 18th, 2014
Variation: December 17th, 2014
7 months agoumc2181  : similar to Arabidopsis heavy metal transport/detoxification domain-containing protein
1.08
GRMZM2G008290
    Variation: January 4th, 2017
Gene Model: January 4th, 2017
7 months agohb36 Homeobox-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: homeodomain protein JUBEL1
1.10
GRMZM2G396114
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: January 3rd, 2017
Gene Model: January 3rd, 2017
7 months agohb84 Homeobox-transcription factor 84: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI:putative POX domain/homeobox DNA-binding domain family protein
1.06
GRMZM2G099319
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 30th, 2016
Gene Model: December 30th, 2016
7 months agoc3h45 C3H-transcription factor 345: NCBI: putative RNA-binding zinc finger family proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.similar to Zinc finger CCCH domain-containing protein of M. trunculata
1.04 - 1.04
GRMZM2G003424
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 30th, 2016
Gene Model: December 30th, 2016
7 months agopolm2 polymerase II transcription-mediator2: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
9.08
GRMZM5G844080
Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
7 months agopolm3 polymerase II transcription-mediator3: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
9.03
GRMZM2G053588
Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
7 months agocdc2 cell division control protein2 homolog: cDNA sequence homologous to cdc2/cdc28 subfamily of serine/threonine protein kinases, complements yeast cdc28
1.01
GRMZM2G008327
Sabelli, PA et al. 2005. Maydica 50:485-496     Reference: June 24th, 2009
Gene Product: December 29th, 2016
Variation: April 23rd, 2010
Gene Model: March 30th, 2015
7 months agopolm1 polymerase II transcription-mediator1: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
 
GRMZM2G114459
Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
7 months agocdk8 cyclin dependent kinase8: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
5.03
GRMZM2G166771
Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: December 29th, 2016
Variation: December 29th, 2016
Gene Model: December 29th, 2016
7 months agocyc12 cyclin12: encodes part of the "CDK8" module that mediates transcription initiation with RNA Polymerase II
7.03
GRMZM2G408242
Nunez-Rios, T et al. 2017. bioRxiv doi: 10.1101/097204     Reference: December 29th, 2016
Gene Product: June 26th, 2009
Variation: December 29th, 2016
Gene Model: December 29th, 2016
7 months agoers14 ethylene receptor1-14:
5.01
GRMZM2G102601
Gallie, DR; Young, T. 2004. Mol Genet Genomics. 271:267-281     Reference: August 3rd, 2008
Variation: May 16th, 2014
Gene Model: December 28th, 2016
Recommended by Ed Coe:
January 8th, 2008
7 months agopex2 pollen extensin-like2: clone like pex1
4.01
GRMZM2G478929
Stratford, S et al. 2001. Plant Mol Biol 46:43-56     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
7 months agorxo1 reaction to X. oryzae1: necrotic or hypersensitive reaction to inoculant
6.00
GRMZM2G334584
Zhao, BY, et al. 2005. Proc Natl Acad Sci, USA. 102:15383-15388     Reference: May 22nd, 2009
Variation: May 13th, 2012
Gene Model: December 28th, 2016
7 months agoexpb2 beta expansin2: expressed specifically in the elongating region of maize primary root
1.05
GRMZM2G021621
Wu, YJ et al. 2001. Plant Physiol 126:1471-1479     Reference: May 21st, 2010
Gene Product: March 12th, 2008
Variation: December 28th, 2016
Gene Model: December 28th, 2016
7 months agorpl5a 60S ribosomal protein L5-1 homolog a: endosperm cDNA 5C05D11 (uaz189), similar to ribosomal protein
3.05
GRMZM5G815894
Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 9th, 2011
Gene Model: December 28th, 2016
7 months agoploc1 plastocyanin homolog1: leaf cDNA csu257, similar to plastocyanin
6.04
GRMZM2G071450
Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: March 27th, 2013
Gene Model: December 28th, 2016
7 months agocas1 cycloartenol synthase1: leaf cDNA csu265
4.10
GRMZM2G065494
Davis, G et al. 1996. Maize Genetics Conference Abstracts 38     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
7 months agoprl1 protease PrlC candidate1: endosperm cDNA 2C01C07, similar to bacterial oligopeptidase A
5.08
GRMZM2G133919
Shen, B; Carneiro, N; Torres-Jerez, I; Stevenson, B; McCreery, T; Helentjaris, T; Baysdorfer, C; Alm. 1994. Plant Mol Biol 26:1085-1101     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
7 months agoaaa1 adenosylmethionine aminotransferase1: endosperm cDNA 5C01E09 (uaz113) similar to bacterial biotin synthesis enzyme
2.02
GRMZM5G817886
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
7 months agoras2 Ras-related protein2: Homolog of mammalian binding GTP rab2 proteins
10.04
GRMZM2G173878
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 14th, 2011
Gene Model: December 28th, 2016
7 months agolhy1 late hypocotyl elongation protein ortholog1: myb transcription factor - core clock gene (Hayes et al. 2010)
10.03
GRMZM2G474769
Ko, DK, et al. 2016. PLoS Genetics. 12:e1006197     Reference: October 3rd, 2016
Gene Product: July 31st, 2016
Variation: December 28th, 2016
Gene Model: December 28th, 2016
7 months agorhn1 ras-related protein RHN1:
 
GRMZM2G131254
Zhang, JM et al. 2007. J Integr Plant Biol 49:1129-1141     Reference: January 12th, 2011
Variation: January 14th, 2011
Gene Model: December 28th, 2016
7 months agoubi3 ubiquitin3: candidate gene for major plant and ear height QTL
 
GRMZM2G014119
Ding, XY et al. 2017. Euphytica 213:21   AT1G31340 (TAIR) Reference: December 28th, 2016
Gene Product: September 1st, 2003
Gene Model: December 28th, 2016
7 months agoost1 oligosaccharide transferase1: vegetative meristem cDNA 7C02F04 similar to an integral endoplasmic reticulum protein
7.02
GRMZM2G462325
Helentjaris, T. 1995. Nucleotide sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 28th, 2016
7 months agophm5822  :
2.02
   Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT1G79490 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
7 months agocbl3 calcineurin B-like3:
1.09
GRMZM2G112672
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocrs4 chloroplast RNA splicing4: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits
 
GRMZM2G481231
Barkan, A. 2009. maize gene review DOI-crs4:unassigned     Reference: November 17th, 2009
Gene Product: September 15th, 2012
Variation: December 27th, 2016
Gene Model: July 15th, 2011
7 months agoumc1991  : Similar to Arabidopsis MATE efflux family protein (multidrug and toxic compound extrusion (MATE) family)NCBI: transparent testa 12 protein
1.08
GRMZM5G842695
    Variation: December 27th, 2016
Gene Model: December 27th, 2016
7 months agogst20 glutathione transferase20:
3.08
GRMZM2G447632
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: December 27th, 2016
7 months agogst40 glutathione transferase40:
1.09
GRMZM2G054653
McGonigle, B et al. 2000. Plant Physiol 124:1105-1120     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: June 13th, 2014
Gene Model: December 27th, 2016
7 months agoltk2 leucine-rich transmembrane protein kinase2: belongs to a small gene family; ltk2 shares 98.6% nucleotide sequence homology with ltk3, and these genes could be products of a recent gene duplication located on chromosome 9L.
9.07
GRMZM2G330907
Li, ZH and Wurtzel, E. 1998. Plant Mol Biol 37:749-761     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: January 10th, 2013
Gene Model: December 27th, 2016
7 months agofdx1 ferredoxin1: chloroplast, light induced, N-terminal amino acid sequence of mature protein, cDNA sequence, SSR phi075
6.00
GRMZM2G122337
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: December 27th, 2016
7 months agoppr*-59040 pentatricopeptide repeat*-59040: pentatricopeptide repeat-containing protein orthologous to At3g59040
 
GRMZM2G005938
  At3g59040 (TAIR)
LOC_Os08g09270 (MSU/TIGR)
LOC_Os08g09270 (Gramene)
Gene Product: December 27th, 2016
Variation: January 22nd, 2015
Gene Model: January 21st, 2015
7 months agoppr53 pentatricopeptide repeat53: mutants exhibit a range of chlorotic phenotypes; specifically reduce transcript levels of ndhA (cp) and rrn23 (cp)
 
GRMZM2G438524
Zoschke, R et al. 2016. Plant J 85:594-606   AT5G46580 (TAIR) Reference: April 28th, 2016
Gene Product: December 27th, 2016
Variation: December 9th, 2015
Gene Model: December 9th, 2015
7 months agogun1 genomes uncoupled1: ortholog of Arabidopsis GUN1 (At2g31400) pentatricopeptide repeat-containing protein, chloroplastic-like
 
GRMZM2G432850
Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT2G31400 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
Gene Model: December 9th, 2015
7 months agopprsmr4 pentatricopeptide repeat smr4:
 
GRMZM2G164202
Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT2G17033 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
Gene Model: December 9th, 2015
7 months agoppr*-GRMZM2G475897 pentatricopeptide repeat*-GRMZM2G475897:
 
GRMZM2G475897
Liu, S et al. 2013. RNA Biology 10: 1501-1510   AT1G18900 (TAIR) Reference: December 9th, 2015
Gene Product: December 27th, 2016
Gene Model: December 9th, 2015
7 months agoemp16 empty pericarp16: mutant homozyous kernels have empty pericarp and are non-viable.
 
GRMZM2G060516
Xiu, Z-H et al. 2016. Plant J pp.DOI: 10.1111/tpj.13122     Reference: January 16th, 2016
Gene Product: December 27th, 2016
Variation: January 16th, 2016
Gene Model: January 16th, 2016
7 months agodek35 defective kernel35: mutants have defective kernels
 
GRMZM2G066749
Chen, XZ et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.08.008     Reference: September 7th, 2016
Gene Product: December 27th, 2016
Variation: September 7th, 2016
Gene Model: September 7th, 2016
7 months agocbl11 calcineurin B-like11:
 
GRMZM2G007555
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl2 calcineurin B-like2:
 
GRMZM2G173424
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl5 calcineurin B-like5:
 
GRMZM2G041729
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl7 calcineurin B-like7:
 
GRMZM2G033680
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl8 calcineurin B-like8:
 
GRMZM2G110080
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl12 calcineurin B-like12:
 
GRMZM2G137751
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agocbl10 calcineurin B-like10:
 
GRMZM2G116584
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
7 months agoppr521 pentatricopeptide repeat521:
 
GRMZM2G337701
Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: December 27th, 2016
Gene Model: December 26th, 2016
7 months agocrs3 chloroplast RNA splicing3: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits
 
GRMZM2G053196
Barkan, A. 2009. maize gene review DOI-crs4:unassigned     Reference: November 17th, 2009
Gene Product: September 15th, 2012
Gene Model: December 27th, 2016
7 months agocbl6 calcineurin B-like6:
10.02
GRMZM2G010093
Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Variation: March 31st, 2005
Gene Model: October 19th, 2016
7 months agobm3 brown midrib3: like bm1; has lowered activity of caffeic acid O-methyl transferase; application: modified lignin has improved digestibility in ruminants; silage corn with bm3 is in production. However, bm3 results in weaker stalks, reduced stover and grain yield, and in some cases reduced maturity; these effects appear genotype-specific
4.04
   Fornale, S et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw198     Reference: December 26th, 2016
Gene Product: February 16th, 2011
Variation: October 27th, 2015
7 months agorps8 (cp) 30S ribosomal protein S8 gene:
 
GRMZM5G845244
Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: September 1st, 2003
Gene Model: December 26th, 2016
7 months agopsbJ (cp)  :
 
GRMZM5G834496
Wei, KF; Han, P. 2016. Mol Breed 36:170     Reference: December 26th, 2016
Gene Product: September 1st, 2003
Gene Model: December 26th, 2016
7 months agoomt1 Caffeoyl-CoA O-methyltransferase1:
6.02
GRMZM2G127948
Fornale, S et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw198     Reference: December 26th, 2016
Gene Product: January 5th, 2014
Variation: December 26th, 2016
Gene Model: September 17th, 2014
8 months agoumc1976  :
1.02
GRMZM2G162535
    Variation: December 22nd, 2016
Gene Model: December 23rd, 2016
8 months agoumc1955  : NCBI: glycine-rich cell wall structural protein 2
1.08
GRMZM2G067315
    Variation: December 22nd, 2016
Gene Model: December 22nd, 2016
8 months agocyc10 cyclin10: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
GRMZM2G107377
Garza-Aguilar, SM et al. 2016. Physiol Plant pp.doi: 10.1111/ppl.12537     Reference: December 21st, 2016
Gene Product: June 26th, 2009
Variation: December 21st, 2016
Gene Model: December 21st, 2016
8 months agocyc11 cyclin11: Associates to cyclin dependent kinase proteins during germination and the complexes formed develop kinase activity.
 
GRMZM2G161382
Garza-Aguilar, SM et al. 2016. Physiol Plant pp.doi: 10.1111/ppl.12537     Reference: December 21st, 2016
Gene Product: June 26th, 2009
Gene Model: December 21st, 2016
8 months agobz2 bronze2: like bz1; anthers not fluorescent; an1-6923 mutation includes deletion for Bz2; encodes a glutathione S-transferase conjugating anthocyanins into the vacuole
1.08
   Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: March 31st, 2008
8 months agogst5 glutathione transferase5: cDNA, safener-induced; high activity with fluorodifen herbicide
1.11
GRMZM2G308687
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: July 22nd, 2010
Gene Model: July 27th, 2016
8 months agogst6 glutathione transferase6: cDNA, functionally expressed in E. coli
7.01
GRMZM2G129357
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: July 22nd, 2010
Gene Model: July 27th, 2016
8 months agogst7 glutathione transferase7: cDNA, functionally expressed in E. coli
3.05
GRMZM2G028556
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 9th, 2010
Gene Model: July 27th, 2016
8 months agoumc1917  :
1.04
AC213099.3_FG001
    Variation: December 20th, 2016
Gene Model: December 20th, 2016
8 months agogst8 glutathione transferase8:
 
GRMZM2G156877
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst10 glutathione transferase10:
1.01
GRMZM2G096153
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst11 glutathione transferase11:
1.01
GRMZM2G119499
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst12 glutathione S-transferase12: One of 12 Type I GSTs typed by sequence similarity
1.01
GRMZM2G096269
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: March 17th, 2006
Gene Model: July 27th, 2016
8 months agogst13 glutathione transferase13: cDNA; SSR umc2099
9.07
GRMZM2G126781
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 6th, 2010
Gene Model: July 27th, 2016
8 months agogst14 glutathione transferase14:
1.05
GRMZM2G175134
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst16 glutathione transferase16:
7.03
GRMZM5G895383
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: April 18th, 2015
8 months agogst18 glutathione transferase18:
3.05
GRMZM2G019090
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
Gene Model: October 22nd, 2014
8 months agogst24 glutathione transferase24:
5.07
GRMZM2G032856
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
8 months agogst25 glutathione transferase25:
9.08
GRMZM2G161905
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst28 glutathione transferase28:
3.05
GRMZM2G146475
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
8 months agogst30 glutathione transferase30:
1.04
GRMZM2G044383
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 21st, 2010
Gene Model: July 27th, 2016
8 months agogst31 glutathione transferase31: glutathione S-transferase subunit 31; matches PCO132874 (in silico from AF244696) placed by overgo on chromosome 1
1.01
GRMZM2G475059
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 21st, 2010
Gene Model: April 27th, 2016
8 months agogst32 glutathione transferase32:
1.04
GRMZM2G041685
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst33 glutathione transferase33:
 
   Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
8 months agogst35 glutathione transferase35:
9.08
GRMZM2G161891
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst23 glutathione transferase23: cDNA, SSR umc2098
7.02
GRMZM2G416632
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 20th, 2010
Gene Model: July 27th, 2016
8 months agogst37 glutathione transferase37:
7.04
GRMZM2G178079
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst39 glutathione transferase39:
1.05
GRMZM2G028821
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst41 glutathione transferase41:
6.05
GRMZM2G097989
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: September 1st, 2010
Gene Model: July 27th, 2016
8 months agogst42 glutathione transferase42:
1.04
GRMZM2G025190
Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Gene Model: July 27th, 2016
8 months agogst1 glutathione-S-transferase1: presence-absence of isozyme bands between inbred lines, members of a family of polymorphic bands; transcripts correlate with dimer isoforms; single copy in Southerns; SSRs phi080, phi015, umc1069
8.08 - 8.09
   Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 months agogst3 glutathione transferase3: cDNA sequence, correspondence to amino terminal of maize GSTIII, low or single copy, transgenic expression in E. coli results in enzyme activity similar to maize GSTIII enzyme
3.05
   Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
8 months agogst4 glutathione S-transferase4: constitutive and major subunit;amino acid sequence, cDNA sequence, transgenic expression, single or low copy gene, SSR phi073.
3.05
   Li, DZ et al. 2016. J Agric Food Chem pp.DOI: 10.1021/acs.jafc.6b04129     Reference: December 20th, 2016
Gene Product: September 1st, 2003
Variation: August 17th, 2010
8 months agoca2p6 CCAAT-HAP2-transcription factor 26:
1.08
GRMZM5G829103
Zhang, Z et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.08.020     Reference: August 8th, 2016
Gene Product: August 9th, 2016
Variation: December 17th, 2016
Gene Model: December 17th, 2016
8 months agobhlh132 bHLH-transcription factor 132: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.05
GRMZM2G114873
Rabissi, A et al. 2016. Plant Sci 253:1-12     Reference: December 15th, 2016
Gene Product: September 14th, 2016
Gene Model: September 12th, 2016
8 months agonyc1 non-yellow coloring1: plays an important role in chlorophyll content and other related traits, and different sites act on chlorophyll metabolism under different light intensities in maize seedlings
3.01
GRMZM2G170013
Chan, AN et al. 2017. Euphytica 213:12   AT4g13250 (TAIR)
LOC_Os01g12710 (MSU/TIGR)
Os01g0227100 (Gramene)
Reference: December 15th, 2016
Gene Product: December 15th, 2016
Variation: December 15th, 2016
Gene Model: December 15th, 2016
8 months agoapx2 ascorbate peroxidase2: leaf cDNA, similar to plant cytosolic ascorbate peroxidase; sequence distinct from apx1
2.08
GRMZM2G140667
Hong, CY et al. 2016. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2016.12.064     Reference: December 14th, 2016
Gene Product: September 1st, 2003
Variation: February 16th, 2015
Gene Model: February 16th, 2015
Recommended by Ed Coe:
January 8th, 2008
8 months agoumc1849  : similar to TPR ( tetratricopeptide) domain containing protein
1.04
GRMZM2G069618
    Variation: December 14th, 2016
Gene Model: December 14th, 2016
8 months agorel2 ramosa1 enhancer locus2: rel2 mutants dramatically increase the formation of long branches in ears of both ra1 and ra2 mutants
10.03
   Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Variation: January 13th, 2012
8 months agoumc1812  : similar to Arabidopsis yippee-like protein
1.06
GRMZM2G169451
    Variation: September 1st, 2003
Gene Model: December 13th, 2016
8 months agolug3 leunig-related3:
1.12
GRMZM2G036169
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug5 leunig-related5:
3.04
   Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Variation: September 25th, 2007
8 months agotpl1 topless-related1:
 
GRMZM2G316967
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agotpl2 topless-related2:
 
GRMZM2G030422
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug1 leunig-related1:
 
GRMZM2G361398
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug4 leunig-related4:
 
GRMZM2G097640
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug6 leunig-related6:
 
GRMZM2G149708
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug7 leunig-related7:
 
GRMZM2G111247
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug8 leunig-related8:
 
GRMZM2G061186
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agolug2 leunig-related2:
5.08
GRMZM2G079013
Li, HY et al. 2016. J Plant Biol 59:603-615     Reference: December 12th, 2016
Gene Product: December 13th, 2016
Gene Model: December 12th, 2016
8 months agoumc1715  :
1.09
GRMZM2G171559
    Variation: December 8th, 2016
Gene Model: December 8th, 2016
8 months agoumc1734  :
1.05
GRMZM2G114667
    Variation: September 1st, 2003
Gene Model: December 8th, 2016
8 months agoumc1737  :
1.11
GRMZM2G082312
    Variation: December 8th, 2016
Gene Model: December 8th, 2016
8 months agoumc1748  : similar to M. trunculata auxin-induced protein
1.06
GRMZM2G386209
    Variation: December 8th, 2016
Gene Model: December 8th, 2016
8 months agoumc1709  :
1.06
GRMZM2G159996
    Variation: December 7th, 2016
Gene Model: December 7th, 2016
8 months agoumc1711  :
1.02
GRMZM2G107815
    Variation: December 7th, 2016
Gene Model: December 7th, 2016
8 months agoopr5 12-oxo-phytodienoic acid reductase5: Predicted to have cytoplasmic localization (Zhang et al. 2005)
2.04
GRMZM2G087192
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: July 21st, 2008
Gene Model: November 27th, 2013
Recommended by Ed Coe:
May 1st, 2007
8 months agomir1 maize insect resistance1: single copy cDNA
6.02
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: August 9th, 2015
Variation: July 29th, 2016
8 months agozim28 ZIM-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.02
GRMZM2G116614
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Variation: September 1st, 2003
Gene Model: December 6th, 2016
8 months agomyb100 MYB-transcription factor 100: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.05
GRMZM2G143046
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: December 6th, 2016
Gene Model: December 6th, 2016
8 months agosci1 subtilisin-chymotrypsin inhibitor homolog1: cDNA from germinating embryo infected with Fusarium moniliforme; similar to subtilisin-chymotrypsin inhibitor
8.05
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Variation: August 25th, 2015
8 months agofht1 flavanone 3-hydroxylase1: (aka f3h) single copy cDNA similar to Antirrhinum homolog
2.01 - 2.02
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: June 8th, 2012
Variation: September 1st, 2003
8 months agomybr88 MYB-related-transcription factor 88: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.09
GRMZM2G064328
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: December 6th, 2016
8 months agoaos1 allene oxide synthase1: expression induction by herbivory and methyl jasmonate
9.06
GRMZM2G067225
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Variation: September 24th, 2010
Gene Model: October 29th, 2015
8 months agoopr3 12-oxo-phytodienoic acid reductase3:
 
GRMZM2G156712
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: June 29th, 2012
Gene Model: November 27th, 2013
8 months agoopr4 12-oxo-phytodienoic acid reductase4: Cytoplasmic
8.05
   Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 3rd, 2010
Variation: November 5th, 2010
8 months agoaos2 allene oxide synthesis2:
 
GRMZM2G072653
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: September 1st, 2003
Gene Model: October 29th, 2015
8 months agoacs2 1-aminocyclopropane-1-carboxylate synthase2:
2.02
GRMZM2G164405
Borrego, EJ; Kolomiets, MV. 2016. Plants 5:doi: 10.3390/plants5040041     Reference: December 6th, 2016
Gene Product: May 16th, 2016
Variation: May 3rd, 2007
Gene Model: January 21st, 2016
8 months agoexpa4 alpha-expansin4:
1.11
GRMZM2G368886
Wu, YJ et al. 2001. Plant Physiol 126:222-232     Reference: May 21st, 2010
Variation: December 1st, 2016
Gene Model: December 1st, 2016
8 months agoumc1626  : similar to Arabidopsis purple acid phosphatase 24
1.05
GRMZM5G801886
    Variation: September 25th, 2007
Gene Model: November 30th, 2016
9 months agorf4 restorer of fertility4: dominant Rf4 restores fertility to cms-C; complementary with Rf5 and Rf6
8.01 - 8.01
   Liu, YM et al. 2016. PeerJ 4:e2719     Reference: November 23rd, 2016
Variation: September 1st, 2003
9 months agoemp4 empty pericarp4: mitochondrion pentatricopeptide repeat (PPR) protein involved in specific expression of mitochondrial transcripts; impaired differentiation of basal endosperm transfer cells
1.10
GRMZM2G092198
Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6   LOC_Os03g51840 (MSU/TIGR)
LOC_Os03g51840 (Gramene)
Reference: November 21st, 2016
Gene Product: September 15th, 2012
Variation: November 21st, 2016
Gene Model: November 29th, 2011
9 months agoemp9 empty pericarp9:
 
   Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6     Reference: November 21st, 2016
Variation: November 21st, 2016
9 months agoemp8 empty pericarp8:
 
   Sangiorgio, S et al. 2016. Plant Reproduction pp.doi: 10.1007/s00497-016-0294-6     Reference: November 21st, 2016
Variation: November 21st, 2016
9 months agoumc1605  : NCBI: ankyrin repeat domain-containing protein 2
1.12
GRMZM5G821637
    Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agoumc1611  :
1.05
GRMZM2G132077
    Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agorcc1 regulator of chromosome condensation1:
 
GRMZM2G302245
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agoabk1 aurora b kinase1:
 
GRMZM2G132116
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agocdc202 cell division cycle202:
 
GRMZM2G130425
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agorcc2 regulator of chromosome condensation2:
 
GRMZM2G003565
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agorcc3 regulator of chromosome condensation3:
 
GRMZM2G135770
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: November 18th, 2016
Gene Model: November 18th, 2016
9 months agocdc201 cell division cycle201:
4.06
GRMZM2G063192
Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: March 31st, 2005
Gene Model: November 18th, 2016
9 months agoumc1590  :
1.06
GRMZM2G176962
    Variation: November 17th, 2016
Gene Model: November 17th, 2016
9 months agoumc1601  : NCBI: protein trichome birefringence-like 28 NCBI: putative DUF231 domain containing family protein
1.05
GRMZM2G038855
    Variation: November 17th, 2016
Gene Model: November 17th, 2016
9 months agoumc1538a  :
1.11
GRMZM5G831951
    Variation: September 1st, 2003
Gene Model: November 16th, 2016
9 months agoumc1553  : NCBI type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like
1.11
GRMZM2G371210
    Variation: September 1st, 2003
Gene Model: November 16th, 2016
9 months agoumc1558  : NCBI: similar to Arabidopsis major facilitator protein
1.05
GRMZM2G047187
    Variation: November 16th, 2016
Gene Model: November 16th, 2016
9 months agoalf18 Alfin-like-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.03
GRMZM2G008259
Zhou, W et al. 2016. Genes Genom pp.DOI: 10.1007/s13258-016-0491-6     Reference: November 16th, 2016
Variation: September 25th, 2007
Gene Model: November 16th, 2016
9 months agoaps1 ATP sulfurylase1: mRNA differentially diminished in early- vs. late-senescing lines; similarity to ATP sulfurylase mRNA of Arabidopsis
1.10
GRMZM2G149952
Smart, CM; Hosken, SE; Thomas, H; Greaves, JA; Blair, BG; Schuch, W. 1995. Physiol Plant 93:673-682     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: November 15th, 2016
Gene Model: July 27th, 2016
9 months agonactf43 NAC-transcription factor43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI: NAC domain-containing protein 67-like
1.05
GRMZM2G082709
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: November 15th, 2016
9 months agoiaa4 Aux/IAA-transcription factor4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.10
GRMZM2G159285
Ludwig, YC et al. 2014. PLoS One 9:e107346     Reference: September 10th, 2014
Variation: November 15th, 2016
Gene Model: November 15th, 2016
9 months agoumc1500  : NCBI: DNA-binding protein HEXBP-like
1.11
GRMZM2G069218
    Variation: September 1st, 2003
Gene Model: November 14th, 2016
9 months agosbt1 subtilisin1: expressed exclusively in the in the aleurone layer of the maize kernel within a short developmental time frame
 
GRMZM2G437435
Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
9 months agosbt2 subtilisin2: expressed in the in the basal kernel in very early stages of development; also weakly expressed in unpollinated female flowers.
 
GRMZM2G039538
Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
9 months agosbt3 subtilisin3: paralog of sbt2
 
GRMZM2G363552
Lopez, M et al. 2016. Planta pp.doi: 10.1007/s00425-016-2615-2     Reference: November 11th, 2016
Gene Product: November 11th, 2016
Variation: November 11th, 2016
Gene Model: November 11th, 2016
9 months agoumc1479  :
1.03
GRMZM2G042032
    Variation: November 10th, 2016
Gene Model: November 10th, 2016
9 months agoumc1484  :
1.01
GRMZM2G107532
    Variation: November 10th, 2016
Gene Model: November 10th, 2016
9 months agoumc1486  :
1.07
GRMZM2G389567
    Variation: September 1st, 2003
Gene Model: November 10th, 2016
9 months agoumc1469  :
1.05
GRMZM2G466982
    Variation: September 1st, 2003
Gene Model: November 9th, 2016
9 months agoumc1472  : NCBI: similar to Arabidopsis putative nucleolar protein 5-2
1.04
GRMZM2G124576
    Variation: November 9th, 2016
Gene Model: November 9th, 2016
9 months agoumc1452  :
1.04 - 1.04
GRMZM2G107463
    Variation: November 8th, 2016
Gene Model: November 8th, 2016
9 months agoumc1461  :
1.05
AC202185.4_FG004
    Variation: September 1st, 2003
Gene Model: November 8th, 2016
9 months agoumc1467  :
1.02
GRMZM2G134367
    Variation: November 8th, 2016
Gene Model: November 8th, 2016
9 months agoubl1 U6 biogenesis like1: plays an important role in kernel and seedling development by influencing pre-mRNA splicing
 
GRMZM2G156575
Li, JK et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.016     Reference: November 7th, 2016
Gene Product: November 8th, 2016
Variation: November 7th, 2016
Gene Model: November 7th, 2016
9 months agomyb83 MYB-transcription factor 83: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.07
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: November 4th, 2016
9 months agoumc1421  : NCBI: pyruvate kinase isozyme A, chloroplastic-like
1.11
GRMZM2G078200
    Variation: September 1st, 2003
Gene Model: November 4th, 2016
9 months agoumc1431  : NCBI: similar to Arabidopsis plantacyanin
1.09
GRMZM2G004012
    Variation: November 4th, 2016
Gene Model: November 4th, 2016
9 months agoumc1446  : NCBI: fatty acid elongase
1.08
GRMZM2G162508
    Variation: November 4th, 2016
Gene Model: November 4th, 2016
9 months agoumc1790a  : Identified as "hornerin" at NCBI
1.04
GRMZM2G125304
    Variation: October 5th, 2016
Gene Model: November 4th, 2016
9 months agozmm6 Zea mays MADS6: single copy; identified by cDNA hybridization in situ; early expression in male and female inflorescences, differentially in one member of a spikelet-primordium pair
1.06
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: April 1st, 2011
Variation: August 8th, 2008
9 months agopebp5 phosphatidylethanolamine-binding protein:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: January 31st, 2011
9 months agopebp6 phosphatidylethanolamine-binding protein6:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 15th, 2010
9 months agopebp10 phosphatidylethanolamine-binding protein10:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 8th, 2010
9 months agopebp13 phosphatidylethanolamine-binding protein13:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 10th, 2010
9 months agopebp16 phosphatidylethanolamine-binding protein16:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 15th, 2010
9 months agopebp20 phosphatidylethanolamine-binding protein20:
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 13th, 2010
9 months agopebp24 phosphatidylethanolamine-binding protein24:
 
GRMZM2G440005
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 14th, 2010
Gene Model: July 28th, 2016
9 months agopebp26 phosphatidylethanolamine-binding protein26:
 
GRMZM2G400167
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Variation: December 14th, 2010
Gene Model: July 28th, 2016
9 months agotsh4 tassel sheath4: tsh4 mutant tassels have one to five long tassel branches, instead of ~13 observed in non-mutant W22. In place of tassel branches, long bract leaves were present, clustered at the base of the tassel.
7.03
GRMZM2G307588
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
Variation: October 8th, 2011
Gene Model: October 6th, 2011
9 months agosbp17 SBP-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
9 months agosbp20 SBP-transcription factor 20: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
9 months agosbp27 SBP-transcription factor 27: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
9 months agosbp29 SBP-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
9 months agosbp3 (GRASSIUS) SBP-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: December 18th, 2014
9 months agozmm29 Zea mays MADS29: single copy gene that co-segregates and shares 97% nt sequence identity with zmm18; probably an ortholog of rice GLOBOSA-like gene, OSMADS4; strongly expressed in male and female inflorescences and developing kernels.
8.03
GRMZM2G152862
Li, YX, et al. 2016. Plant J. 86:391-402     Reference: November 3rd, 2016
Gene Product: September 1st, 2003
Variation: August 27th, 2013
Gene Model: July 2nd, 2014
9 months agoumc140a  :
1.09
GRMZM2G108861
Winkler, RG and Helentjaris, T. 1993. MNL 67:110-111     Reference: September 1st, 2003
Variation: November 2nd, 2016
Gene Model: November 2nd, 2016
9 months agofl1 floury endosperm1: (was o4) endosperm opaque, soft; dosage effect with fl1-ref allele, but o4 allele is recessive
2.04
GRMZM2G094532
Wang, GF et al. 2016. J Exp Bot pp.doi: 10.1093/jxb/erw396     Reference: October 31st, 2016
Gene Product: July 8th, 2013
Variation: September 16th, 2010
Gene Model: July 8th, 2013
9 months agoo1 opaque endosperm1: endosperm starch soft, opaque
4.08 - 4.08
GRMZM2G449909
Wang, GF et al. 2016. J Exp Bot pp.doi: 10.1093/jxb/erw396     Reference: October 31st, 2016
Gene Product: September 1st, 2003
Variation: June 6th, 2016
Gene Model: August 28th, 2012
9 months agosk1 silkless ears1: pistils abort, no silks
2.03 - 2.04
GRMZM2G021786
Hayward, AP et al. 2016. Sci Adv 2:e1600991   AT3G22250 (TAIR)
LOC_Os04g44354 (MSU/TIGR)
Reference: October 31st, 2016
Gene Product: October 31st, 2016
Variation: October 31st, 2016
Gene Model: October 31st, 2016
9 months agoumc1403  : NCBI:putative glycosyl hydrolase family 10
1.03
GRMZM2G108032
    Variation: October 29th, 2016
Gene Model: October 30th, 2016
9 months agosbp16 SBP-transcription factor16: NCBI: squamosa promoter-binding-like protein 15 Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G169270
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 18th, 2014
Variation: September 1st, 2003
Gene Model: October 29th, 2016
9 months agoumc1396  :
1.06
GRMZM2G005652
    Variation: September 1st, 2003
Gene Model: October 28th, 2016
9 months agoumc1395  : NCBI: cyclin-D5-2-like
1.05
GRMZM2G329655
    Variation: September 1st, 2003
Gene Model: October 27th, 2016
9 months agoumc1397  : similar to Arabidopsis mannose-1-phosphate guanylyltransferase
1.03
GRMZM2G160506
    Variation: October 27th, 2016
Gene Model: October 27th, 2016
9 months agorth2 roothair defective2: root hairs elongate 1/5-1/4 of normal; plants are vigorous and show little nutritional deficiency
5.04 - 5.09
   Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Variation: September 1st, 2003
9 months agorth3 roothair defective3: like rth1, but "stocking cap" roothair initials under electron microscope
1.03
   Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Variation: June 30th, 2012
9 months agolhcb9 light harvesting chlorophyll binding protein9: cDNA sequence is a classII lhcb, unlike previously characterized lhcb genes which are classI (Viret et al 1993)
1.08
GRMZM2G414192
Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: January 8th, 2005
Variation: October 27th, 2016
Gene Model: October 27th, 2016
9 months agotps2 terpene synthase2:
 
GRMZM2G046615
Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: May 28th, 2012
Variation: May 28th, 2012
Gene Model: May 28th, 2012
9 months agotps3 terpene synthase3:
 
GRMZM2G064406
Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: May 28th, 2012
Variation: May 28th, 2012
Gene Model: May 28th, 2012
9 months agocyp19 cytochrome P-450 19:
 
GRMZM2G102079
Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: September 26th, 2016
Gene Model: September 26th, 2016
9 months agocyp20 cytochrome P-450 20:
 
GRMZM2G139467
Richter, A, et al. 2016. Plant Cell. 0:doi: 10.1105/tpc.15.00919     Reference: October 27th, 2016
Gene Product: September 26th, 2016
Gene Model: September 26th, 2016
9 months agorth6 roothairless6: mutant roothairs do not elongate; encodes a D-type cellulose synthase
 
GRMZM2G436299
Li, L et al. 2016. Sci. Rep. 6:34395     Reference: October 27th, 2016
Gene Product: October 7th, 2016
Variation: October 7th, 2016
Gene Model: October 7th, 2016
9 months agoumc1386b  : NCBI: serine/threonine-protein kinase Nek2-like
1.05
GRMZM2G052650
    Variation: October 27th, 2016
Gene Model: October 27th, 2016
9 months agoet*-N1322C etchedN1322C:
3.05 - 3.09
   Neuffer, MG and England, DJ. 1995. MNL 69:43-46     Reference: September 1st, 2003
Variation: October 26th, 2016
9 months agosudh1 succinate dehydrogenase1:
7.00
GRMZM2G064799
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh2 succinate dehydrogenase2: chimeric protein, succinate dehydrogenase iron-sulfur protein and ribosomal protein S14, mitochondrial
4.05
GRMZM2G302259
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: July 28th, 2016
9 months agoumc1374  : NCBI: similar to Arabidopsis 26S proteasome regulatory subunit N3
1.07 - 1.07
GRMZM2G119761
    Variation: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh3 succinate dehydrogenase3:
 
GRMZM2G056912
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh4 succinate dehydrogenase4:
 
GRMZM2G079888
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh5 succinate dehydrogenase5:
 
GRMZM2G109271
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh6 succinate dehydrogenase6:
 
GRMZM2G398876
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh7 succinate dehydrogenase7:
 
GRMZM2G134134
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh8 succinate dehydrogenase8:
 
GRMZM2G023760
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh9 succinate dehydrogenase9:
 
GRMZM2G160685
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh10 succinate dehydrogenase10:
 
GRMZM2G076524
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh11 succinate dehydrogenase11:
 
GRMZM2G306945
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Gene Model: October 25th, 2016
9 months agosudh12 succinate dehydrogenase12:
 
GRMZM2G146965
Eprintsev, AT et al. 2016. J Plant Physiol 205:33-40     Reference: October 25th, 2016
Gene Product: October 25th, 2016
Variation: October 25th, 2016
Gene Model: October 25th, 2016
10 months agormr6 required to maintain repression6: Recessive rmr6 plants show reversions of paramutant pl1 and r1recessive changes B' phenotype to dark; like mop1
1.06
GRMZM2G007681
Li, QL; Liu, B. 2016. Planta pp.doi: 10.1007/s00425-016-2607-2     Reference: October 24th, 2016
Gene Product: March 27th, 2013
Variation: March 28th, 2013
Gene Model: March 27th, 2013
10 months agoumc1323  : NCBI: F-box/LRR-repeat protein 17-like
1.05
GRMZM2G100121
    Variation: October 18th, 2016
Gene Model: October 20th, 2016
10 months agoumc1331  : similar to glycine-rich RNA-binding protein 8 of Chlamydomonas
1.11
GRMZM5G874478
    Variation: October 19th, 2016
Gene Model: October 20th, 2016
10 months agoumc1335  : similar to Arabidopsis ABC transporter G family member 35
1.06 - 1.07
GRMZM2G477872
    Variation: October 19th, 2016
Gene Model: October 20th, 2016
10 months agoumc1356  : NCBI: NEP1-interacting protein-like 1
1.07
GRMZM2G112617
    Variation: October 20th, 2016
Gene Model: October 20th, 2016
10 months agomyb38 myb transcription factor38: cDNA isolated by homology to C1, sequence distinct from C1
 
GRMZM2G084583
Agarwal, T et al. 2016. Sci. Rep. 6:28502     Reference: June 23rd, 2016
Gene Product: September 1st, 2003
Variation: October 20th, 2016
Gene Model: February 23rd, 2015
10 months agoumc1306  : simiilar to Arabidopsis 30S ribosomal protein S13
1.09
GRMZM2G153476
    Variation: October 18th, 2016
Gene Model: October 18th, 2016
10 months agoglk50 G2-like-transcription factor50:
1.05
GRMZM2G034563
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh2 protein phosphatase homolog2: endosperm cDNA 5C04B06 (uaz244), similar to human cell transforming protein
7.04
GRMZM2G140288
Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: October 18th, 2016
Variation: December 14th, 2012
Gene Model: May 9th, 2013
10 months agoprh3 protein phosphatase homolog3:
 
GRMZM2G059453
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh4 protein phosphatase homolog4:
 
GRMZM2G166297
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh5 protein phosphatase homolog5:
 
GRMZM2G010855
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh6 protein phosphatase homolog6:
 
GRMZM2G308615
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh7 protein phosphatase homolog7:
 
GRMZM2G082487
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh8 protein phosphatase homolog8:
 
GRMZM2G122228
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh9 protein phosphatase homolog9:
 
GRMZM5G818101
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh10 protein phosphatase homolog10:
 
GRMZM2G019819
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh11 protein phosphatase homolog11:
 
GRMZM2G159811
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh13 protein phosphatase homolog13:
 
GRMZM2G134628
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh14 protein phosphatase homolog14:
 
GRMZM2G102255
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh15 protein phosphatase homolog15:
 
GRMZM2G383807
Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Gene Model: October 18th, 2016
10 months agoprh12 protein phosphatase homolog12:
6.07
   Xiang, YL et al. 2016. Molecular Plant pp.doi: 10.1016/j.molp.2016.10.003     Reference: October 18th, 2016
Gene Product: September 1st, 2003
Variation: October 18th, 2016
10 months agolpa1 low phytic acid1: decreased phytic acid in grain with corresponding increases in inorganic phosphate
1.02
GRMZM2G155242
Pilu, R et al. 2009. Heredity 102:236-245     Reference: October 17th, 2016
Gene Product: September 1st, 2003
Variation: October 17th, 2016
Gene Model: April 23rd, 2013
Recommended by Ed Coe:
January 8th, 2008
10 months agob1 colored plant1: dominant B1 plants have anthocyanin in major plant tissues; some alleles affect aleurone and embryo color; regulates flavonoid enzymes; SSR umc1776
2.03
GRMZM2G172795
Hollick, JB. 2016. Nat Rev Genet pp.doi: 10.1038/nrg.2016.115     Reference: October 17th, 2016
Gene Product: October 13th, 2010
Variation: February 14th, 2013
Gene Model: September 22nd, 2011
10 months agop1 pericarp color1: dominant P1 regulates red pigment (phlobaphenes) in cob and pericarp (ex. P1-wr red cob; P1-rr red pericarp and cob) and in tassel glumes and husks; tissue-specific allele variations; SSR phi095
1.03
   Hollick, JB. 2016. Nat Rev Genet pp.doi: 10.1038/nrg.2016.115     Reference: October 17th, 2016
Gene Product: October 13th, 2010
Variation: May 3rd, 2016
10 months agopl1 purple plant1: Pl1 plant tissues have light-independent pigment, pl1 blue light-dependent; Pl1-Bh1, colored patches in c1 aleurone and in plant; transcriptional activator for flavonoid genes; SSR phi031, nc009, nc010. umc1014
6.04
   Hollick, JB. 2016. Nat Rev Genet pp.doi: 10.1038/nrg.2016.115     Reference: October 17th, 2016
Gene Product: June 16th, 2015
Variation: March 28th, 2013
10 months agor1 colored1: regulates anthocyanin pathway; dominant R1 (S element) confers function in aleurone; dominants represented by R1-r or r1-r (P element) confer function in anthers, leaf tip, brace roots, etc.
10.06
   Hollick, JB. 2016. Nat Rev Genet pp.doi: 10.1038/nrg.2016.115     Reference: October 17th, 2016
Gene Product: October 13th, 2010
Variation: October 8th, 2015
10 months agomrpa4 multidrug resistance-associated protein 4:
1.01
GRMZM5G820122
Pilu, R et al. 2003. Theor Appl Genet 107:980-987     Reference: May 11th, 2011
Variation: May 14th, 2011
Gene Model: October 17th, 2016
10 months agoa1 anthocyaninless1: colorless aleurone, green or brown plant; brown pericarp with P1-rr
3.09
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: April 11th, 2013
Variation: August 25th, 2010
10 months agoa2 anthocyaninless2: like a1, but red pericarp with P1-rr
5.03
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: June 7th, 2012
Variation: September 1st, 2003
10 months agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: June 16th, 2015
Variation: March 27th, 2013
10 months agodu1 dull endosperm1: glassy, tarnished endosperm; encodes a starch synthase III, that with an isoamylase-type debranching enzyme represses accumulation of phytoglycogen
10.03
GRMZM2G141399
Huang, HH et al. 2016. Sci. Rep. Article number: 27590     Reference: June 11th, 2016
Gene Product: October 14th, 2016
Variation: June 29th, 2015
Gene Model: February 28th, 2012
10 months agopr1 red aleurone1: changes purple aleurone to red; encodes flavonoid 3'-hydroxylase
5.05
GRMZM2G025832
Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: June 3rd, 2011
Variation: June 10th, 2011
Gene Model: September 22nd, 2011
10 months agosu2 sugary2: endosperm glassy, translucent, sometimes wrinkled
6.04 - 6.05
   Larson, ME et al. 2016. J Biol Chem pp.doi: 10.1074/jbc.M116.754705     Reference: October 14th, 2016
Gene Product: October 14th, 2016
Variation: October 7th, 2010
10 months agowhp1 white pollen1: duplicate factor with c2 for pollen color and for anthocyanins
2.08
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: September 1st, 2003
Variation: August 24th, 2013
10 months agoa4 anthocyaninless4: homolog/duplicate of a1, with differences at 59 positions, including deletions; mRNA expressed in tissues analyzed-cob, husks, kernel; function of gene product not known (Bernhardt et al. 1998)
8.06
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Variation: August 30th, 2013
10 months agochi3 chalcone flavanone isomerase3: Similar to chi1; expressed in various tissues, but not root, embryo, or internode (Sekhon et al 2011)
5.00
GRMZM2G119186
Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Gene Product: May 8th, 2012
Variation: May 13th, 2012
Gene Model: May 9th, 2012
10 months agopac1 pale aleurone color1: recessive, non-lethal, regulates reduced pigment in kernels
5.06
   Hu, CY et al. 2016. Sci. Rep. 6:35479     Reference: October 14th, 2016
Variation: February 23rd, 2013
10 months agoss5 starch synthase5:
 
GRMZM2G130043
Liu, H et al. 2015. Frontiers Plant Sci pp.doi: 10.3389/fpls.2015.01013     Reference: December 5th, 2015
Gene Product: October 14th, 2016
Gene Model: December 5th, 2015
10 months agoss4 starch synthase4:
 
GRMZM2G044744
Liu, H et al. 2015. Frontiers Plant Sci pp.doi: 10.3389/fpls.2015.01013     Reference: December 5th, 2015
Gene Product: October 14th, 2016
Gene Model: December 5th, 2015
10 months agoss1 starch synthase I: single copy endosperm specific cDNA; encoded-protein cross-reacts with antibody to granule associated starch synthase I
9.02
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 14th, 2016
Variation: October 7th, 2010
10 months agoumc1292  : similar to Arabidopsis serine/threonine-protein kinase
1.01
GRMZM2G176604
    Variation: October 12th, 2016
Gene Model: October 12th, 2016
10 months agozp1 zein alpha protein1: genomic sequence pMS2, SSR phi096
4.04
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Variation: May 19th, 2015
10 months agoo2 opaque endosperm2: like o1; high lysine content; regulates b-32 protein (see rip1); reduced lysine degradation (lysine-ketoglutaric reductase); SSRs phi057, 112
7.01
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Variation: June 6th, 2016
10 months agopbf1 prolamin-box binding factor1: endosperm cDNA, SSR umc1065
2.06
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Variation: April 20th, 2005
10 months agoohp1 opaque2 heterodimerizing protein1: o2 heterodimerizing protein; one of two loci
1.11
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Variation: February 2nd, 2015
10 months agoohp2 opaque2 heterodimerizing protein2: cDNA sequence, SSRs nc007, phi024
5.01
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Variation: April 25th, 2015
10 months agozp27 27-kDa zein protein: proline rich; least abundant of zeins in endosperm, not clear if all in zp27 cluster
7.02
   Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 17th, 2010
Variation: September 16th, 2010
10 months agoaz19D2 alpha zein 19kDa D2: member of a two-gene family, z1D, closely linked
1.05
AF546187.1_FG007
Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Gene Model: November 21st, 2014
10 months agozp2 zein protein2: encodes a 19 kD alpha zein
 
AF546188.1_FG005
Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Gene Model: August 1st, 2016
10 months agozp3 zein protein3: encodes a 22 kD alpha zein
 
GRMZM2G160739
Yang, J et al. 2016. Genetics 204:581-591     Reference: October 11th, 2016
Gene Product: September 1st, 2003
Gene Model: August 1st, 2016
10 months agosacd11 stearoyl-acyl-carrier-protein desaturase11:
10.04
AC215690.3_FG002
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd3 stearoyl-acyl-carrier-protein desaturase3:
1.05
   Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
10 months agosacd4 stearoyl-acyl-carrier-protein desaturase4:
 
GRMZM2G003368
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd5 stearoyl-acyl-carrier-protein desaturase5:
 
GRMZM2G026793
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd6 stearoyl-acyl-carrier-protein desaturase6:
 
GRMZM2G027673
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd7 stearoyl-acyl-carrier-protein desaturase7:
 
GRMZM2G073540
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd8 stearoyl-acyl-carrier-protein desaturase8:
 
GRMZM5G883417
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd10 stearoyl-acyl-carrier-protein desaturase10:
 
GRMZM2G119305
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd9 stearoyl-acyl-carrier-protein desaturase9:
8.06
GRMZM2G316362
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Gene Model: October 10th, 2016
10 months agosacd2 stearoyl-acyl-carrier-protein desaturase2: encodes Stearoyl-acyl carrier protein desaturase
8.06
GRMZM2G180399
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Variation: June 15th, 2016
Gene Model: June 15th, 2016
10 months agosacd1 stearoyl-acyl-carrier-protein desaturase1: encodes Stearoyl-acyl carrier protein desaturase
3.05
GRMZM5G852502
Han, YJ et al. 2016. Theor Appl Genet pp.doi: 10.1007/s00122-016-2800-5     Reference: October 10th, 2016
Gene Product: October 10th, 2016
Variation: June 15th, 2016
Gene Model: June 15th, 2016
10 months agohb2 hemoglobin2: suppression of expression is associated with programmed cell death (Huang et al 2014)
6.06
GRMZM2G168898
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: September 1st, 2003
Gene Model: May 15th, 2014
10 months agohb1 hemoglobin1: suppression of expression associated with programmed cell death (Huang et al 2014)cDNA sequence; SSR umc1733;cloned hb gene codes for a predicted protein of 164 amino acids
9.06
GRMZM2G067402
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: September 1st, 2003
Variation: September 24th, 2010
Gene Model: May 15th, 2014
10 months agoacs7 1-aminocyclopropane-1-carboxylate synthase7:
10.05
GRMZM5G894619
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Variation: August 6th, 2008
Gene Model: January 21st, 2016
10 months agoacco20 1-aminocyclopropane-1-carboxylate oxidase20:
4.07
GRMZM2G126732
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Variation: March 25th, 2015
Gene Model: March 25th, 2015
10 months agoacco35 1-aminocyclopropane-1-carboxylate oxidase35:
5.07
GRMZM2G052422
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Variation: May 19th, 2015
Gene Model: May 19th, 2015
10 months agoacco15 1-aminocyclopropane-1-carboxylate oxidase15:
 
GRMZM2G166639
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Gene Model: May 16th, 2016
10 months agoacco31 1-aminocyclopropane-1-carboxylate oxidase15:
 
GRMZM2G072529
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Gene Model: May 16th, 2016
10 months agoacs6 1-aminocyclopropane-1-carboxylate synthase6:
1.10
GRMZM2G054361
Mira, MM et al. 2016. Plant Physiol pp.doi: 10.1104/pp.16.01150     Reference: October 9th, 2016
Gene Product: May 16th, 2016
Variation: August 4th, 2008
Gene Model: January 21st, 2016
10 months agoumc1290  :
1.10
GRMZM2G026780
    Variation: September 1st, 2003
Gene Model: October 7th, 2016
10 months agodof36 C2C2-Dof-transcription factor 36: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Qi, X et al. 2016. Plant Mol Biol pp.doi: 10.1007/s11103-016-0543-y     Reference: October 7th, 2016
Variation: October 7th, 2016
10 months agocesa1 cellulose synthase1:
8.03
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: June 29th, 2005
10 months agocesa2 cellulose synthase2: cDNA
6.05
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: October 9th, 2012
10 months agocesa3 cellulose synthase3: cDNA
3.03
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: February 27th, 2015
10 months agocesa4 cellulose synthase4: cDNA
7.02
GRMZM2G424832
Appenzeller, L, et al. 2004. 11:287-299     Reference: January 24th, 2007
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
Gene Model: July 22nd, 2015
10 months agocesa5 cellulose synthase5:
1.11
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: September 1st, 2003
10 months agocesa7 cellulose synthase7:
7.02
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
10 months agocesa6 cellulose synthase6:
1.11
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: November 14th, 2012
10 months agocesa8 cellulose synthase8: cDNA
7.02
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 7th, 2016
Variation: January 3rd, 2014
10 months agogeb7 glucan endo-1,3-beta-glucosidase7 :
1.09
GRMZM2G046101
    Gene Product: September 1st, 2003
Variation: October 7th, 2016
Gene Model: October 7th, 2016
10 months agocesa10 cellulose synthase10: gene exhibits coexpression with the genes cesa11 and cesa12.
1.08
GRMZM2G445905
Appenzeller, L, et al. 2004. 11:287-299     Reference: January 24th, 2007
Gene Product: October 7th, 2016
Gene Model: July 22nd, 2015
10 months agocesa11 cellulose synthase 11: coordinately expressed with loci cesa10 and cesa12
3.07
GRMZM2G055795
Appenzeller, L, et al. 2004. 11:287-299     Reference: January 24th, 2007
Gene Product: October 7th, 2016
Gene Model: July 22nd, 2015
10 months agocesa12 cellulose synthase 12: coordinately expressed with cesa10 and cesa11
7.02
GRMZM2G142898
Appenzeller, L, et al. 2004. 11:287-299     Reference: January 24th, 2007
Gene Product: October 7th, 2016
Gene Model: July 22nd, 2015
10 months agoumc1278  : putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C per NCBI
1.07
GRMZM2G092595
    Variation: September 1st, 2003
Gene Model: October 6th, 2016
10 months agoasg3  : NCBI identifies as "putative protein kinase superfamily protein"
1.04
GRMZM2G453438
Grant, D et al. 1993. MNL 67:55-61     Reference: September 1st, 2003
Variation: October 5th, 2016
Gene Model: October 5th, 2016
10 months agoumc1254  :
1.04
GRMZM2G045135
    Variation: October 4th, 2016
Gene Model: October 4th, 2016
10 months agomop1 mediator of paramutation1: recessive changes B' phenotype to dark, similar to B1-I
2.04
GRMZM2G042443
Huang, J et al. 2016. International Review of Cell and Molecular Biology. doi: 10.1016/bs.ircmb.2016.08.002     Reference: October 3rd, 2016
Gene Product: August 8th, 2006
Variation: August 8th, 2006
Gene Model: April 24th, 2013
Recommended by Ed Coe:
January 8th, 2008
10 months agolpa2 low phytic acid2: low phytic acid
1.05
GRMZM2G456626
Kumar, SS et al. 2015. Annals of Plant and Soil Research 17:99-102     Reference: October 3rd, 2016
Gene Product: April 22nd, 2013
Variation: April 22nd, 2013
Gene Model: April 23rd, 2013
Recommended by Ed Coe:
January 8th, 2008
10 months agonrpd2/e2 nuclear RNA polymerase D2/E2: This gene was found by both the Chandler Lab (as mop2) and the Hollick lab (as rmr7).
2.02
GRMZM2G054225
Huang, J et al. 2016. International Review of Cell and Molecular Biology. doi: 10.1016/bs.ircmb.2016.08.002     Reference: October 3rd, 2016
Gene Product: November 9th, 2012
Variation: November 3rd, 2012
Gene Model: November 9th, 2012
10 months agoufo1 unstable factor for orange1: dominant Ufo1 plants have orange color in anthers, silks, and most other plant parts in presence of P1-wr or P1-rr; growth retarded
10.03
   Huang, J et al. 2016. International Review of Cell and Molecular Biology. doi: 10.1016/bs.ircmb.2016.08.002     Reference: October 3rd, 2016
Variation: October 5th, 2012
10 months agormr1 required to maintain repression1:
6.07
   Huang, J et al. 2016. International Review of Cell and Molecular Biology. doi: 10.1016/bs.ircmb.2016.08.002     Reference: October 3rd, 2016
Gene Product: April 30th, 2008
Variation: May 10th, 2013
10 months agotgr1 transgene reactivated1:
 
   Huang, J et al. 2016. International Review of Cell and Molecular Biology. doi: 10.1016/bs.ircmb.2016.08.002     Reference: October 3rd, 2016
Variation: December 23rd, 2014
10 months agoumc1243  : similar to Arabidopsis peroxidase 3
1.05 - 1.05
GRMZM2G085198
    Variation: September 30th, 2016
Gene Model: October 1st, 2016
10 months agoumc1245  :
1.07
GRMZM2G113781
    Variation: September 1st, 2003
Gene Model: September 30th, 2016
10 months agoga2 gametophyte factor2: Ga2 pollen grains are competitively superior to ga2 on Ga2 silks.
5.04
   Lu, Y et al. 2014. Plant Reproduction 27:19-20     Reference: December 18th, 2014
Variation: September 29th, 2016
10 months agomis12a minichromosome instability12a: encodes a core kinetochore protein required in meiosis I
10.07
GRMZM2G173660
Koo, DH; Zhao, H; Jiang, JM. 2016. Chromosome Res. 0:10.1007/s10577-016-9537-5   AT5G35520 (TAIR)
LOC_Os02g40680 (MSU/TIGR)
LOC_Os02g40680 (Gramene)
Reference: September 29th, 2016
Gene Product: December 24th, 2015
Variation: October 16th, 2010
Gene Model: December 24th, 2015
10 months agoo10 opaque endosperm10: like o1
 
GRMZM2G346263
Yao, DS, et al. 2016. PLoS Genetics. 12:e1006270     Reference: September 29th, 2016
Gene Product: August 20th, 2016
Variation: August 20th, 2016
Gene Model: August 20th, 2016
10 months agoiaa5 Aux/IAA-transcription factor5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.11
GRMZM5G809195
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 28th, 2016
Gene Model: September 29th, 2016
10 months agoumc1200  :
1.00
GRMZM2G127635
    Variation: September 29th, 2016
Gene Model: September 29th, 2016
10 months agoumc1222  :
1.01 - 1.02
GRMZM2G056870
    Variation: September 29th, 2016
Gene Model: September 29th, 2016
10 months agoumc1147  : Similar to Monocopper oxidase-like protein SKU5 of Arabidopsis C-terminal peptide-binding protein 1
1.07
GRMZM2G438386
Shimomura, S. 2006. Plant Mol Biol 60:663-677     Reference: September 28th, 2016
Variation: September 28th, 2016
Gene Model: September 28th, 2016
10 months agoumc115  :
1.02
GRMZM2G162814
Chao, S; Baysdorfer, C; Heredia-Diaz, O; Musket, T; Xu, G; Coe, EH. 1994. Theor Appl Genet 88:717-721     Reference: September 1st, 2003
Variation: September 28th, 2016
Gene Model: March 4th, 2016
10 months agocyp10 cytochrome P450 10: Unpublished DNA sequence submitted to GenBank
3.09
GRMZM2G370745
    Gene Product: September 26th, 2016
Variation: January 20th, 2014
Gene Model: April 30th, 2013
Recommended by Ed Coe:
January 8th, 2008
10 months agocyp7 cytochrome P450 7: single copy cDNA (unpublished)
3.05
   Jameson, N et al. 2008. Plant Mol Biol 67:295-304     Reference: March 5th, 2010
Gene Product: September 26th, 2016
Variation: February 15th, 2014
10 months agocyp1710  : single copy; cDNA; maps near cyp2
4.00
       Gene Product: September 26th, 2016
10 months agocyp2707  : cDNA, single copy; maps near cyp2
4.00
       Gene Product: September 26th, 2016
10 months agocyp16 cytochrome P450 16:
 
   Jameson, N et al. 2008. Plant Mol Biol 67:295-304     Reference: March 5th, 2010
Gene Product: September 26th, 2016
Variation: February 15th, 2014
10 months agocyp12 cytochrome P450 12:
2.06
GRMZM2G091588
Persans, M et al. 2001. Plant Physiol 125:1126-1138     Reference: January 22nd, 2010
Gene Product: September 26th, 2016
Variation: January 22nd, 2010
Gene Model: April 30th, 2013
10 months agocyp11 cytochrome P450 11: Transcript induced by naphthalic anhydride or triasulfuron herbicide
3.09
GRMZM2G129860
Christensen, SA et al. 2015. Proc Natl Acad Sci, USA 112:11407-11412     Reference: October 30th, 2015
Gene Product: September 26th, 2016
Variation: January 22nd, 2010
Gene Model: April 30th, 2013
11 months agoys3 yellow stripe3: yellow tissue between leaf veins, corrected by ferrous iron supplementation
3.04
   Yin, ZH et al. 2016. Yichuan 38:560-568     Reference: September 23rd, 2016
Variation: May 20th, 2006
11 months agoumc1122  :
1.06
GRMZM2G016210
    Variation: September 23rd, 2016
Gene Model: September 23rd, 2016
11 months agomfsd2 major facilitator superfamily defense2: Protein related to integral membrane permeases and bacterial antiporters
 
GRMZM5G877788
Nozoye, T et al. 2015. Genom Data 5: 97-99     Reference: October 21st, 2015
Gene Product: September 23rd, 2016
Variation: October 16th, 2010
Gene Model: December 30th, 2015
11 months agotom1 transporter of mugineic acid1: homolog of rice tom1; expression level significantly decreased in the ys3 mutant
 
GRMZM2G063306
Yin, ZH et al. 2016. Yichuan 38:560-568   Os11g0134900 (Gramene) Reference: September 23rd, 2016
Gene Product: September 23rd, 2016
Gene Model: June 2nd, 2015
11 months agotom3 transporter of mugineic acid3: induced in the roots under Fe-deficient conditions
 
GRMZM2G141081
Nozoye, T et al. 2015. Genom Data 5: 97-99     Reference: October 21st, 2015
Gene Product: September 23rd, 2016
Gene Model: September 23rd, 2016
11 months agophos1 phosphate transporter1:
 
GRMZM5G891944
Salazar, MN et al. 2016. PLoS One 11:e0161882   AT1G68740 (TAIR) Reference: September 22nd, 2016
Gene Product: February 27th, 2016
Gene Model: February 27th, 2016
11 months agophos2 phosphate transporter2:
 
GRMZM2G466545
Salazar, MN et al. 2016. PLoS One 11:e0161882   AT3G23430 (TAIR) Reference: September 22nd, 2016
Gene Product: February 27th, 2016
Variation: February 27th, 2016
Gene Model: February 27th, 2016
11 months agophos4 phosphate transporter4:
 
GRMZM2G064657
Salazar, MN et al. 2016. PLoS One 11:e0161882   AT1G68740 (TAIR) Reference: September 22nd, 2016
Gene Product: February 27th, 2016
Gene Model: February 27th, 2016
11 months agophos3 phosphate transporter3:
 
GRMZM5G851655
Salazar, MN et al. 2016. PLoS One 11:e0161882   LOC_Os02g56510 (MSU/TIGR) Reference: September 22nd, 2016
Gene Product: February 27th, 2016
Variation: February 27th, 2016
Gene Model: February 27th, 2016
11 months agoumc1118  :
1.11
       Variation: September 21st, 2016
11 months agoarid1 ARID-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 20th, 2016
11 months agopmk1 Phosphomevalonate kinase1:
1.03
GRMZM2G019260
Peschke, VM and Sachs, MM. 1993. Mol Gen Genet 240:206-212     Reference: September 1st, 2003
Variation: March 9th, 2016
Gene Model: September 20th, 2016
11 months agopzb01227  : candidate for clavata3 (CLV3) ortholog
1.11
   Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Variation: September 25th, 2007
11 months agoesr1 embryo surrounding region1: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G046086
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: September 1st, 2003
Variation: June 12th, 2012
Gene Model: January 5th, 2016
11 months agoesr2 embryo surrounding region2: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G315601
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: September 1st, 2003
Variation: June 12th, 2012
Gene Model: January 5th, 2016
11 months agoesr3 embryo surrounding region3: cDNA expressed 4 to 28 DAP in endosperm locally surrounding the embryo
1.02
GRMZM2G140302
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Gene Product: September 1st, 2003
Variation: May 22nd, 2014
Gene Model: January 5th, 2016
11 months agofea3 fasciated ear3: ear tip broad and branched, typically splitting and showing ring fasciation to form a hollow ear.
 
GRMZM2G166524
Je, BI et al. 2016. Nature Genetics 48:785-791   At3g25670 (TAIR)
LOC_Os01g02060 (MSU/TIGR)
Reference: September 17th, 2016
Gene Product: May 21st, 2016
Variation: May 18th, 2016
Gene Model: May 18th, 2016
11 months agofcp1 fon2-like cle protein1: mutants have a fasciated ear phenotype
 
GRMZM2G165836
Je, BI et al. 2016. Nature Genetics 48:785-791   LOC_Os04g39770 (MSU/TIGR)
Os04g0473800 (Gramene)
Reference: September 17th, 2016
Gene Product: May 21st, 2016
Variation: May 22nd, 2016
Gene Model: May 21st, 2016
11 months agocle5 clavata3/esr-related5: candidate for clavata3 (CLV3) ortholog
5.01
GRMZM5G875999
Je, BI et al. 2016. Nature Genetics 48:785-791     Reference: September 17th, 2016
Variation: March 31st, 2005
Gene Model: September 17th, 2016
11 months agouce5 ubiquitin conjugating enzyme5:
1.10
GRMZM2G301071
Winkler, RG and Helentjaris, T. 1993. MNL 67:110-111     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 16th, 2016
Gene Model: September 16th, 2016
11 months agoumc106a  : Similar to Arabidopsis CwfJ-like protein
1.10
GRMZM2G301071
Winkler, RG and Helentjaris, T. 1993. MNL 67:110-111     Reference: September 1st, 2003
Variation: September 15th, 2016
Gene Model: September 15th, 2016
11 months agoptf1 Pi starvation-induced transcription factor1: single copy, may be involved in regulating carbohydrate metabolism
9.01 - 9.02
GRMZM2G024530
Hawkins, JS et al. 2014. Plant J 79:375-384   LOC_Os02g35660 (MSU/TIGR)
LOC_Os02g35660 (Gramene)
Reference: September 25th, 2015
Gene Product: September 14th, 2016
Variation: April 23rd, 2011
Gene Model: April 19th, 2011
Recommended by Maria Katherine Mejia-Guerra:
April 18th, 2011
11 months agohopi1 hopi r1/b1 family member1: (was r1-ch:Hopi) r1/b1 gene family member, 4.5 cM from r1; dominant confers pigmentation on germination in light to aleurone and scutellum, light- or Pl1-dependent in pericarp, and pigment in plant parts. Possibly same as sn1 and/or lc1.
10.05 - 10.06
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: September 14th, 2016
Variation: September 9th, 2010
11 months agobhlh130 bHLH-transcription factor 130: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Grimault, A, et al. 2015. Plant J. 0:doi: 10.1111/tpj.13024   AT3G26744 (TAIR) Reference: September 17th, 2015
Gene Product: September 14th, 2016
11 months agobhlh96 bHLH-transcription factor 96: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Grimault, A, et al. 2015. Plant J. 0:doi: 10.1111/tpj.13024   AT3G26744 (TAIR) Reference: September 17th, 2015
Gene Product: September 14th, 2016
11 months agomyc7 myc transcription factor7: transcription factor induced by iron starvation; restores yeast fet3 fet4
1.05
GRMZM2G001930
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: September 14th, 2016
Variation: November 10th, 2005
Gene Model: July 28th, 2016
11 months agoIDP1489  :
1.04
GRMZM2G043493
Ge, F et al. 2016. Physiol Plant pp.doi: 10.1111/ppl.12470     Reference: May 20th, 2016
Gene Product: September 14th, 2016
Variation: March 31st, 2005
Gene Model: May 20th, 2016
11 months agomel1 maternal effect lethal1: defective kernels from maternally inherited mel1 allele
2.02
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agostt1 stunter1: developmentally delayed miniature kernels
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agomre1 maternal rough endosperm1: maternal-effect rough endosperm
 
   Bai, F et al. 2016. Genetics 204:221-231     Reference: September 7th, 2016
Variation: July 22nd, 2016
11 months agomre2 maternal rough endosperm2: maternal-effect rough endosperm
 
   Bai, F et al. 2016. Genetics 204:221-231     Reference: September 7th, 2016
Variation: July 22nd, 2016
11 months agomre3 maternal rough endosperm3: maternal-effect rough endosperm
 
   Bai, F et al. 2016. Genetics 204:221-231     Reference: September 7th, 2016
Variation: July 22nd, 2016
11 months agossc1 sans scion1: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agotpn1 topknot1: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agohrl2 heirless2: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agonbe1 no bet1 expression1: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agomrn3 maternally reduced endosperm3: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agomrn2 maternally reduced endosperm2: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agostt2 stunter2: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agostt3 stunter3: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agoecr1 empty creche1: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agoecr2 empty creche2: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: July 29th, 2016
11 months agomn*-866248U miniature kernel*-866248U: maternal-effect dek
 
   Chettoor, AM et al. 2016. Genetics 204:233-248     Reference: September 7th, 2016
Variation: August 5th, 2016
11 months agoifc1 incompletely fused carpels1: mutant results in an open stylar canal on the ovary and an incomplete pericarp at the top of the kernel
 
   Li, HP et al. 2016. Sci. Rep. 6:32652     Reference: September 3rd, 2016
Variation: September 4th, 2016
11 months agoduf177 domain of unknown function177: mutants block development at an early transition stage of embryogenesis
 
GRMZM2G433025
Yang, JN et al. 2016. J Exp Bot pp.doi: 10.1093/jxb/erw311   At3g19810 (TAIR) Reference: August 31st, 2016
Gene Product: August 31st, 2016
Variation: August 31st, 2016
Gene Model: August 31st, 2016
11 months agoGRMZM2G021694  : encodes a DUF177
 
GRMZM2G021694
Yang, JN et al. 2016. J Exp Bot pp.doi: 10.1093/jxb/erw311   At3g19800 (TAIR) Reference: August 31st, 2016
Gene Product: August 31st, 2016
Gene Model: August 31st, 2016

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